Iron in PDB 3uu9: Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
Protein crystallography data
The structure of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase, PDB code: 3uu9
was solved by
A.A.Trofimov,
K.M.Polyakov,
T.V.Tikhonova,
A.V.Tikhonov,
P.V.Dorovatovskii,
V.O.Popov,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
100.00 /
2.20
|
|
Space group
|
P 21 3
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
191.387,
191.387,
191.387,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.7 /
18.4
|
Other elements in 3uu9:
The structure of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
(pdb code 3uu9). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase, PDB code: 3uu9:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 1 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe601
b:31.2
occ:1.00
|
FE
|
A:HEC601
|
0.0
|
31.2
|
1.0
|
|
NZ
|
A:LYS188
|
1.9
|
31.8
|
1.0
|
|
NA
|
A:HEC601
|
2.0
|
29.4
|
1.0
|
|
NB
|
A:HEC601
|
2.0
|
29.5
|
1.0
|
|
O
|
A:HOH1000
|
2.0
|
30.3
|
1.0
|
|
NC
|
A:HEC601
|
2.0
|
30.8
|
1.0
|
|
ND
|
A:HEC601
|
2.1
|
30.6
|
1.0
|
|
CE
|
A:LYS188
|
3.0
|
30.4
|
1.0
|
|
C1A
|
A:HEC601
|
3.0
|
30.4
|
1.0
|
|
C4B
|
A:HEC601
|
3.0
|
31.8
|
1.0
|
|
C4A
|
A:HEC601
|
3.0
|
30.3
|
1.0
|
|
C1B
|
A:HEC601
|
3.0
|
32.6
|
1.0
|
|
C1C
|
A:HEC601
|
3.0
|
31.1
|
1.0
|
|
C4D
|
A:HEC601
|
3.1
|
30.1
|
1.0
|
|
C4C
|
A:HEC601
|
3.1
|
30.4
|
1.0
|
|
C1D
|
A:HEC601
|
3.1
|
32.1
|
1.0
|
|
CHC
|
A:HEC601
|
3.4
|
30.3
|
1.0
|
|
CHA
|
A:HEC601
|
3.4
|
29.8
|
1.0
|
|
CHB
|
A:HEC601
|
3.4
|
30.0
|
1.0
|
|
CHD
|
A:HEC601
|
3.5
|
31.7
|
1.0
|
|
C2A
|
A:HEC601
|
4.2
|
27.9
|
1.0
|
|
C3A
|
A:HEC601
|
4.2
|
29.5
|
1.0
|
|
C2B
|
A:HEC601
|
4.2
|
31.8
|
1.0
|
|
C3B
|
A:HEC601
|
4.2
|
32.3
|
1.0
|
|
NE2
|
A:HIS361
|
4.3
|
29.6
|
1.0
|
|
C2C
|
A:HEC601
|
4.3
|
31.2
|
1.0
|
|
C3C
|
A:HEC601
|
4.3
|
28.5
|
1.0
|
|
C3D
|
A:HEC601
|
4.3
|
30.7
|
1.0
|
|
C2D
|
A:HEC601
|
4.3
|
31.0
|
1.0
|
|
CD
|
A:LYS188
|
4.4
|
29.8
|
1.0
|
|
O
|
A:HOH778
|
4.4
|
34.3
|
1.0
|
|
O
|
A:HOH756
|
4.6
|
36.6
|
1.0
|
