Iron in PDB 3v5y: Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Protein crystallography data
The structure of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell, PDB code: 3v5y
was solved by
D.R.Tomchick,
R.K.Bruick,
J.W.Thompson,
C.A.Brautigam,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.31 /
2.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
76.257,
54.373,
78.215,
90.00,
90.02,
90.00
|
R / Rfree (%)
|
19.7 /
27
|
Iron Binding Sites:
The binding sites of Iron atom in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
(pdb code 3v5y). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Structure of FBXL5 Hemerythrin Domain, P2(1) Cell, PDB code: 3v5y:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 1 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:31.4
occ:1.00
|
FE1
|
A:FEO201
|
0.0
|
31.4
|
1.0
|
O
|
A:FEO201
|
1.8
|
26.6
|
1.0
|
OE2
|
A:GLU130
|
2.0
|
31.1
|
1.0
|
OE1
|
A:GLU58
|
2.1
|
33.7
|
1.0
|
NE2
|
A:HIS80
|
2.1
|
44.3
|
1.0
|
OE1
|
A:GLU61
|
2.3
|
27.4
|
1.0
|
NE2
|
A:HIS126
|
2.3
|
33.0
|
1.0
|
CE1
|
A:HIS80
|
2.9
|
44.8
|
1.0
|
HE1
|
A:HIS80
|
2.9
|
53.7
|
1.0
|
CD
|
A:GLU130
|
3.0
|
35.6
|
1.0
|
CD
|
A:GLU58
|
3.1
|
36.2
|
1.0
|
CE1
|
A:HIS126
|
3.1
|
37.1
|
1.0
|
FE2
|
A:FEO201
|
3.1
|
27.1
|
1.0
|
HE1
|
A:HIS126
|
3.2
|
44.6
|
1.0
|
CD
|
A:GLU61
|
3.3
|
30.4
|
1.0
|
CD2
|
A:HIS80
|
3.3
|
45.2
|
1.0
|
OE2
|
A:GLU58
|
3.3
|
37.9
|
1.0
|
CD2
|
A:HIS126
|
3.4
|
29.7
|
1.0
|
OE1
|
A:GLU130
|
3.4
|
33.4
|
1.0
|
HD2
|
A:HIS126
|
3.6
|
35.7
|
1.0
|
HD2
|
A:HIS80
|
3.6
|
54.2
|
1.0
|
OE2
|
A:GLU61
|
3.6
|
30.9
|
1.0
|
HA
|
A:GLU58
|
3.9
|
24.2
|
1.0
|
ND1
|
A:HIS80
|
4.1
|
45.2
|
1.0
|
HD2
|
A:HIS57
|
4.3
|
33.0
|
1.0
|
ND1
|
A:HIS126
|
4.3
|
43.2
|
1.0
|
CG
|
A:HIS80
|
4.3
|
45.3
|
1.0
|
CG
|
A:GLU130
|
4.3
|
33.9
|
1.0
|
HB2
|
A:GLU61
|
4.4
|
28.0
|
1.0
|
NE2
|
A:HIS57
|
4.4
|
25.7
|
1.0
|
HG2
|
A:GLU130
|
4.4
|
40.7
