Iron in PDB 3ucp: Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
Protein crystallography data
The structure of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6, PDB code: 3ucp
was solved by
M.J.Edwards,
T.A.Clarke,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
40.91 /
1.76
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
69.640,
106.090,
151.650,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
14.4 /
17.7
|
Other elements in 3ucp:
The structure of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Iron atom in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
(pdb code 3ucp). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 11 binding sites of Iron where determined in the
Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6, PDB code: 3ucp:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 1 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe901
b:13.1
occ:1.00
|
FE
|
A:HEC901
|
0.0
|
13.1
|
1.0
|
|
NB
|
A:HEC901
|
2.0
|
12.5
|
1.0
|
|
ND
|
A:HEC901
|
2.0
|
11.5
|
1.0
|
|
NE2
|
A:HIS310
|
2.0
|
10.7
|
1.0
|
|
NE2
|
A:HIS256
|
2.0
|
11.9
|
1.0
|
|
NA
|
A:HEC901
|
2.0
|
12.1
|
1.0
|
|
NC
|
A:HEC901
|
2.1
|
11.8
|
1.0
|
|
CE1
|
A:HIS256
|
3.0
|
14.2
|
1.0
|
|
CE1
|
A:HIS310
|
3.0
|
12.9
|
1.0
|
|
CD2
|
A:HIS310
|
3.0
|
12.6
|
1.0
|
|
C1B
|
A:HEC901
|
3.0
|
12.9
|
1.0
|
|
C4C
|
A:HEC901
|
3.0
|
9.5
|
1.0
|
|
C4A
|
A:HEC901
|
3.0
|
13.8
|
1.0
|
|
C1D
|
A:HEC901
|
3.0
|
12.6
|
1.0
|
|
C4D
|
A:HEC901
|
3.0
|
13.2
|
1.0
|
|
C4B
|
A:HEC901
|
3.0
|
12.7
|
1.0
|
|
CD2
|
A:HIS256
|
3.0
|
11.1
|
1.0
|
|
C1A
|
A:HEC901
|
3.1
|
11.3
|
1.0
|
|
C1C
|
A:HEC901
|
3.1
|
8.9
|
1.0
|
|
CHD
|
A:HEC901
|
3.4
|
12.2
|
1.0
|
|
CHB
|
A:HEC901
|
3.4
|
12.4
|
1.0
|
|
CHA
|
A:HEC901
|
3.4
|
12.6
|
1.0
|
|
CHC
|
A:HEC901
|
3.5
|
9.9
|
1.0
|
|
ND1
|
A:HIS310
|
4.1
|
12.8
|
1.0
|
|
ND1
|
A:HIS256
|
4.1
|
13.4
|
1.0
|
|
CG
|
A:HIS310
|
4.1
|
12.2
|
1.0
|
|
CG
|
A:HIS256
|
4.2
|
12.7
|
1.0
|
|
C2B
|
A:HEC901
|
4.2
|
14.1
|
1.0
|
|
C3B
|
A:HEC901
|
4.2
|
11.7
|
1.0
|
|
C3A
|