|
O
|
A:HOH848
|
4.6
|
40.6
|
1.0
|
|
CMD
|
A:HEC603
|
4.8
|
27.2
|
1.0
|
|
NH2
|
A:ARG131
|
4.9
|
28.2
|
1.0
|
|
CD2
|
A:HIS361
|
5.0
|
29.8
|
1.0
|
|
Iron binding site 2 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 2 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe602
b:30.5
occ:1.00
|
FE
|
A:HEC602
|
0.0
|
30.5
|
1.0
|
|
NE2
|
A:HIS231
|
1.9
|
30.2
|
1.0
|
|
NE2
|
A:HIS398
|
1.9
|
31.3
|
1.0
|
|
NC
|
A:HEC602
|
2.0
|
25.7
|
1.0
|
|
NB
|
A:HEC602
|
2.0
|
24.2
|
1.0
|
|
NA
|
A:HEC602
|
2.0
|
27.5
|
1.0
|
|
ND
|
A:HEC602
|
2.1
|
28.9
|
1.0
|
|
CD2
|
A:HIS231
|
2.9
|
25.0
|
1.0
|
|
CD2
|
A:HIS398
|
2.9
|
30.7
|
1.0
|
|
CE1
|
A:HIS231
|
2.9
|
30.0
|
1.0
|
|
CE1
|
A:HIS398
|
2.9
|
31.9
|
1.0
|
|
C1C
|
A:HEC602
|
3.0
|
27.2
|
1.0
|
|
C4B
|
A:HEC602
|
3.0
|
26.0
|
1.0
|
|
C1B
|
A:HEC602
|
3.0
|
25.6
|
1.0
|
|
C4A
|
A:HEC602
|
3.0
|
27.9
|
1.0
|
|
C1A
|
A:HEC602
|
3.0
|
28.9
|
1.0
|
|
C4C
|
A:HEC602
|
3.0
|
27.4
|
1.0
|
|
C4D
|
A:HEC602
|
3.1
|
29.2
|
1.0
|
|
C1D
|
A:HEC602
|
3.1
|
30.4
|
1.0
|
|
CHC
|
A:HEC602
|
3.3
|
27.2
|
1.0
|
|
CHB
|
A:HEC602
|
3.4
|
26.5
|
1.0
|
|
CHA
|
A:HEC602
|
3.4
|
31.1
|
1.0
|
|
CHD
|
A:HEC602
|
3.4
|
28.8
|
1.0
|
|
ND1
|
A:HIS231
|
4.0
|
30.1
|
1.0
|
|
CG
|
A:HIS231
|
4.0
|
28.2
|
1.0
|
|
ND1
|
A:HIS398
|
4.0
|
30.3
|
1.0
|
|
CG
|
A:HIS398
|
4.0
|
33.4
|
1.0
|
|
C2C
|
A:HEC602
|
4.2
|
27.1
|
1.0
|
|
C2B
|
A:HEC602
|
4.2
|
25.5
|
1.0
|
|
C3B
|
A:HEC602
|
4.2
|
25.7
|
1.0
|
|
C3A
|
A:HEC602
|
4.2
|
26.9
|
1.0
|
|
C2A
|
A:HEC602
|
4.2
|
28.8
|
1.0
|
|
C3D
|
A:HEC602
|
4.3
|
28.7
|
1.0
|
|
C3C
|
A:HEC602
|
4.3
|
26.6
|
1.0
|
|
C2D
|
A:HEC602
|
4.3
|
27.8
|
1.0
|
|
CMA
|
A:HEC607
|
4.9
|
27.7
|
1.0
|
|
Iron binding site 3 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 3 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe603
b:29.6
occ:1.00
|
FE
|
A:HEC603
|
0.0
|
29.6
|
1.0
|
|
NE2
|
A:HIS119
|
1.9
|
29.0
|
1.0
|
|
NE2
|
A:HIS300
|
1.9
|
30.1
|
1.0
|
|
ND
|
A:HEC603
|
2.0
|
26.5
|
1.0
|
|
NB
|
A:HEC603
|
2.0
|
28.1
|
1.0
|
|
NA
|
A:HEC603
|
2.0
|
31.2
|
1.0
|
|
NC
|
A:HEC603
|
2.1
|
27.6
|
1.0
|
|
CE1
|
A:HIS119
|
2.8
|
26.4
|
1.0
|
|
CE1
|
A:HIS300
|
2.9
|
26.9
|
1.0
|
|
CD2
|
A:HIS300
|
2.9
|
28.4
|
1.0
|
|
C1D
|
A:HEC603
|
3.0
|
28.6
|
1.0
|
|
C1B
|
A:HEC603
|
3.0
|
29.8
|
1.0
|
|
C4A
|
A:HEC603
|
3.0
|
30.7
|
1.0
|
|
C4D
|
A:HEC603
|
3.0
|
31.2
|
1.0
|
|
C1A
|
A:HEC603
|
3.0
|
27.6
|
1.0
|
|
CD2
|
A:HIS119
|
3.0
|
27.5
|
1.0
|
|
C4C
|
A:HEC603
|
3.1
|
31.7
|
1.0
|
|
C4B
|
A:HEC603
|
3.1
|
29.4
|
1.0
|
|
C1C
|
A:HEC603
|
3.1
|
28.9
|
1.0
|
|
CHB
|
A:HEC603
|
3.4
|
29.6
|
1.0
|
|
CHD
|
A:HEC603
|
3.4
|
29.5
|
1.0
|
|
CHA
|
A:HEC603
|
3.4
|
28.7
|
1.0
|
|
CHC
|
A:HEC603
|
3.5
|
28.8
|
1.0
|
|
ND1
|
A:HIS119
|
4.0
|
26.4
|
1.0
|
|
ND1
|
A:HIS300
|
4.0
|
22.9
|
1.0
|
|
CG
|
A:HIS300
|
4.1
|
27.1
|
1.0
|
|
CG
|
A:HIS119
|
4.1
|
28.0
|
1.0
|
|
C3A
|
A:HEC603
|
4.2
|
27.1
|
1.0
|
|
C2A
|
A:HEC603
|
4.2
|
28.6
|
1.0
|
|
C2D
|
A:HEC603
|
4.2
|
27.1
|
1.0
|
|
C2B
|
A:HEC603
|
4.2
|
28.4
|
1.0
|
|
C3D
|
A:HEC603
|
4.2
|
27.9
|
1.0
|
|
C3B
|
A:HEC603
|
4.3
|
29.9
|
1.0
|
|
C3C
|
A:HEC603
|
4.3
|
28.9
|
1.0
|
|
C2C
|
A:HEC603
|
4.3
|
28.4
|
1.0
|
|
CMD
|
A:HEC601
|
4.9
|
26.1
|
1.0
|
|
Iron binding site 4 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 4 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe604
b:30.0
occ:1.00
|
FE
|
A:HEC604
|
0.0
|
30.0
|
1.0
|
|
NE2
|
A:HIS491
|
1.9
|
30.5
|
1.0
|
|
NE2
|
A:HIS383
|
1.9
|
29.8
|
1.0
|
|
NA
|
A:HEC604
|
2.0
|
26.9
|
1.0
|
|
NB
|
A:HEC604
|
2.0
|
30.5
|
1.0
|
|
NC
|
A:HEC604
|
2.0
|
29.8
|
1.0
|
|
ND
|
A:HEC604
|
2.1
|
28.8
|
1.0
|
|
CE1
|
A:HIS491
|
2.8
|
28.5
|
1.0
|
|
CE1
|
A:HIS383
|
2.9
|
28.6
|
1.0
|
|
CD2
|
A:HIS383
|
2.9
|
28.3
|
1.0
|
|
CD2
|
A:HIS491
|
2.9
|
26.2
|
1.0
|
|
C1A
|
A:HEC604
|
3.0
|
28.1
|
1.0
|
|
C4A
|
A:HEC604
|
3.0
|
27.1
|
1.0
|
|
C1B
|
A:HEC604
|
3.0
|
30.1
|
1.0
|
|
C4D
|
A:HEC604
|
3.0
|
26.9
|
1.0
|
|
C1C
|
A:HEC604
|
3.1
|
33.1
|
1.0
|
|
C4C
|
A:HEC604
|
3.1
|
34.0
|
1.0
|
|
C4B
|
A:HEC604
|
3.1
|
30.9
|
1.0
|
|
C1D
|
A:HEC604
|
3.1
|
29.8
|
1.0
|
|
CHA
|
A:HEC604
|
3.3
|
29.1
|
1.0
|
|
CHB
|
A:HEC604
|
3.4
|
28.1
|
1.0
|
|
CHC
|
A:HEC604
|
3.4
|
34.0
|
1.0
|
|
CHD
|
A:HEC604
|
3.4
|
31.6
|
1.0
|
|
ND1
|
A:HIS491
|
3.9
|
28.8
|
1.0
|
|
ND1
|
A:HIS383
|
4.0
|
26.4
|
1.0
|
|
CG
|
A:HIS491
|
4.0
|
30.9
|
1.0
|
|
CG
|
A:HIS383
|
4.0
|
30.9
|
1.0
|
|
C2A
|
A:HEC604
|
4.2
|
27.9
|
1.0
|
|
C3A
|
A:HEC604
|
4.2
|
26.2
|
1.0
|
|
C2B
|
A:HEC604
|
4.2
|
30.1
|
1.0
|
|
C3D
|
A:HEC604
|
4.3
|
28.5
|
1.0
|
|
C3B
|
A:HEC604
|
4.3
|
30.4
|
1.0
|
|
C2C
|
A:HEC604
|
4.3
|
33.5
|
1.0
|
|
C2D
|
A:HEC604
|
4.3
|
28.5
|
1.0
|
|
C3C
|
A:HEC604
|
4.3
|
31.6
|
1.0
|
|
CB
|
A:SER487
|
4.9
|
31.6
|
1.0
|
|
Iron binding site 5 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 5 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe605
b:35.2
occ:1.00
|
FE
|
A:HEC605
|
0.0
|
35.2
|
1.0
|
|
NE2
|
A:HIS415
|
1.9
|
34.1
|
1.0
|
|
NE2
|
A:HIS372
|
1.9
|
33.6
|
1.0
|
|
NB
|
A:HEC605
|
2.0
|
35.4
|
1.0
|
|
NA
|
A:HEC605
|
2.1
|
36.2
|
1.0
|
|
ND
|
A:HEC605
|
2.1
|
38.7
|
1.0
|
|
NC
|
A:HEC605
|
2.1
|
36.2
|
1.0
|
|
CE1
|
A:HIS372
|
2.8
|
33.7
|
1.0
|
|
CE1
|
A:HIS415
|
2.8
|
37.4
|
1.0
|
|
CD2
|
A:HIS415
|
2.9
|
34.0
|
1.0
|
|
CD2
|
A:HIS372
|
3.0
|
31.9
|
1.0
|
|
C1B
|
A:HEC605
|
3.0
|
36.3
|
1.0
|
|
C4B
|
A:HEC605
|
3.0
|
35.8
|
1.0
|
|
C4A
|
A:HEC605
|
3.0
|
33.9
|
1.0
|
|
C1A
|
A:HEC605
|
3.0
|
34.9
|
1.0
|
|
C4D
|
A:HEC605
|
3.0
|
38.8
|
1.0
|
|
C1C
|
A:HEC605
|
3.1
|
36.9
|
1.0
|
|
C1D
|
A:HEC605
|
3.1
|
42.1
|
1.0
|
|
C4C
|
A:HEC605
|
3.1
|
39.7
|
1.0
|
|
CHB
|
A:HEC605
|
3.4
|
35.4
|
1.0
|
|
CHA
|
A:HEC605
|
3.4
|
35.1
|
1.0
|
|
CHC
|
A:HEC605
|
3.4
|
36.5
|
1.0
|
|
CHD
|
A:HEC605
|
3.5
|
38.5
|
1.0
|
|
ND1
|
A:HIS415
|
4.0
|
37.3
|
1.0
|
|
ND1
|
A:HIS372
|
4.0
|
30.7
|
1.0
|
|
CG
|
A:HIS415
|
4.0
|
36.2
|
1.0
|
|
CG
|
A:HIS372
|
4.1
|
32.4
|
1.0
|
|
C2B
|
A:HEC605
|
4.2
|
35.9
|
1.0
|
|
C3B
|
A:HEC605
|
4.2
|
35.1
|
1.0
|
|
C2A
|
A:HEC605
|
4.2
|
35.5
|
1.0
|
|
C3A
|
A:HEC605
|
4.2
|
36.1
|
1.0
|
|
C3D
|
A:HEC605
|
4.3
|
42.3
|
1.0
|
|
C2C
|
A:HEC605
|
4.3
|
36.7
|
1.0
|
|
C2D
|
A:HEC605
|
4.3
|
43.4
|
1.0
|
|
C3C
|
