Iron in PDB 3uhb: Hbi (R104K) Co Bound
Protein crystallography data
The structure of Hbi (R104K) Co Bound, PDB code: 3uhb
was solved by
Z.Ren,
V.Srajer,
J.E.Knapp,
W.E.Royer Jr.,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.14 /
1.60
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
93.100,
43.840,
83.390,
90.00,
121.97,
90.00
|
R / Rfree (%)
|
19.4 /
21.1
|
Iron Binding Sites:
The binding sites of Iron atom in the Hbi (R104K) Co Bound
(pdb code 3uhb). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Hbi (R104K) Co Bound, PDB code: 3uhb:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 3uhb
Go back to
Iron Binding Sites List in 3uhb
Iron binding site 1 out
of 2 in the Hbi (R104K) Co Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Hbi (R104K) Co Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe147
b:12.5
occ:1.00
|
FE
|
A:HEM147
|
0.0
|
12.5
|
1.0
|
C
|
A:CMO148
|
1.9
|
11.4
|
1.0
|
NC
|
A:HEM147
|
2.0
|
7.9
|
1.0
|
ND
|
A:HEM147
|
2.0
|
13.5
|
1.0
|
NB
|
A:HEM147
|
2.0
|
14.0
|
1.0
|
NA
|
A:HEM147
|
2.0
|
9.8
|
1.0
|
NE2
|
A:HIS101
|
2.1
|
11.6
|
1.0
|
CE1
|
A:HIS101
|
3.0
|
9.8
|
1.0
|
C1C
|
A:HEM147
|
3.1
|
10.5
|
1.0
|
C1A
|
A:HEM147
|
3.1
|
12.4
|
1.0
|
C4D
|
A:HEM147
|
3.1
|
12.5
|
1.0
|
C1D
|
A:HEM147
|
3.1
|
12.5
|
1.0
|
C1B
|
A:HEM147
|
3.1
|
12.2
|
1.0
|
C4B
|
A:HEM147
|
3.1
|
10.4
|
1.0
|
C4C
|
A:HEM147
|
3.1
|
12.5
|
1.0
|
C4A
|
A:HEM147
|
3.1
|
12.6
|
1.0
|
O
|
A:CMO148
|
3.1
|
16.6
|
1.0
|
CD2
|
A:HIS101
|
3.1
|
10.6
|
1.0
|
CHA
|
A:HEM147
|
3.4
|
12.9
|
1.0
|
CHC
|
A:HEM147
|
3.4
|
11.3
|
1.0
|
CHD
|
A:HEM147
|
3.5
|
12.1
|
1.0
|
CHB
|
A:HEM147
|
3.5
|
12.4
|
1.0
|
ND1
|
A:HIS101
|
4.2
|
12.1
|
1.0
|
CG
|
A:HIS101
|
4.2
|
11.5
|
1.0
|
C2C
|
A:HEM147
|
4.3
|
11.9
|
1.0
|
C2A
|
A:HEM147
|
4.3
|
11.2
|
1.0
|
C3D
|
A:HEM147
|
4.3
|
14.6
|
1.0
|
C3A
|
A:HEM147
|
4.3
|
11.6
|
1.0
|
C2B
|
A:HEM147
|
4.3
|
13.2
|
1.0
|
C2D
|
A:HEM147
|
4.3
|
12.7
|
1.0
|
C3C
|
A:HEM147
|
4.3
|
11.5
|
1.0
|
C3B
|
A:HEM147
|
4.3
|
14.4
|
1.0
|
CE1
|
A:HIS69
|
4.8
|
16.3
|
1.0
|
CE1
|
A:PHE111
|
4.9
|
15.2
|
1.0
|
CD1
|
A:LEU73
|
5.0
|
16.0
|
1.0
|
|
Iron binding site 2 out
of 2 in 3uhb
Go back to
Iron Binding Sites List in 3uhb
Iron binding site 2 out
of 2 in the Hbi (R104K) Co Bound
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Hbi (R104K) Co Bound within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:10.8
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
10.8
|
1.0
|
C
|
B:CMO148
|
1.9
|
10.7
|
1.0
|
NB
|
B:HEM147
|
2.0
|
11.0
|
1.0
|
NA
|
B:HEM147
|
2.0
|
12.1
|
1.0
|
NC
|
B:HEM147
|
2.0
|
12.4
|
1.0
|
ND
|
B:HEM147
|
2.0
|
11.1
|
1.0
|
NE2
|
B:HIS101
|
2.1
|
11.1
|
1.0
|
C1A
|
B:HEM147
|
3.1
|
12.4
|
1.0
|
C4B
|
B:HEM147
|
3.1
|
12.9
|
1.0
|
CE1
|
B:HIS101
|
3.1
|
12.6
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
11.3
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
12.3
|
1.0
|
C1C
|
B:HEM147
|
3.1
|
10.2
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
10.5
|
1.0
|
CD2
|
B:HIS101
|
3.1
|
9.9
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
10.5
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
11.4
|
1.0
|
O
|
B:CMO148
|
3.1
|
15.6
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
12.4
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
11.8
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
12.4
|
1.0
|
CHD
|
B:HEM147
|
3.5
|
11.3
|
1.0
|
ND1
|
B:HIS101
|
4.2
|
11.1
|
1.0
|
CG
|
B:HIS101
|
4.2
|
11.7
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
13.4
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
13.1
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
12.3
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
11.2
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
11.9
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
11.7
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
11.9
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
11.1
|
1.0
|
CE1
|
B:HIS69
|
4.9
|
13.6
|
1.0
|
CD1
|
B:LEU73
|
4.9
|
15.4
|
1.0
|
|
Reference:
Z.Ren,
V.Srajer,
J.E.Knapp,
W.E.Royer.
Cooperative Macromolecular Device Revealed By Meta-Analysis of Static and Time-Resolved Structures. Proc.Natl.Acad.Sci.Usa V. 109 107 2012.
ISSN: ISSN 0027-8424
PubMed: 22171006
DOI: 10.1073/PNAS.1109213108
Page generated: Sun Aug 4 20:57:43 2024
|