A:HEC901
|
4.2
|
11.3
|
1.0
|
|
C3C
|
A:HEC901
|
4.3
|
9.4
|
1.0
|
|
C2D
|
A:HEC901
|
4.3
|
14.1
|
1.0
|
|
C2A
|
A:HEC901
|
4.3
|
11.7
|
1.0
|
|
C3D
|
A:HEC901
|
4.3
|
13.6
|
1.0
|
|
C2C
|
A:HEC901
|
4.3
|
8.8
|
1.0
|
|
Iron binding site 2 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 2 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe902
b:17.4
occ:1.00
|
FE
|
A:HEC902
|
0.0
|
17.4
|
1.0
|
|
NC
|
A:HEC902
|
2.0
|
16.4
|
1.0
|
|
NE2
|
A:HIS287
|
2.0
|
17.3
|
1.0
|
|
NA
|
A:HEC902
|
2.0
|
15.6
|
1.0
|
|
NB
|
A:HEC902
|
2.0
|
17.6
|
1.0
|
|
ND
|
A:HEC902
|
2.1
|
15.9
|
1.0
|
|
NE2
|
A:HIS273
|
2.1
|
18.3
|
1.0
|
|
CE1
|
A:HIS287
|
2.8
|
17.1
|
1.0
|
|
CE1
|
A:HIS273
|
3.0
|
23.3
|
1.0
|
|
C4C
|
A:HEC902
|
3.0
|
18.4
|
1.0
|
|
C1B
|
A:HEC902
|
3.0
|
18.0
|
1.0
|
|
C4A
|
A:HEC902
|
3.0
|
18.2
|
1.0
|
|
C1D
|
A:HEC902
|
3.0
|
18.4
|
1.0
|
|
C1C
|
A:HEC902
|
3.1
|
16.0
|
1.0
|
|
C1A
|
A:HEC902
|
3.1
|
16.3
|
1.0
|
|
C4B
|
A:HEC902
|
3.1
|
15.2
|
1.0
|
|
CD2
|
A:HIS273
|
3.1
|
19.2
|
1.0
|
|
C4D
|
A:HEC902
|
3.1
|
13.5
|
1.0
|
|
CD2
|
A:HIS287
|
3.2
|
14.8
|
1.0
|
|
CHD
|
A:HEC902
|
3.3
|
18.1
|
1.0
|
|
CHB
|
A:HEC902
|
3.3
|
15.7
|
1.0
|
|
CHC
|
A:HEC902
|
3.5
|
14.6
|
1.0
|
|
CHA
|
A:HEC902
|
3.5
|
14.7
|
1.0
|
|
ND1
|
A:HIS287
|
4.0
|
18.0
|
1.0
|
|
ND1
|
A:HIS273
|
4.1
|
26.2
|
1.0
|
|
CG
|
A:HIS287
|
4.2
|
13.9
|
1.0
|
|
CG
|
A:HIS273
|
4.2
|
19.7
|
1.0
|
|
C3C
|
A:HEC902
|
4.2
|
15.4
|
1.0
|
|
C3A
|
A:HEC902
|
4.2
|
16.4
|
1.0
|
|
C2B
|
A:HEC902
|
4.2
|
14.2
|
1.0
|
|
C2D
|
A:HEC902
|
4.3
|
18.6
|
1.0
|
|
C2A
|
A:HEC902
|
4.3
|
16.0
|
1.0
|
|
C2C
|
A:HEC902
|
4.3
|
16.0
|
1.0
|
|
C3B
|
A:HEC902
|
4.3
|
16.0
|
1.0
|
|
C3D
|
A:HEC902
|
4.3
|
16.2
|
1.0
|
|
Iron binding site 3 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 3 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe903
b:13.9
occ:1.00
|
FE
|
A:HEC903
|
0.0
|
13.9
|
1.0
|
|
NE2
|
A:HIS365
|
2.0
|
14.0
|
1.0
|
|
NE2
|
A:HIS307
|
2.0
|
13.6
|
1.0
|
|
NC
|
A:HEC903
|
2.0
|
11.4
|
1.0
|
|
ND
|
A:HEC903
|
2.0
|