A:HEC605
|
4.4
|
39.1
|
1.0
|
|
CBC
|
A:HEC604
|
4.9
|
28.6
|
1.0
|
|
Iron binding site 6 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 6 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe606
b:30.4
occ:1.00
|
FE
|
A:HEC606
|
0.0
|
30.4
|
1.0
|
|
NE2
|
A:HIS234
|
1.9
|
28.6
|
1.0
|
|
NE2
|
A:HIS39
|
1.9
|
30.7
|
1.0
|
|
NB
|
A:HEC606
|
2.0
|
32.5
|
1.0
|
|
NA
|
A:HEC606
|
2.0
|
33.2
|
1.0
|
|
NC
|
A:HEC606
|
2.1
|
33.3
|
1.0
|
|
ND
|
A:HEC606
|
2.1
|
31.4
|
1.0
|
|
CE1
|
A:HIS39
|
2.9
|
29.4
|
1.0
|
|
CE1
|
A:HIS234
|
2.9
|
27.3
|
1.0
|
|
CD2
|
A:HIS234
|
2.9
|
27.7
|
1.0
|
|
CD2
|
A:HIS39
|
2.9
|
30.5
|
1.0
|
|
C1B
|
A:HEC606
|
3.0
|
31.2
|
1.0
|
|
C4A
|
A:HEC606
|
3.0
|
33.0
|
1.0
|
|
C4B
|
A:HEC606
|
3.1
|
34.0
|
1.0
|
|
C1A
|
A:HEC606
|
3.1
|
33.0
|
1.0
|
|
C1D
|
A:HEC606
|
3.1
|
31.4
|
1.0
|
|
C4C
|
A:HEC606
|
3.1
|
32.4
|
1.0
|
|
C4D
|
A:HEC606
|
3.1
|
30.5
|
1.0
|
|
C1C
|
A:HEC606
|
3.1
|
33.1
|
1.0
|
|
CHB
|
A:HEC606
|
3.4
|
29.0
|
1.0
|
|
CHD
|
A:HEC606
|
3.4
|
32.0
|
1.0
|
|
CHA
|
A:HEC606
|
3.4
|
32.9
|
1.0
|
|
CHC
|
A:HEC606
|
3.4
|
34.2
|
1.0
|
|
ND1
|
A:HIS234
|
4.0
|
26.2
|
1.0
|
|
ND1
|
A:HIS39
|
4.0
|
28.6
|
1.0
|
|
CG
|
A:HIS234
|
4.0
|
28.5
|
1.0
|
|
CG
|
A:HIS39
|
4.1
|
30.4
|
1.0
|
|
C2B
|
A:HEC606
|
4.2
|
31.1
|
1.0
|
|
C3A
|
A:HEC606
|
4.3
|
33.4
|
1.0
|
|
C2A
|
A:HEC606
|
4.3
|
32.7
|
1.0
|
|
C3B
|
A:HEC606
|
4.3
|
31.2
|
1.0
|
|
C2D
|
A:HEC606
|
4.3
|
31.3
|
1.0
|
|
C3C
|
A:HEC606
|
4.3
|
32.9
|
1.0
|
|
C2C
|
A:HEC606
|
4.3
|
32.0
|
1.0
|
|
C3D
|
A:HEC606
|
4.3
|
29.5
|
1.0
|
|
Iron binding site 7 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 7 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe607
b:31.0
occ:1.00
|
FE
|
A:HEC607
|
0.0
|
31.0
|
1.0
|
|
NE2
|
A:HIS70
|
1.9
|
34.8
|
1.0
|
|
NE2
|
A:HIS30
|
1.9
|
33.0
|
1.0
|
|
NA
|
A:HEC607
|
2.0
|
28.9
|
1.0
|
|
NB
|
A:HEC607
|
2.0
|
27.1
|
1.0
|
|
ND
|
A:HEC607
|
2.0
|
28.8
|
1.0
|
|
NC
|
A:HEC607
|
2.0
|
28.7
|
1.0
|
|
CD2
|
A:HIS70
|
2.9
|
30.5
|
1.0
|
|
CE1
|
A:HIS30
|
2.9
|
32.4
|
1.0
|
|
CE1
|
A:HIS70
|
2.9
