Iron in PDB 3uhq: Hbi (L36A) Deoxy
Protein crystallography data
The structure of Hbi (L36A) Deoxy, PDB code: 3uhq
was solved by
Z.Ren,
V.Srajer,
J.E.Knapp,
W.E.Royer Jr.,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.68 /
1.95
|
Space group
|
C 2 2 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
91.760,
44.360,
143.820,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.4 /
18.6
|
Iron Binding Sites:
The binding sites of Iron atom in the Hbi (L36A) Deoxy
(pdb code 3uhq). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Hbi (L36A) Deoxy, PDB code: 3uhq:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 3uhq
Go back to
Iron Binding Sites List in 3uhq
Iron binding site 1 out
of 2 in the Hbi (L36A) Deoxy
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Hbi (L36A) Deoxy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe147
b:15.8
occ:1.00
|
FE
|
A:HEM147
|
0.0
|
15.8
|
1.0
|
NB
|
A:HEM147
|
2.0
|
14.0
|
1.0
|
NC
|
A:HEM147
|
2.0
|
13.6
|
1.0
|
ND
|
A:HEM147
|
2.0
|
14.8
|
1.0
|
NA
|
A:HEM147
|
2.0
|
15.3
|
1.0
|
NE2
|
A:HIS101
|
2.1
|
16.3
|
1.0
|
CE1
|
A:HIS101
|
3.0
|
13.8
|
1.0
|
C4C
|
A:HEM147
|
3.0
|
13.9
|
1.0
|
C4B
|
A:HEM147
|
3.0
|
12.5
|
1.0
|
C1B
|
A:HEM147
|
3.1
|
13.0
|
1.0
|
C1D
|
A:HEM147
|
3.1
|
15.0
|
1.0
|
C1C
|
A:HEM147
|
3.1
|
13.9
|
1.0
|
C4A
|
A:HEM147
|
3.1
|
10.8
|
1.0
|
C4D
|
A:HEM147
|
3.1
|
13.7
|
1.0
|
C1A
|
A:HEM147
|
3.1
|
13.7
|
1.0
|
CD2
|
A:HIS101
|
3.1
|
14.5
|
1.0
|
CHD
|
A:HEM147
|
3.4
|
14.2
|
1.0
|
CHC
|
A:HEM147
|
3.5
|
15.9
|
1.0
|
CHB
|
A:HEM147
|
3.5
|
11.0
|
1.0
|
CHA
|
A:HEM147
|
3.5
|
12.4
|
1.0
|
O
|
A:HOH161
|
3.7
|
21.5
|
1.0
|
ND1
|
A:HIS101
|
4.2
|
15.1
|
1.0
|
CG
|
A:HIS101
|
4.3
|
13.5
|
1.0
|
C3B
|
A:HEM147
|
4.3
|
10.3
|
1.0
|
C2B
|
A:HEM147
|
4.3
|
15.1
|
1.0
|
C3C
|
A:HEM147
|
4.3
|
14.1
|
1.0
|
C3A
|
A:HEM147
|
4.3
|
11.6
|
1.0
|
C2D
|
A:HEM147
|
4.3
|
14.2
|
1.0
|
C3D
|
A:HEM147
|
4.3
|
16.1
|
1.0
|
C2C
|
A:HEM147
|
4.3
|
14.6
|
1.0
|
C2A
|
A:HEM147
|
4.3
|
12.8
|
1.0
|
CE1
|
A:HIS69
|
4.5
|
18.5
|
1.0
|
CZ
|
A:PHE97
|
4.8
|
17.0
|
1.0
|
NH1
|
A:ARG104
|
4.8
|
20.1
|
1.0
|
NE2
|
A:HIS69
|
5.0
|
14.2
|
1.0
|
|
Iron binding site 2 out
of 2 in 3uhq
Go back to
Iron Binding Sites List in 3uhq
Iron binding site 2 out
of 2 in the Hbi (L36A) Deoxy
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Hbi (L36A) Deoxy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:14.6
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
14.6
|
1.0
|
NC
|
B:HEM147
|
2.0
|
14.0
|
1.0
|
NA
|
B:HEM147
|
2.0
|
13.0
|
1.0
|
ND
|
B:HEM147
|
2.0
|
13.2
|
1.0
|
NB
|
B:HEM147
|
2.0
|
13.3
|
1.0
|
NE2
|
B:HIS101
|
2.1
|
14.8
|
1.0
|
C4C
|
B:HEM147
|
3.1
|
16.0
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
12.5
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
14.5
|
1.0
|
CE1
|
B:HIS101
|
3.1
|
15.3
|
1.0
|
C1A
|
B:HEM147
|
3.1
|
13.1
|
1.0
|
C1B
|
B:HEM147
|
3.1
|
12.7
|
1.0
|
C4B
|
B:HEM147
|
3.1
|
12.1
|
1.0
|
C1C
|
B:HEM147
|
3.1
|
14.6
|
1.0
|
C4D
|
B:HEM147
|
3.1
|
12.6
|
1.0
|
CD2
|
B:HIS101
|
3.1
|
14.2
|
1.0
|
CHD
|
B:HEM147
|
3.4
|
15.1
|
1.0
|
CHB
|
B:HEM147
|
3.5
|
12.6
|
1.0
|
CHC
|
B:HEM147
|
3.5
|
15.4
|
1.0
|
CHA
|
B:HEM147
|
3.5
|
12.8
|
1.0
|
O
|
B:HOH157
|
3.7
|
18.8
|
1.0
|
ND1
|
B:HIS101
|
4.2
|
14.1
|
1.0
|
CG
|
B:HIS101
|
4.3
|
14.8
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
12.7
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
10.2
|
1.0
|
C2D
|
B:HEM147
|
4.3
|
15.5
|
1.0
|
C2C
|
B:HEM147
|
4.3
|
15.7
|
1.0
|
C3D
|
B:HEM147
|
4.3
|
14.5
|
1.0
|
C3C
|
B:HEM147
|
4.3
|
15.0
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
16.4
|
1.0
|
C2B
|
B:HEM147
|
4.3
|
14.1
|
1.0
|
CE1
|
B:HIS69
|
4.5
|
15.6
|
1.0
|
CZ
|
B:PHE97
|
4.8
|
14.6
|
1.0
|
NE2
|
B:HIS69
|
4.9
|
13.9
|
1.0
|
NH1
|
B:ARG104
|
4.9
|
20.7
|
1.0
|
|
Reference:
Z.Ren,
V.Srajer,
J.E.Knapp,
W.E.Royer.
Cooperative Macromolecular Device Revealed By Meta-Analysis of Static and Time-Resolved Structures. Proc.Natl.Acad.Sci.Usa V. 109 107 2012.
ISSN: ISSN 0027-8424
PubMed: 22171006
DOI: 10.1073/PNAS.1109213108
Page generated: Sun Aug 4 21:11:59 2024
|