14.4
|
1.0
|
|
NB
|
A:HEC903
|
2.0
|
13.7
|
1.0
|
|
NA
|
A:HEC903
|
2.1
|
13.1
|
1.0
|
|
CE1
|
A:HIS307
|
3.0
|
13.0
|
1.0
|
|
CD2
|
A:HIS365
|
3.0
|
14.4
|
1.0
|
|
CE1
|
A:HIS365
|
3.0
|
16.1
|
1.0
|
|
C1C
|
A:HEC903
|
3.0
|
13.5
|
1.0
|
|
C1A
|
A:HEC903
|
3.0
|
15.5
|
1.0
|
|
C4C
|
A:HEC903
|
3.0
|
13.6
|
1.0
|
|
CD2
|
A:HIS307
|
3.1
|
13.6
|
1.0
|
|
C4D
|
A:HEC903
|
3.1
|
15.9
|
1.0
|
|
C4B
|
A:HEC903
|
3.1
|
14.9
|
1.0
|
|
C1D
|
A:HEC903
|
3.1
|
12.7
|
1.0
|
|
C1B
|
A:HEC903
|
3.1
|
13.4
|
1.0
|
|
C4A
|
A:HEC903
|
3.1
|
13.3
|
1.0
|
|
CHC
|
A:HEC903
|
3.4
|
11.5
|
1.0
|
|
CHA
|
A:HEC903
|
3.4
|
16.1
|
1.0
|
|
CHD
|
A:HEC903
|
3.4
|
15.2
|
1.0
|
|
CHB
|
A:HEC903
|
3.5
|
13.4
|
1.0
|
|
ND1
|
A:HIS307
|
4.1
|
13.4
|
1.0
|
|
ND1
|
A:HIS365
|
4.1
|
14.3
|
1.0
|
|
CG
|
A:HIS365
|
4.1
|
15.9
|
1.0
|
|
CG
|
A:HIS307
|
4.2
|
12.6
|
1.0
|
|
C2C
|
A:HEC903
|
4.3
|
13.3
|
1.0
|
|
C3C
|
A:HEC903
|
4.3
|
12.0
|
1.0
|
|
C2A
|
A:HEC903
|
4.3
|
14.1
|
1.0
|
|
C2B
|
A:HEC903
|
4.3
|
12.2
|
1.0
|
|
C3A
|
A:HEC903
|
4.3
|
14.7
|
1.0
|
|
C3B
|
A:HEC903
|
4.3
|
11.7
|
1.0
|
|
C3D
|
A:HEC903
|
4.3
|
13.7
|
1.0
|
|
C2D
|
A:HEC903
|
4.3
|
12.6
|
1.0
|
|
Iron binding site 4 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 4 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe904
b:13.3
occ:1.00
|
FE
|
A:HEC904
|
0.0
|
13.3
|
1.0
|
|
NA
|
A:HEC904
|
2.0
|
13.3
|
1.0
|
|
NE2
|
A:HIS460
|
2.0
|
12.8
|
1.0
|
|
NB
|
A:HEC904
|
2.0
|
10.4
|
1.0
|
|
ND
|
A:HEC904
|
2.0
|
12.5
|
1.0
|
|
NC
|
A:HEC904
|
2.1
|
11.6
|
1.0
|
|
NE2
|
A:HIS390
|
2.1
|
12.6
|
1.0
|
|
CD2
|
A:HIS460
|
3.0
|
11.1
|
1.0
|
|
CE1
|
A:HIS390
|
3.0
|
12.1
|
1.0
|
|
CE1
|
A:HIS460
|
3.0
|
15.4
|
1.0
|
|
C1D
|
A:HEC904
|
3.0
|
13.6
|
1.0
|
|
C4A
|
A:HEC904
|
3.0
|
15.0
|
1.0
|
|
C4B
|
A:HEC904
|
3.1
|
14.0
|
1.0
|
|
C1B
|
A:HEC904
|
3.1
|
14.6
|
1.0
|
|
C4C
|
A:HEC904
|
3.1
|
12.3
|
1.0
|
|
C1A
|
A:HEC904
|
3.1
|
12.1
|
1.0
|
|
C1C
|
A:HEC904
|
3.1
|
13.8
|
1.0
|
|
C4D
|
A:HEC904
|
3.1
|
15.0
|
1.0
|
|
CD2
|
A:HIS390
|
3.1
|
12.2
|
1.0
|
|