|
29.4
|
1.0
|
|
CD2
|
A:HIS30
|
3.0
|
29.8
|
1.0
|
|
C1B
|
A:HEC607
|
3.0
|
28.4
|
1.0
|
|
C1D
|
A:HEC607
|
3.0
|
29.8
|
1.0
|
|
C4C
|
A:HEC607
|
3.0
|
28.5
|
1.0
|
|
C4A
|
A:HEC607
|
3.0
|
30.1
|
1.0
|
|
C1A
|
A:HEC607
|
3.0
|
29.5
|
1.0
|
|
C4D
|
A:HEC607
|
3.0
|
30.3
|
1.0
|
|
C4B
|
A:HEC607
|
3.1
|
27.4
|
1.0
|
|
C1C
|
A:HEC607
|
3.1
|
27.4
|
1.0
|
|
CHD
|
A:HEC607
|
3.3
|
30.1
|
1.0
|
|
CHB
|
A:HEC607
|
3.4
|
31.1
|
1.0
|
|
CHA
|
A:HEC607
|
3.4
|
30.2
|
1.0
|
|
CHC
|
A:HEC607
|
3.5
|
27.6
|
1.0
|
|
ND1
|
A:HIS70
|
4.0
|
28.7
|
1.0
|
|
ND1
|
A:HIS30
|
4.0
|
34.2
|
1.0
|
|
CG
|
A:HIS70
|
4.0
|
31.5
|
1.0
|
|
CG
|
A:HIS30
|
4.1
|
33.6
|
1.0
|
|
C2B
|
A:HEC607
|
4.2
|
29.8
|
1.0
|
|
C2A
|
A:HEC607
|
4.2
|
28.2
|
1.0
|
|
C3A
|
A:HEC607
|
4.2
|
27.3
|
1.0
|
|
C2D
|
A:HEC607
|
4.3
|
30.1
|
1.0
|
|
C3D
|
A:HEC607
|
4.3
|
30.4
|
1.0
|
|
C3B
|
A:HEC607
|
4.3
|
25.5
|
1.0
|
|
C3C
|
A:HEC607
|
4.3
|
25.9
|
1.0
|
|
C2C
|
A:HEC607
|
4.3
|
26.0
|
1.0
|
|
CMA
|
A:HEC602
|
5.0
|
26.3
|
1.0
|
|
Iron binding site 8 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 8 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe608
b:32.5
occ:1.00
|
FE
|
A:HEC608
|
0.0
|
32.5
|
1.0
|
|
NE2
|
A:HIS18
|
1.9
|
28.5
|
1.0
|
|
NE2
|
A:HIS44
|
1.9
|
28.6
|
1.0
|
|
ND
|
A:HEC608
|
2.0
|
34.3
|
1.0
|
|
NA
|
A:HEC608
|
2.1
|
34.0
|
1.0
|
|
NB
|
A:HEC608
|
2.1
|
31.7
|
1.0
|
|
NC
|
A:HEC608
|
2.1
|
36.6
|
1.0
|
|
CE1
|
A:HIS18
|
2.8
|
28.3
|
1.0
|
|
CE1
|
A:HIS44
|
2.9
|
31.9
|
1.0
|
|
CD2
|
A:HIS44
|
2.9
|
33.3
|
1.0
|
|
CD2
|
A:HIS18
|
2.9
|
31.7
|
1.0
|
|
C1D
|
A:HEC608
|
3.0
|
35.2
|
1.0
|
|
C4D
|
A:HEC608
|
3.0
|
35.9
|
1.0
|
|
C1B
|
A:HEC608
|
3.0
|
32.6
|
1.0
|
|
C4A
|
A:HEC608
|
3.1
|
34.3
|
1.0
|
|
C4C
|
A:HEC608
|
3.1
|
36.2
|
1.0
|
|
C1A
|
A:HEC608
|
3.1
|
33.9
|
1.0
|
|
C4B
|
A:HEC608
|
3.1
|
36.0
|
1.0
|
|
C1C
|
A:HEC608
|
3.1
|
37.5
|
1.0
|
|
CHD
|
A:HEC608
|
3.4
|
34.2
|
1.0
|
|
CHB
|
A:HEC608
|
3.4
|
31.8
|
1.0
|
|
CHA
|
A:HEC608
|
3.4
|
33.3
|
1.0
|
|
CHC
|
A:HEC608
|
3.5
|
34.5
|
1.0
|
|
ND1
|
A:HIS18
|
3.9
|
29.0
|