|
1.0
|
CG
|
A:HIS126
|
4.4
|
30.9
|
1.0
|
CG
|
A:GLU58
|
4.5
|
33.2
|
1.0
|
CD2
|
A:HIS57
|
4.5
|
27.5
|
1.0
|
HG3
|
A:GLU130
|
4.6
|
40.7
|
1.0
|
HB3
|
A:GLU58
|
4.6
|
36.5
|
1.0
|
CG
|
A:GLU61
|
4.6
|
21.2
|
1.0
|
HE1
|
A:PHE123
|
4.7
|
43.4
|
1.0
|
CA
|
A:GLU58
|
4.8
|
20.2
|
1.0
|
HB3
|
A:GLU61
|
4.8
|
28.0
|
1.0
|
CB
|
A:GLU61
|
4.8
|
23.3
|
1.0
|
CB
|
A:GLU58
|
4.8
|
30.4
|
1.0
|
HG3
|
A:GLU58
|
4.8
|
39.9
|
1.0
|
HG2
|
A:MET127
|
4.9
|
31.9
|
1.0
|
|
Iron binding site 2 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 2 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:27.1
occ:1.00
|
FE2
|
A:FEO201
|
0.0
|
27.1
|
1.0
|
O
|
A:FEO201
|
1.9
|
26.6
|
1.0
|
NE2
|
A:HIS15
|
2.0
|
29.6
|
1.0
|
OE2
|
A:GLU61
|
2.1
|
30.9
|
1.0
|
NE2
|
A:HIS57
|
2.2
|
25.7
|
1.0
|
OE1
|
A:GLU130
|
2.2
|
33.4
|
1.0
|
CD
|
A:GLU61
|
2.8
|
30.4
|
1.0
|
OE1
|
A:GLU61
|
2.9
|
27.4
|
1.0
|
CE1
|
A:HIS15
|
3.0
|
31.4
|
1.0
|
CD2
|
A:HIS15
|
3.1
|
19.3
|
1.0
|
CE1
|
A:HIS57
|
3.1
|
22.4
|
1.0
|
CD
|
A:GLU130
|
3.1
|
35.6
|
1.0
|
FE1
|
A:FEO201
|
3.1
|
31.4
|
1.0
|
HE1
|
A:HIS15
|
3.2
|
37.7
|
1.0
|
HE1
|
A:HIS57
|
3.2
|
26.9
|
1.0
|
OE2
|
A:GLU130
|
3.2
|
31.1
|
1.0
|
CD2
|
A:HIS57
|
3.3
|
27.5
|
1.0
|
HD2
|
A:HIS15
|
3.3
|
23.1
|
1.0
|
HG2
|
A:MET127
|
3.3
|
31.9
|
1.0
|
HD2
|
A:HIS57
|
3.5
|
33.0
|
1.0
|
HD1
|
A:PHE11
|
3.8
|
33.2
|
1.0
|
HA
|
A:MET127
|
4.1
|
43.4
|
1.0
|
ND1
|
A:HIS15
|
4.1
|
28.6
|
1.0
|
CG
|
A:HIS15
|
4.2
|
25.6
|
1.0
|
HD2
|
A:HIS126
|
4.2
|
35.7
|
1.0
|
CG
|
A:GLU61
|
4.2
|
21.2
|
1.0
|
ND1
|
A:HIS57
|
4.2
|
28.5
|
1.0
|
CG
|
A:MET127
|
4.2
|
26.6
|
1.0
|
HE1
|
A:PHE11
|
4.3
|
31.4
|
1.0
|
CG
|
A:HIS57
|
4.3
|
28.4
|
1.0
|
OE2
|
A:GLU58
|
4.4
|
37.9
|
1.0
|
NE2
|
A:HIS126
|
4.4
|
33.0
|
1.0
|
CD1
|
A:PHE11
|
4.4
|
27.6
|
1.0
|
HG3
|
A:GLU61
|
4.5
|
25.4
|
1.0
|
HG2
|
A:GLU61
|
4.5
|
25.4
|
1.0
|
OE1
|
A:GLU58
|
4.5
|
33.7
|
1.0
|
CG
|
A:GLU130
|
4.5
|
33.9
