Atomistry » Iron » PDB 3v3y-3vks » 3v3z
Atomistry »
  Iron »
    PDB 3v3y-3vks »
      3v3z »

Iron in PDB 3v3z: I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides

Protein crystallography data

The structure of I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides, PDB code: 3v3z was solved by A.G.Gabdulkhakov, T.Y.Fufina, L.G.Vasilieva, V.A.Shuvalov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.90 / 2.90
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 140.130, 140.130, 186.030, 90.00, 90.00, 120.00
R / Rfree (%) 20.4 / 25.1

Other elements in 3v3z:

The structure of I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Potassium (K) 1 atom
Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides (pdb code 3v3z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides, PDB code: 3v3z:

Iron binding site 1 out of 1 in 3v3z

Go back to Iron Binding Sites List in 3v3z
Iron binding site 1 out of 1 in the I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of I(L177)H Mutant Structure of Photosynthetic Reaction Center From Rhodobacter Sphaeroides within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe500

b:55.9
occ:1.00
OE2 M:GLU234 2.0 56.7 1.0
NE2 L:HIS190 2.2 50.9 1.0
NE2 M:HIS266 2.2 39.8 1.0
NE2 L:HIS230 2.3 52.0 1.0
OE1 M:GLU234 2.3 57.8 1.0
NE2 M:HIS219 2.4 58.0 1.0
CD M:GLU234 2.5 57.2 1.0
CE1 L:HIS230 2.9 53.3 1.0
CE1 M:HIS266 3.0 40.9 1.0
CE1 L:HIS190 3.1 50.5 1.0
CE1 M:HIS219 3.2 58.2 1.0
CD2 M:HIS266 3.2 41.7 1.0
CD2 L:HIS190 3.2 51.4 1.0
CD2 M:HIS219 3.4 56.5 1.0
CD2 L:HIS230 3.5 53.9 1.0
CG M:GLU234 4.0 55.5 1.0
ND1 L:HIS230 4.1 53.4 1.0
ND1 M:HIS266 4.2 41.1 1.0
ND1 L:HIS190 4.2 50.8 1.0
CG M:HIS266 4.3 43.2 1.0
CG L:HIS190 4.3 50.6 1.0
ND1 M:HIS219 4.4 56.8 1.0
CG L:HIS230 4.4 53.5 1.0
CG M:HIS219 4.5 54.9 1.0
CG1 M:ILE223 4.6 45.4 1.0
CG2 L:VAL194 4.7 50.6 1.0
CB M:GLU234 4.9 53.6 1.0

Reference:

L.G.Vasilieva, T.Y.Fufina, A.G.Gabdulkhakov, M.M.Leonova, R.A.Khatypov, V.A.Shuvalov. The Site-Directed Mutation I(L177)H in Rhodobacter Sphaeroides Reaction Center Affects Coordination of P(A) and B(B) Bacteriochlorophylls. Biochim.Biophys.Acta V.1817 1407 2012.
ISSN: ISSN 0006-3002
PubMed: 22365928
DOI: 10.1016/J.BBABIO.2012.02.008
Page generated: Sun Dec 13 15:24:04 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy