Iron in PDB 3ta8: Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM)

The structure of Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM), PDB code: 3ta8 was solved by O.Tsuruta, H.Yokoyama, S.Fujii, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.49 / 2.50
Space group	F 4 3 2
Cell size a, b, c (Å), α, β, γ (°)	188.530, 188.530, 188.530, 90.00, 90.00, 90.00
R / Rfree (%)	21.3 / 24.2

The binding sites of Iron atom in the Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM) (pdb code 3ta8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM), PDB code: 3ta8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:40.2 occ:0.50 NE2 A:HIS25 2.5 38.5 1.0 CD2 A:HIS25 3.3 38.8 1.0 CE1 A:HIS25 3.5 37.0 1.0 O A:HOH335 3.5 57.1 1.0 OH A:TYR44 3.8 40.0 1.0 NE2 A:HIS37 4.3 42.9 1.0 CE1 A:HIS37 4.5 44.2 1.0 CG A:HIS25 4.5 39.5 1.0 ND1 A:HIS25 4.6 40.9 1.0 NE1 A:TRP26 4.7 30.2 1.0

Iron binding site 2 out of 2 in the Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure Hp-Nap From Strain YS39 Iron Loaded (Cocrystallization 5MM) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:52.8 occ:0.17 O A:HOH342 3.9 43.8 1.0 OD1 A:ASP127 4.0 47.7 1.0 CG2 A:THR123 4.4 34.5 1.0 OD2 A:ASP127 4.8 47.8 1.0 CG A:ASP127 4.9 43.0 1.0

O.Tsuruta, H.Yokoyama, S.Fujii. A New Crystal Lattice Structure of Helicobacter Pylori Neutrophil-Activating Protein (Hp-Nap) Acta Crystallogr.,Sect.F V. 68 134 2012.
ISSN: ESSN 1744-3091
PubMed: 22297984
DOI: 10.1107/S1744309111052675