Iron in PDB 3sdh: High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin
Protein crystallography data
The structure of High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin, PDB code: 3sdh
was solved by
W.E.Royerjunior,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
1.40
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.250,
43.980,
83.500,
90.00,
122.03,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin
(pdb code 3sdh). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin, PDB code: 3sdh:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 3sdh
Go back to
Iron Binding Sites List in 3sdh
Iron binding site 1 out
of 2 in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe147
b:14.5
occ:1.00
|
FE
|
A:HEM147
|
0.0
|
14.5
|
1.0
|
C
|
A:CMO501
|
1.8
|
14.8
|
1.0
|
NC
|
A:HEM147
|
2.0
|
14.9
|
1.0
|
NB
|
A:HEM147
|
2.0
|
14.4
|
1.0
|
NA
|
A:HEM147
|
2.0
|
14.2
|
1.0
|
ND
|
A:HEM147
|
2.0
|
14.7
|
1.0
|
NE2
|
A:HIS101
|
2.1
|
14.5
|
1.0
|
O
|
A:CMO501
|
2.9
|
14.0
|
1.0
|
C4C
|
A:HEM147
|
3.0
|
15.6
|
1.0
|
C4B
|
A:HEM147
|
3.0
|
14.6
|
1.0
|
C1C
|
A:HEM147
|
3.0
|
14.7
|
1.0
|
CE1
|
A:HIS101
|
3.0
|
14.2
|
1.0
|
C1A
|
A:HEM147
|
3.0
|
14.8
|
1.0
|
C1B
|
A:HEM147
|
3.0
|
14.8
|
1.0
|
C4D
|
A:HEM147
|
3.0
|
15.7
|
1.0
|
C4A
|
A:HEM147
|
3.1
|
14.4
|
1.0
|
C1D
|
A:HEM147
|
3.1
|
16.0
|
1.0
|
CD2
|
A:HIS101
|
3.1
|
14.4
|
1.0
|
CHA
|
A:HEM147
|
3.4
|
15.5
|
1.0
|
CHC
|
A:HEM147
|
3.4
|
14.9
|
1.0
|
CHD
|
A:HEM147
|
3.4
|
15.4
|
1.0
|
CHB
|
A:HEM147
|
3.4
|
14.4
|
1.0
|
ND1
|
A:HIS101
|
4.2
|
14.9
|
1.0
|
CG
|
A:HIS101
|
4.2
|
14.5
|
1.0
|
C2C
|
A:HEM147
|
4.2
|
15.4
|
1.0
|
C3C
|
A:HEM147
|
4.2
|
15.7
|
1.0
|
C3B
|
A:HEM147
|
4.3
|
15.5
|
1.0
|
C2B
|
A:HEM147
|
4.3
|
14.9
|
1.0
|
C2A
|
A:HEM147
|
4.3
|
15.0
|
1.0
|
C3D
|
A:HEM147
|
4.3
|
16.2
|
1.0
|
C3A
|
A:HEM147
|
4.3
|
14.7
|
1.0
|
C2D
|
A:HEM147
|
4.3
|
16.2
|
1.0
|
CE1
|
A:HIS69
|
4.7
|
17.9
|
1.0
|
CD1
|
A:LEU73
|
4.7
|
20.9
|
1.0
|
CE1
|
A:PHE111
|
4.9
|
18.1
|
1.0
|
|
Iron binding site 2 out
of 2 in 3sdh
Go back to
Iron Binding Sites List in 3sdh
Iron binding site 2 out
of 2 in the High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution Crystallographic Analysis of A Cooperative Dimeric Hemoglobin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:14.2
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
14.2
|
1.0
|
C
|
B:CMO501
|
1.8
|
15.3
|
1.0
|
NB
|
B:HEM147
|
2.0
|
15.4
|
1.0
|
NA
|
B:HEM147
|
2.0
|
14.1
|
1.0
|
NC
|
B:HEM147
|
2.0
|
14.9
|
1.0
|
ND
|
B:HEM147
|
2.0
|
15.3
|
1.0
|
NE2
|
B:HIS101
|
2.1
|
14.7
|
1.0
|
O
|
B:CMO501
|
2.9
|
15.0
|
1.0
|
C1B
|
B:HEM147
|
3.0
|
15.5
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
15.8
|
1.0
|
C4C
|
B:HEM147
|
3.0
|
15.4
|
1.0
|
CE1
|
B:HIS101
|
3.0
|
16.0
|
1.0
|
C4D
|
B:HEM147
|
3.0
|
15.4
|
1.0
|
C4A
|
B:HEM147
|
3.0
|
14.9
|
1.0
|
C1A
|
B:HEM147
|
3.0
|
15.0
|
1.0
|
C1C
|
B:HEM147
|
3.1
|
15.6
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
15.6
|
1.0
|
CD2
|
B:HIS101
|
3.1
|
14.3
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
15.7
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
15.2
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
15.2
|
1.0
|
CHC
|
B:HEM147
|
3.5
|
15.5
|
1.0
|
ND1
|
B:HIS101
|
4.2
|
14.7
|
1.0
|
CG
|
B:HIS101
|
4.2
|
14.5
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
15.9
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
15.6
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
15.8
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
15.3
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
15.7
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
15.8
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
15.6
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
15.3
|
1.0
|
CD1
|
B:LEU73
|
4.7
|
19.4
|
1.0
|
CE1
|
B:HIS69
|
4.8
|
16.4
|
1.0
|
CE2
|
B:PHE111
|
4.9
|
15.7
|
1.0
|
|
Reference:
W.E.Royer Jr.,
W.E.Royerjunior.
N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 8289287
DOI: 10.1006/JMBI.1994.1019
Page generated: Sun Aug 4 19:54:31 2024
|