CHD
|
A:HEC904
|
3.4
|
13.9
|
1.0
|
|
CHB
|
A:HEC904
|
3.4
|
12.6
|
1.0
|
|
CHC
|
A:HEC904
|
3.4
|
14.7
|
1.0
|
|
CHA
|
A:HEC904
|
3.5
|
11.8
|
1.0
|
|
ND1
|
A:HIS460
|
4.1
|
12.4
|
1.0
|
|
CG
|
A:HIS460
|
4.1
|
9.9
|
1.0
|
|
ND1
|
A:HIS390
|
4.1
|
12.3
|
1.0
|
|
CG
|
A:HIS390
|
4.2
|
11.9
|
1.0
|
|
C3B
|
A:HEC904
|
4.3
|
13.4
|
1.0
|
|
C2B
|
A:HEC904
|
4.3
|
14.6
|
1.0
|
|
C3A
|
A:HEC904
|
4.3
|
15.6
|
1.0
|
|
C2D
|
A:HEC904
|
4.3
|
11.0
|
1.0
|
|
C2A
|
A:HEC904
|
4.3
|
13.5
|
1.0
|
|
C2C
|
A:HEC904
|
4.3
|
11.4
|
1.0
|
|
C3D
|
A:HEC904
|
4.3
|
10.9
|
1.0
|
|
C3C
|
A:HEC904
|
4.3
|
10.5
|
1.0
|
|
Iron binding site 5 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 5 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe905
b:18.4
occ:1.00
|
FE
|
A:HEC905
|
0.0
|
18.4
|
1.0
|
|
NE2
|
A:HIS448
|
1.9
|
16.3
|
1.0
|
|
NE2
|
A:HIS420
|
1.9
|
14.8
|
1.0
|
|
NB
|
A:HEC905
|
2.0
|
19.3
|
1.0
|
|
NC
|
A:HEC905
|
2.0
|
17.8
|
1.0
|
|
ND
|
A:HEC905
|
2.0
|
19.6
|
1.0
|
|
NA
|
A:HEC905
|
2.1
|
18.2
|
1.0
|
|
CE1
|
A:HIS420
|
2.7
|
22.0
|
1.0
|
|
CE1
|
A:HIS448
|
2.8
|
22.8
|
1.0
|
|
CD2
|
A:HIS448
|
2.9
|
18.3
|
1.0
|
|
C4C
|
A:HEC905
|
3.0
|
16.8
|
1.0
|
|
C1B
|
A:HEC905
|
3.0
|
22.2
|
1.0
|
|
C1D
|
A:HEC905
|
3.0
|
21.5
|
1.0
|
|
C4B
|
A:HEC905
|
3.0
|
19.3
|
1.0
|
|
C1C
|
A:HEC905
|
3.1
|
18.3
|
1.0
|
|
C4A
|
A:HEC905
|
3.1
|
23.5
|
1.0
|
|
CD2
|
A:HIS420
|
3.1
|
19.0
|
1.0
|
|
C1A
|
A:HEC905
|
3.1
|
24.0
|
1.0
|
|
C4D
|
A:HEC905
|
3.1
|
18.8
|
1.0
|
|
CHD
|
A:HEC905
|
3.4
|
18.2
|
1.0
|
|
CHB
|
A:HEC905
|
3.4
|
21.3
|
1.0
|
|
CHC
|
A:HEC905
|
3.5
|
17.1
|
1.0
|
|
CHA
|
A:HEC905
|
3.5
|
22.6
|
1.0
|
|
ND1
|
A:HIS420
|
3.9
|
21.5
|
1.0
|
|
ND1
|
A:HIS448
|
3.9
|
19.4
|
1.0
|
|
CG
|
A:HIS448
|
4.0
|
18.4
|
1.0
|
|
CG
|
A:HIS420
|
4.1
|
18.6
|
1.0
|
|
C3C
|
A:HEC905
|
4.3
|
16.5
|
1.0
|
|
C2B
|
A:HEC905
|
4.3
|
19.7
|
1.0
|
|
C2C
|
A:HEC905
|
4.3
|
16.7
|
1.0
|
|
C3B
|
A:HEC905
|
4.3
|
16.3
|
1.0
|
|
C2D
|
A:HEC905
|
4.3
|
16.6
|
1.0
|
|
C3A
|
A:HEC905
|
4.3
|
26.6
|
1.0
|
|
C2A
|
A:HEC905
|
4.3
|
22.6
|
1.0
|
|
C3D
|
A:HEC905
|
4.3
|
18.2
|
1.0
|
|
Iron binding site 6 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 6 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe906
b:9.9
occ:1.00
|
FE
|
A:HEC906
|
0.0
|
9.9
|
1.0
|
|
NA
|
A:HEC906
|
2.0
|
8.2
|
1.0
|
|
NC
|
A:HEC906
|
2.0
|
9.4
|
1.0
|
|
NE2
|
A:HIS657
|
2.0
|
8.3
|
1.0
|
|
NE2
|
A:HIS728
|
2.0
|
9.7
|
1.0
|
|
ND
|
A:HEC906
|
2.0
|
8.5
|
1.0
|
|
NB
|
A:HEC906
|
2.0
|
9.0
|
1.0
|
|
CE1
|
A:HIS657
|
2.9
|
10.8
|
1.0
|
|
CE1
|
A:HIS728
|
3.0
|
9.9
|
1.0
|
|
CD2
|
A:HIS728
|
3.0
|
8.6
|
1.0
|
|
C4A
|
A:HEC906
|
3.0
|
7.7
|
1.0
|
|
C1D
|
A:HEC906
|
3.0
|
8.7
|
1.0
|
|
C1A
|
A:HEC906
|
3.0
|
7.5
|
1.0
|
|
C1C
|
A:HEC906
|
3.0
|
10.3
|
1.0
|
|
C4D
|
A:HEC906
|
3.0
|
9.6
|
1.0
|
|
C1B
|
A:HEC906
|
3.0
|
7.2
|
1.0
|
|
C4B
|
A:HEC906
|
3.1
|
12.0
|
1.0
|
|
CD2
|
A:HIS657
|
3.1
|
8.2
|
1.0
|
|
C4C
|
A:HEC906
|
3.1
|
8.9
|
1.0
|
|
CHD
|
A:HEC906
|
3.4
|
9.9
|
1.0
|
|
CHC
|
A:HEC906
|
3.4
|
9.9
|
1.0
|
|
CHB
|
A:HEC906
|
3.4
|
8.7
|
1.0
|
|
CHA
|
A:HEC906
|
3.5
|
8.6
|
1.0
|
|
ND1
|
A:HIS657
|
4.1
|
9.1
|
1.0
|
|
ND1
|
A:HIS728
|
4.1
|
9.7
|
1.0
|
|
CG
|
A:HIS728
|
4.1
|
9.3
|
1.0
|
|
CG
|
A:HIS657
|
4.2
|
10.7
|
1.0
|
|
C3A
|
A:HEC906
|
4.2
|
10.0
|
1.0
|
|
C2A
|
A:HEC906
|
4.2
|
8.2
|
1.0
|
|
C2D
|
A:HEC906
|
4.2
|
8.4
|
1.0
|
|
C3D
|
A:HEC906
|
4.3
|
9.3
|
1.0
|
|
C3C
|
A:HEC906
|
4.3
|
8.1
|
1.0
|
|
C2C
|
A:HEC906
|
4.3
|
10.2
|
1.0
|
|
C2B
|
A:HEC906
|
4.3
|
9.1
|
1.0
|
|
C3B
|
A:HEC906
|
4.3
|
11.6
|
1.0
|
|
Iron binding site 7 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 7 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe907
b:10.0
occ:1.00
|
FE
|
A:HEC907
|
0.0
|
10.0
|
1.0
|
|
ND
|
A:HEC907
|
2.0
|
9.7
|
1.0
|
|
NB
|
A:HEC907
|
2.0
|
9.7
|
1.0
|
|
NE2
|
A:HIS684
|
2.0
|
8.8
|
1.0
|
|
NC
|
A:HEC907
|
2.0
|
9.4
|
1.0
|
|
NA
|
A:HEC907
|
2.0
|
9.3
|
1.0
|
|
NE2
|
A:HIS709
|
2.0
|
12.4
|
1.0
|
|
CE1
|
A:HIS684
|
3.0
|
7.9
|
1.0
|
|
C1D
|
A:HEC907
|
3.0
|
9.5
|
1.0
|
|
C1B
|
A:HEC907
|
3.0
|
11.0
|