1.0
|
|
ND1
|
A:HIS44
|
4.0
|
32.5
|
1.0
|
|
CG
|
A:HIS18
|
4.0
|
31.1
|
1.0
|
|
CG
|
A:HIS44
|
4.1
|
34.2
|
1.0
|
|
C2D
|
A:HEC608
|
4.3
|
35.3
|
1.0
|
|
C3D
|
A:HEC608
|
4.3
|
36.5
|
1.0
|
|
C2B
|
A:HEC608
|
4.3
|
33.5
|
1.0
|
|
C3A
|
A:HEC608
|
4.3
|
35.4
|
1.0
|
|
C2A
|
A:HEC608
|
4.3
|
34.8
|
1.0
|
|
C3C
|
A:HEC608
|
4.3
|
34.3
|
1.0
|
|
C2C
|
A:HEC608
|
4.3
|
35.1
|
1.0
|
|
C3B
|
A:HEC608
|
4.3
|
34.5
|
1.0
|
|
CMA
|
A:HEC606
|
4.8
|
34.2
|
1.0
|
|
Iron binding site 9 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 9 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe601
b:30.0
occ:1.00
|
FE
|
B:HEC601
|
0.0
|
30.0
|
1.0
|
|
NZ
|
B:LYS188
|
1.9
|
28.2
|
1.0
|
|
NC
|
B:HEC601
|
2.0
|
28.2
|
1.0
|
|
NA
|
B:HEC601
|
2.0
|
29.9
|
1.0
|
|
NB
|
B:HEC601
|
2.0
|
29.1
|
1.0
|
|
O
|
B:HOH1012
|
2.1
|
30.1
|
1.0
|
|
ND
|
B:HEC601
|
2.1
|
28.2
|
1.0
|
|
CE
|
B:LYS188
|
2.9
|
29.2
|
1.0
|
|
C1C
|
B:HEC601
|
3.0
|
27.9
|
1.0
|
|
C1A
|
B:HEC601
|
3.0
|
29.0
|
1.0
|
|
C4B
|
B:HEC601
|
3.0
|
30.3
|
1.0
|
|
C4A
|
B:HEC601
|
3.0
|
29.0
|
1.0
|
|
C4C
|
B:HEC601
|
3.0
|
29.7
|
1.0
|
|
C1B
|
B:HEC601
|
3.1
|
30.1
|
1.0
|
|
C4D
|
B:HEC601
|
3.1
|
29.2
|
1.0
|
|
C1D
|
B:HEC601
|
3.1
|
31.2
|
1.0
|
|
CHC
|
B:HEC601
|
3.4
|
28.2
|
1.0
|
|
CHA
|
B:HEC601
|
3.4
|
27.2
|
1.0
|
|
CHB
|
B:HEC601
|
3.4
|
27.9
|
1.0
|
|
CHD
|
B:HEC601
|
3.4
|
29.8
|
1.0
|
|
C2C
|
B:HEC601
|
4.2
|
28.6
|
1.0
|
|
C2B
|
B:HEC601
|
4.3
|
29.5
|
1.0
|
|
C2A
|
B:HEC601
|
4.3
|
28.6
|
1.0
|
|
C3A
|
B:HEC601
|
4.3
|
29.4
|
1.0
|
|
NE2
|
B:HIS361
|
4.3
|
31.9
|
1.0
|
|
C3C
|
B:HEC601
|
4.3
|
28.3
|
1.0
|
|
C3B
|
B:HEC601
|
4.3
|
31.1
|
1.0
|
|
C2D
|
B:HEC601
|
4.3
|
28.9
|
1.0
|
|
C3D
|
B:HEC601
|
4.3
|
29.3
|
1.0
|
|
CD
|
B:LYS188
|
4.4
|
29.6
|
1.0
|
|
O
|
B:HOH770
|
4.5
|
31.0
|
1.0
|
|
O
|
B:HOH793
|
4.5
|
37.4
|
1.0
|
|
O
|
B:HOH863
|
4.7
|
36.4
|
1.0
|
|
CMD
|
B:HEC603
|
4.8
|
28.3
|
1.0
|
|
NH2
|
B:ARG131
|
4.8
|
27.4
|
1.0
|
|
CD2
|
B:HIS361
|
5.0
|
28.0
|
1.0
|
|
Iron binding site 10 out
of 16 in 3uu9
Go back to
Iron Binding Sites List in 3uu9