|
1.0
|
HB2
|
A:GLU130
|
4.6
|
47.3
|
1.0
|
O
|
A:HOH321
|
4.6
|
28.2
|
1.0
|
CD2
|
A:HIS126
|
4.6
|
29.7
|
1.0
|
CE1
|
A:PHE11
|
4.7
|
26.2
|
1.0
|
HG3
|
A:MET127
|
4.7
|
31.9
|
1.0
|
CD
|
A:GLU58
|
4.8
|
36.2
|
1.0
|
SD
|
A:MET127
|
4.9
|
29.3
|
1.0
|
HE1
|
A:PHE123
|
4.9
|
43.4
|
1.0
|
CA
|
A:MET127
|
4.9
|
36.1
|
1.0
|
HG3
|
A:GLU130
|
5.0
|
40.7
|
1.0
|
HB3
|
A:MET127
|
5.0
|
37.8
|
1.0
|
CB
|
A:MET127
|
5.0
|
31.5
|
1.0
|
CB
|
A:GLU130
|
5.0
|
39.4
|
1.0
|
|
Iron binding site 3 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 3 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:32.6
occ:1.00
|
FE1
|
B:FEO201
|
0.0
|
32.6
|
1.0
|
O
|
B:FEO201
|
1.8
|
28.8
|
1.0
|
OE2
|
B:GLU130
|
2.0
|
33.8
|
1.0
|
OE1
|
B:GLU58
|
2.1
|
40.9
|
1.0
|
OE1
|
B:GLU61
|
2.2
|
28.3
|
1.0
|
NE2
|
B:HIS80
|
2.3
|
48.5
|
1.0
|
NE2
|
B:HIS126
|
2.3
|
27.7
|
1.0
|
CD
|
B:GLU58
|
3.0
|
40.2
|
1.0
|
CD
|
B:GLU130
|
3.0
|
33.6
|
1.0
|
FE2
|
B:FEO201
|
3.1
|
27.7
|
1.0
|
CE1
|
B:HIS126
|
3.1
|
33.6
|
1.0
|
OE2
|
B:GLU58
|
3.2
|
47.7
|
1.0
|
CE1
|
B:HIS80
|
3.2
|
50.0
|
1.0
|
HE1
|
B:HIS126
|
3.2
|
40.4
|
1.0
|
CD
|
B:GLU61
|
3.3
|
31.9
|
1.0
|
CD2
|
B:HIS80
|
3.3
|
58.8
|
1.0
|
HE1
|
B:HIS80
|
3.3
|
60.0
|
1.0
|
CD2
|
B:HIS126
|
3.4
|
28.3
|
1.0
|
OE1
|
B:GLU130
|
3.4
|
33.4
|
1.0
|
HD2
|
B:HIS80
|
3.5
|
70.6
|
1.0
|
OE2
|
B:GLU61
|
3.6
|
30.9
|
1.0
|
HD2
|
B:HIS126
|
3.6
|
33.9
|
1.0
|
HA
|
B:GLU58
|
3.9
|
32.3
|
1.0
|
HD2
|
B:HIS57
|
4.1
|
29.9
|
1.0
|
NE2
|
B:HIS57
|
4.3
|
25.7
|
1.0
|
ND1
|
B:HIS126
|
4.3
|
37.0
|
1.0
|
CG
|
B:GLU130
|
4.3
|
37.6
|
1.0
|
HB2
|
B:GLU61
|
4.3
|
40.3
|
1.0
|
ND1
|
B:HIS80
|
4.3
|
52.9
|
1.0
|
CG
|
B:GLU58
|
4.4
|
36.0
|
1.0
|
CG
|
B:HIS80
|
4.4
|
58.8
|
1.0
|
CG
|
B:HIS126
|
4.4
|
37.5
|
1.0
|
HG2
|
B:GLU130
|
4.5
|
45.2
|
1.0
|
CD2
|
B:HIS57
|
4.5
|
24.9
|
1.0
|
HB3
|
B:GLU58
|
4.5
|
34.6
|
1.0
|
HG3
|
B:GLU130
|
4.6
|
45.2
|
1.0
|
CG
|
B:GLU61