1.0
|
|
CE1
|
A:HIS709
|
3.0
|
13.9
|
1.0
|
|
C4C
|
A:HEC907
|
3.0
|
11.8
|
1.0
|
|
CD2
|
A:HIS709
|
3.0
|
12.5
|
1.0
|
|
C1C
|
A:HEC907
|
3.0
|
9.1
|
1.0
|
|
C1A
|
A:HEC907
|
3.0
|
8.0
|
1.0
|
|
C4A
|
A:HEC907
|
3.1
|
10.5
|
1.0
|
|
C4D
|
A:HEC907
|
3.1
|
10.1
|
1.0
|
|
C4B
|
A:HEC907
|
3.1
|
8.9
|
1.0
|
|
CD2
|
A:HIS684
|
3.1
|
7.7
|
1.0
|
|
CHD
|
A:HEC907
|
3.4
|
8.4
|
1.0
|
|
CHB
|
A:HEC907
|
3.4
|
9.7
|
1.0
|
|
CHA
|
A:HEC907
|
3.4
|
7.2
|
1.0
|
|
CHC
|
A:HEC907
|
3.4
|
8.4
|
1.0
|
|
ND1
|
A:HIS684
|
4.1
|
8.6
|
1.0
|
|
ND1
|
A:HIS709
|
4.1
|
11.5
|
1.0
|
|
CG
|
A:HIS709
|
4.2
|
12.5
|
1.0
|
|
CG
|
A:HIS684
|
4.2
|
9.0
|
1.0
|
|
C2B
|
A:HEC907
|
4.2
|
10.9
|
1.0
|
|
C3C
|
A:HEC907
|
4.3
|
9.2
|
1.0
|
|
C2D
|
A:HEC907
|
4.3
|
10.2
|
1.0
|
|
C3A
|
A:HEC907
|
4.3
|
8.5
|
1.0
|
|
C2C
|
A:HEC907
|
4.3
|
8.9
|
1.0
|
|
C3B
|
A:HEC907
|
4.3
|
10.6
|
1.0
|
|
C3D
|
A:HEC907
|
4.3
|
10.0
|
1.0
|
|
C2A
|
A:HEC907
|
4.3
|
9.2
|
1.0
|
|
NH1
|
A:ARG528
|
4.7
|
17.4
|
1.0
|
|
Iron binding site 8 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 8 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe908
b:9.4
occ:1.00
|
FE
|
A:HEC908
|
0.0
|
9.4
|
1.0
|
|
NE2
|
A:HIS703
|
2.0
|
7.5
|
1.0
|
|
NB
|
A:HEC908
|
2.0
|
8.6
|
1.0
|
|
ND
|
A:HEC908
|
2.0
|
7.2
|
1.0
|
|
NC
|
A:HEC908
|
2.0
|
8.2
|
1.0
|
|
NE2
|
A:HIS667
|
2.0
|
7.2
|
1.0
|
|
NA
|
A:HEC908
|
2.0
|
9.2
|
1.0
|
|
CE1
|
A:HIS703
|
3.0
|
7.3
|
1.0
|
|
CD2
|
A:HIS667
|
3.0
|
8.4
|
1.0
|
|
C4D
|
A:HEC908
|
3.0
|
7.8
|
1.0
|
|
C4C
|
A:HEC908
|
3.0
|
7.5
|
1.0
|
|
C4B
|
A:HEC908
|
3.0
|
7.6
|
1.0
|
|
C1C
|
A:HEC908
|
3.0
|
7.9
|
1.0
|
|
CD2
|
A:HIS703
|
3.0
|
7.7
|
1.0
|
|
CE1
|
A:HIS667
|
3.0
|
6.6
|
1.0
|
|
C1A
|
A:HEC908
|
3.1
|
8.3
|
1.0
|
|
C1D
|
A:HEC908
|
3.1
|
9.1
|
1.0
|
|
C1B
|
A:HEC908
|
3.1
|
6.8
|
1.0
|
|
C4A
|
A:HEC908
|
3.1
|
8.4
|
1.0
|
|
CHA
|
A:HEC908
|
3.4
|
8.5
|
1.0
|
|
CHC
|
A:HEC908
|
3.4
|
8.2
|
1.0
|
|
CHD
|
A:HEC908
|
3.5
|
7.7
|
1.0
|
|
CHB
|
A:HEC908
|
3.5
|
7.1
|
1.0
|
|
ND1
|
A:HIS703
|
4.1
|
8.1
|
1.0
|
|
ND1
|
