Iron in PDB 3tbm: Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein.

The structure of Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein., PDB code: 3tbm was solved by J.Lin, L.Zhang, K.Ye, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.47 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	73.566, 54.434, 43.517, 90.00, 113.78, 90.00
R / Rfree (%)	20.5 / 25.1

The binding sites of Iron atom in the Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein. (pdb code 3tbm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein., PDB code: 3tbm:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe67 b:16.2 occ:1.00 FE1 A:FES67 0.0 16.2 1.0 S2 A:FES67 2.2 15.0 1.0 SG A:CYS43 2.3 14.7 1.0 S1 A:FES67 2.3 10.5 1.0 SG A:CYS41 2.4 14.4 1.0 FE2 A:FES67 2.7 15.8 1.0 CB A:CYS43 3.3 12.7 1.0 CB A:CYS41 3.4 12.2 1.0 N A:CYS43 3.5 11.9 1.0 CA A:CYS41 3.7 14.9 1.0 N A:ARG42 3.8 8.2 1.0 CA A:CYS43 3.9 12.8 1.0 CB A:HIS56 4.1 16.9 1.0 N A:SER46 4.1 20.3 1.0 N A:HIS56 4.2 16.7 1.0 C A:CYS41 4.2 13.2 1.0 N A:GLY44 4.3 14.7 1.0 ND1 A:HIS56 4.4 17.2 1.0 CB A:SER46 4.4 13.7 1.0 C A:CYS43 4.5 14.7 1.0 CA A:HIS56 4.5 19.3 1.0 N A:HIS45 4.5 17.9 1.0 C A:ARG42 4.6 15.8 1.0 CG A:HIS56 4.7 20.1 1.0 CA A:SER46 4.7 17.0 1.0 SG A:CYS52 4.8 17.7 1.0 CA A:ARG42 4.9 16.2 1.0 CA A:CYS52 4.9 15.6 1.0 CB A:SER55 4.9 18.2 1.0

Iron binding site 2 out of 4 in the Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe67 b:15.8 occ:1.00 FE2 A:FES67 0.0 15.8 1.0 S2 A:FES67 2.2 15.0 1.0 ND1 A:HIS56 2.2 17.2 1.0 S1 A:FES67 2.3 10.5 1.0 SG A:CYS52 2.3 17.7 1.0 FE1 A:FES67 2.7 16.2 1.0 CE1 A:HIS56 3.1 17.2 1.0 CG A:HIS56 3.2 20.1 1.0 CB A:CYS52 3.3 14.7 1.0 CB A:HIS56 3.5 16.9 1.0 CA A:CYS52 3.8 15.6 1.0 N A:HIS56 3.9 16.7 1.0 N A:GLY54 4.0 19.3 1.0 N A:ASP53 4.1 17.8 1.0 CD A:PRO14 4.2 14.1 1.0 NE2 A:HIS56 4.2 16.0 1.0 CB A:PRO14 4.3 8.7 1.0 CD2 A:HIS56 4.3 11.5 1.0 CA A:HIS56 4.4 19.3 1.0 C A:CYS52 4.4 15.3 1.0 N A:SER55 4.4 17.7 1.0 SG A:CYS43 4.4 14.7 1.0 CG A:PRO14 4.4 12.1 1.0 CA A:GLY54 4.5 19.6 1.0 N A:PRO14 4.6 14.2 1.0 C A:GLY54 4.6 18.8 1.0 CA A:CYS41 4.7 14.9 1.0 SG A:CYS41 4.7 14.4 1.0 CA A:PRO14 4.8 13.5 1.0 CB A:CYS41 4.9 12.2 1.0

Iron binding site 3 out of 4 in the Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe67 b:16.5 occ:1.00 FE1 B:FES67 0.0 16.5 1.0 S2 B:FES67 2.2 17.8 1.0 S1 B:FES67 2.2 15.2 1.0 SG B:CYS43 2.3 15.1 1.0 SG B:CYS41 2.4 13.4 1.0 FE2 B:FES67 2.8 15.1 1.0 CB B:CYS41 3.3 15.4 1.0 CB B:CYS43 3.3 9.6 1.0 N B:CYS43 3.6 11.6 1.0 CA B:CYS41 3.7 11.2 1.0 N B:ARG42 3.9 10.2 1.0 CA B:CYS43 4.0 10.4 1.0 CB B:HIS56 4.0 11.3 1.0 N B:HIS56 4.0 12.3 1.0 N B:SER46 4.1 17.8 1.0 C B:CYS41 4.2 12.4 1.0 N B:GLY44 4.2 18.6 1.0 CB B:SER46 4.3 16.4 1.0 N B:HIS45 4.4 15.4 1.0 CA B:HIS56 4.4 17.4 1.0 ND1 B:HIS56 4.4 13.8 1.0 C B:CYS43 4.5 15.8 1.0 CA B:SER46 4.6 19.9 1.0 C B:ARG42 4.7 13.3 1.0 CG B:HIS56 4.7 12.8 1.0 SG B:CYS52 4.7 12.3 1.0 CA B:CYS52 4.8 14.4 1.0 CA B:ARG42 4.9 13.9 1.0 CB B:CYS52 4.9 16.9 1.0 C B:SER55 4.9 13.8 1.0 C B:HIS45 4.9 18.1 1.0 CB B:SER55 4.9 16.1 1.0 N B:CYS41 5.0 12.2 1.0

Iron binding site 4 out of 4 in the Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Type 4 Cdgsh Iron-Sulfur Protein. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe67 b:15.1 occ:1.00 FE2 B:FES67 0.0 15.1 1.0 S2 B:FES67 2.2 17.8 1.0 ND1 B:HIS56 2.2 13.8 1.0 S1 B:FES67 2.3 15.2 1.0 SG B:CYS52 2.3 12.3 1.0 FE1 B:FES67 2.8 16.5 1.0 CG B:HIS56 3.2 12.8 1.0 CE1 B:HIS56 3.2 16.1 1.0 CB B:CYS52 3.3 16.9 1.0 CB B:HIS56 3.4 11.3 1.0 CA B:CYS52 3.8 14.4 1.0 N B:HIS56 3.8 12.3 1.0 N B:GLY54 3.9 16.6 1.0 N B:ASP53 4.1 11.0 1.0 CD B:PRO14 4.2 16.1 1.0 NE2 B:HIS56 4.3 17.1 1.0 CD2 B:HIS56 4.3 15.8 1.0 CB B:PRO14 4.3 11.5 1.0 CA B:HIS56 4.3 17.4 1.0 C B:CYS52 4.3 12.6 1.0 N B:SER55 4.4 17.2 1.0 CA B:GLY54 4.4 16.4 1.0 CG B:PRO14 4.5 13.8 1.0 N B:PRO14 4.5 12.6 1.0 SG B:CYS43 4.5 15.1 1.0 C B:GLY54 4.5 17.9 1.0 CA B:CYS41 4.7 11.2 1.0 SG B:CYS41 4.7 13.4 1.0 CA B:PRO14 4.8 13.3 1.0 CB B:CYS41 4.8 15.4 1.0 C B:SER55 4.9 13.8 1.0

J.Lin, L.Zhang, S.Lai, K.Ye. Structure and Molecular Evolution of Cdgsh Iron-Sulfur Domains. Plos One V. 6 24790 2011.
ISSN: ESSN 1932-6203
PubMed: 21949752
DOI: 10.1371/JOURNAL.PONE.0024790