Iron binding site 10 out
of 16 in the Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Structure of the Free Tvnirb Form of Thioalkalivibrio Nitratireducens Cytochrome C Nitrite Reductase within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe602
b:30.8
occ:1.00
|
FE
|
B:HEC602
|
0.0
|
30.8
|
1.0
|
|
NE2
|
B:HIS398
|
1.9
|
33.1
|
1.0
|
|
NE2
|
B:HIS231
|
1.9
|
33.2
|
1.0
|
|
NC
|
B:HEC602
|
2.0
|
27.6
|
1.0
|
|
ND
|
B:HEC602
|
2.0
|
28.7
|
1.0
|
|
NA
|
B:HEC602
|
2.0
|
27.0
|
1.0
|
|
NB
|
B:HEC602
|
2.0
|
28.1
|
1.0
|
|
CD2
|
B:HIS231
|
2.9
|
29.1
|
1.0
|
|
CE1
|
B:HIS398
|
2.9
|
30.9
|
1.0
|
|
CD2
|
B:HIS398
|
2.9
|
27.5
|
1.0
|
|
CE1
|
B:HIS231
|
3.0
|
31.1
|
1.0
|
|
C4D
|
B:HEC602
|
3.0
|
30.5
|
1.0
|
|
C1C
|
B:HEC602
|
3.0
|
28.4
|
1.0
|
|
C1D
|
B:HEC602
|
3.0
|
29.1
|
1.0
|
|
C1A
|
B:HEC602
|
3.0
|
30.9
|
1.0
|
|
C4B
|
B:HEC602
|
3.0
|
29.7
|
1.0
|
|
C4C
|
B:HEC602
|
3.1
|
28.8
|
1.0
|
|
C4A
|
B:HEC602
|
3.1
|
28.7
|
1.0
|
|
C1B
|
B:HEC602
|
3.1
|
30.1
|
1.0
|
|
CHC
|
B:HEC602
|
3.4
|
27.8
|
1.0
|
|
CHA
|
B:HEC602
|
3.4
|
28.3
|
1.0
|
|
CHD
|
B:HEC602
|
3.4
|
27.4
|
1.0
|
|
CHB
|
B:HEC602
|
3.4
|
28.6
|
1.0
|
|
ND1
|
B:HIS398
|
4.0
|
31.4
|
1.0
|
|
CG
|
B:HIS231
|
4.0
|
29.9
|
1.0
|
|
CG
|
B:HIS398
|
4.0
|
31.4
|
1.0
|
|
ND1
|
B:HIS231
|
4.1
|
30.7
|
1.0
|
|
C3D
|
B:HEC602
|
4.2
|
31.0
|
1.0
|
|
C2D
|
B:HEC602
|
4.2
|
27.9
|
1.0
|
|
C2B
|
B:HEC602
|
4.3
|
28.8
|
1.0
|
|
C2C
|
B:HEC602
|
4.3
|
26.3
|
1.0
|
|
C2A
|
B:HEC602
|
4.3
|
28.7
|
1.0
|
|
C3B
|
B:HEC602
|
4.3
|
26.9
|
1.0
|
|
C3A
|
B:HEC602
|
4.3
|
29.6
|
1.0
|
|
C3C
|
B:HEC602
|
4.3
|
28.0
|
1.0
|
|
CMA
|
B:HEC607
|
4.9
|
28.3
|
1.0
|
|
Reference:
A.A.Trofimov,
K.M.Polyakov,
T.V.Tikhonova,
A.V.Tikhonov,
T.N.Safonova,
K.M.Boyko,
P.V.Dorovatovskii,
V.O.Popov.
Covalent Modifications of the Catalytic Tyrosine in Octahaem Cytochrome C Nitrite Reductase and Their Effect on the Enzyme Activity. Acta Crystallogr.,Sect.D V. 68 144 2012.
ISSN: ISSN 0907-4449
PubMed: 22281743
DOI: 10.1107/S0907444911052632
Page generated: Sun Dec 13 15:23:53 2020
|