A:HIS667
|
4.1
|
6.6
|
1.0
|
|
CG
|
A:HIS667
|
4.2
|
6.5
|
1.0
|
|
CG
|
A:HIS703
|
4.2
|
7.8
|
1.0
|
|
C3C
|
A:HEC908
|
4.3
|
6.0
|
1.0
|
|
C3B
|
A:HEC908
|
4.3
|
7.5
|
1.0
|
|
C2C
|
A:HEC908
|
4.3
|
6.3
|
1.0
|
|
C2B
|
A:HEC908
|
4.3
|
7.0
|
1.0
|
|
C3D
|
A:HEC908
|
4.3
|
5.8
|
1.0
|
|
C2A
|
A:HEC908
|
4.3
|
7.8
|
1.0
|
|
C2D
|
A:HEC908
|
4.3
|
8.0
|
1.0
|
|
C3A
|
A:HEC908
|
4.3
|
8.1
|
1.0
|
|
ND2
|
A:ASN689
|
4.6
|
9.2
|
1.0
|
|
Iron binding site 9 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 9 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe909
b:13.3
occ:1.00
|
FE
|
A:HEC909
|
0.0
|
13.3
|
1.0
|
|
NC
|
A:HEC909
|
2.0
|
11.0
|
1.0
|
|
NE2
|
A:HIS755
|
2.0
|
14.3
|
1.0
|
|
NA
|
A:HEC909
|
2.0
|
13.5
|
1.0
|
|
NE2
|
A:HIS725
|
2.0
|
13.0
|
1.0
|
|
NB
|
A:HEC909
|
2.1
|
12.4
|
1.0
|
|
ND
|
A:HEC909
|
2.1
|
11.3
|
1.0
|
|
CE1
|
A:HIS755
|
3.0
|
13.5
|
1.0
|
|
CE1
|
A:HIS725
|
3.0
|
18.5
|
1.0
|
|
C4C
|
A:HEC909
|
3.0
|
11.6
|
1.0
|
|
C4A
|
A:HEC909
|
3.0
|
15.4
|
1.0
|
|
C1D
|
A:HEC909
|
3.0
|
12.5
|
1.0
|
|
C1B
|
A:HEC909
|
3.0
|
14.0
|
1.0
|
|
C1A
|
A:HEC909
|
3.1
|
14.0
|
1.0
|
|
CD2
|
A:HIS755
|
3.1
|
12.3
|
1.0
|
|
CD2
|
A:HIS725
|
3.1
|
13.1
|
1.0
|
|
C1C
|
A:HEC909
|
3.1
|
10.7
|
1.0
|
|
C4D
|
A:HEC909
|
3.1
|
12.2
|
1.0
|
|
C4B
|
A:HEC909
|
3.1
|
13.6
|
1.0
|
|
CHD
|
A:HEC909
|
3.4
|
10.9
|
1.0
|
|
CHB
|
A:HEC909
|
3.4
|
18.0
|
1.0
|
|
CHA
|
A:HEC909
|
3.5
|
13.1
|
1.0
|
|
CHC
|
A:HEC909
|
3.5
|
12.0
|
1.0
|
|
ND1
|
A:HIS755
|
4.1
|
12.3
|
1.0
|
|
ND1
|
A:HIS725
|
4.1
|
15.3
|
1.0
|
|
CG
|
A:HIS755
|
4.2
|
13.1
|
1.0
|
|
CG
|
A:HIS725
|
4.2
|
13.0
|
1.0
|
|
C3C
|
A:HEC909
|
4.3
|
10.2
|
1.0
|
|
C3A
|
A:HEC909
|
4.3
|
13.4
|
1.0
|
|
C2B
|
A:HEC909
|
4.3
|
14.5
|
1.0
|
|
C2C
|
A:HEC909
|
4.3
|
12.9
|
1.0
|
|
C2D
|
A:HEC909
|
4.3
|
11.5
|
1.0
|
|
C2A
|
A:HEC909
|
4.3
|
11.7
|
1.0
|
|
C3D
|
A:HEC909
|
4.3
|
9.9
|
1.0
|
|
C3B
|
A:HEC909
|
4.3
|
14.8
|
1.0
|
|
Iron binding site 10 out
of 11 in 3ucp
Go back to
Iron Binding Sites List in 3ucp
Iron binding site 10 out
of 11 in the Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Outer Membrane Endecaheme Cytochrome Unda From Shewanella Sp. Hrcr-6 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe910
b:18.4
occ:1.00
|
FE
|
A:HEC910
|
0.0
|
18.4
|
1.0
|
|
NE2
|
A:HIS789
|
1.9
|
19.4
|
1.0
|
|
NE2
|
A:HIS839
|
1.9
|
15.2
|
1.0
|
|
NB
|
A:HEC910
|
2.0
|
17.3
|
1.0
|
|
ND
|
A:HEC910
|
2.0
|
20.1
|
1.0
|
|
NA
|
A:HEC910
|
2.1
|
17.0
|
1.0
|
|
NC
|
A:HEC910
|
2.1
|
14.6
|
1.0
|
|
CE1
|
A:HIS789
|
2.8
|
22.3
|
1.0
|
|
CE1
|
A:HIS839
|
2.8
|
21.3
|
1.0
|
|
CD2
|
A:HIS839
|
2.9
|
18.9
|
1.0
|
|
CD2
|
A:HIS789
|
3.0
|
21.3
|
1.0
|
|
C1D
|
A:HEC910
|
3.0
|
21.1
|
1.0
|
|
C4A
|
A:HEC910
|
3.0
|
22.0
|
1.0
|
|
C4B
|
A:HEC910
|
3.1
|
19.6
|
1.0
|
|
C4D
|
A:HEC910
|
3.1
|
25.9
|
1.0
|
|
C1C
|
A:HEC910
|
3.1
|
17.1
|
1.0
|
|
C1B
|
A:HEC910
|
3.1
|
22.4
|
1.0
|
|
C1A
|
A:HEC910
|
3.1
|
22.8
|
1.0
|
|
C4C
|
A:HEC910
|
3.1
|
17.4
|
1.0
|
|
CHC
|
A:HEC910
|
3.4
|
17.1
|
1.0
|
|
CHD
|
A:HEC910
|
3.4
|
19.2
|
1.0
|
|
CHB
|
A:HEC910
|
3.4
|
22.0
|
1.0
|
|
CHA
|
A:HEC910
|
3.4
|
24.0
|
1.0
|
|
ND1
|
A:HIS789
|
3.9
|
22.4
|
1.0
|
|
ND1
|
A:HIS839
|
4.0
|
18.4
|
1.0
|
|
CG
|
A:HIS789
|
4.0
|
20.5
|
1.0
|
|
CG
|
A:HIS839
|
4.0
|
18.7
|
1.0
|
|
C3A
|
A:HEC910
|
4.3
|
22.5
|
1.0
|
|
C2D
|
A:HEC910
|
4.3
|
23.4
|
1.0
|
|
C2A
|
A:HEC910
|
4.3
|
26.3
|
1.0
|
|
C2B
|
A:HEC910
|
4.3
|
21.0
|
1.0
|
|
C3C
|
A:HEC910
|
4.3
|
12.4
|
1.0
|
|
C2C
|
A:HEC910
|
4.3
|
16.2
|
1.0
|
|
C3D
|
A:HEC910
|
4.3
|
24.9
|
1.0
|
|
C3B
|
A:HEC910
|
4.3
|
19.5
|
1.0
|
|
CBB
|
A:HEC909
|
4.6
|
13.7
|
1.0
|
|
Reference:
M.J.Edwards,
A.Hall,
L.Shi,
J.K.Fredrickson,
J.M.Zachara,
J.N.Butt,
D.J.Richardson,
T.A.Clarke.
The Crystal Structure of the Extracellular 11-Heme Cytochrome Unda Reveals A Conserved 10-Heme Motif and Defined Binding Site For Soluble Iron Chelates. Structure V. 20 1275 2012.
ISSN: ISSN 0969-2126
PubMed: 22682743
DOI: 10.1016/J.STR.2012.04.016
Page generated: Sun Dec 13 15:23:03 2020
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