|
4.6
|
25.5
|
1.0
|
HE1
|
B:PHE123
|
4.6
|
38.2
|
1.0
|
CA
|
B:GLU58
|
4.7
|
26.9
|
1.0
|
HB3
|
B:GLU61
|
4.8
|
40.3
|
1.0
|
CB
|
B:GLU58
|
4.8
|
28.8
|
1.0
|
HG3
|
B:GLU58
|
4.8
|
43.2
|
1.0
|
CB
|
B:GLU61
|
4.8
|
33.6
|
1.0
|
HG2
|
B:MET127
|
4.9
|
40.6
|
1.0
|
HG2
|
B:GLU58
|
5.0
|
43.2
|
1.0
|
|
Iron binding site 4 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 4 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:27.7
occ:1.00
|
FE2
|
B:FEO201
|
0.0
|
27.7
|
1.0
|
O
|
B:FEO201
|
1.8
|
28.8
|
1.0
|
OE2
|
B:GLU61
|
1.9
|
30.9
|
1.0
|
NE2
|
B:HIS15
|
2.1
|
29.7
|
1.0
|
OE1
|
B:GLU130
|
2.2
|
33.4
|
1.0
|
NE2
|
B:HIS57
|
2.3
|
25.7
|
1.0
|
CD
|
B:GLU61
|
2.7
|
31.9
|
1.0
|
OE1
|
B:GLU61
|
2.9
|
28.3
|
1.0
|
CE1
|
B:HIS15
|
3.0
|
25.0
|
1.0
|
CD2
|
B:HIS15
|
3.1
|
25.6
|
1.0
|
CD
|
B:GLU130
|
3.1
|
33.6
|
1.0
|
FE1
|
B:FEO201
|
3.1
|
32.6
|
1.0
|
CE1
|
B:HIS57
|
3.1
|
23.3
|
1.0
|
HE1
|
B:HIS15
|
3.2
|
30.0
|
1.0
|
OE2
|
B:GLU130
|
3.2
|
33.8
|
1.0
|
HG2
|
B:MET127
|
3.2
|
40.6
|
1.0
|
HE1
|
B:HIS57
|
3.3
|
27.9
|
1.0
|
HD2
|
B:HIS15
|
3.3
|
30.8
|
1.0
|
CD2
|
B:HIS57
|
3.3
|
24.9
|
1.0
|
HD2
|
B:HIS57
|
3.5
|
29.9
|
1.0
|
HD1
|
B:PHE11
|
3.8
|
31.1
|
1.0
|
HA
|
B:MET127
|
3.9
|
40.0
|
1.0
|
CG
|
B:GLU61
|
4.1
|
25.5
|
1.0
|
ND1
|
B:HIS15
|
4.2
|
29.6
|
1.0
|
CG
|
B:MET127
|
4.2
|
33.9
|
1.0
|
CG
|
B:HIS15
|
4.2
|
28.1
|
1.0
|
OE2
|
B:GLU58
|
4.3
|
47.7
|
1.0
|
HD2
|
B:HIS126
|
4.3
|
33.9
|
1.0
|
ND1
|
B:HIS57
|
4.3
|
27.5
|
1.0
|
HE1
|
B:PHE11
|
4.3
|
40.5
|
1.0
|
HG3
|
B:GLU61
|
4.4
|
30.6
|
1.0
|
HG2
|
B:GLU61
|
4.4
|
30.6
|
1.0
|
CG
|
B:HIS57
|
4.4
|
26.9
|
1.0
|
CD1
|
B:PHE11
|
4.5
|
25.9
|
1.0
|
NE2
|
B:HIS126
|
4.5
|
27.7
|
1.0
|
OE1
|
B:GLU58
|
4.5
|
40.9
|
1.0
|
HB2
|
B:GLU130
|
4.6
|
47.6
|
1.0
|
CG
|
B:GLU130
|
4.6
|
37.6
|
1.0
|
HG3
|
B:MET127
|
4.7
|
40.6
|
1.0
|
CD2
|
B:HIS126
|
4.7
|
28.3
|
1.0
|
O
|
B:HOH314
|
4.7
|
31.1
|
1.0
|
CE1
|
B:PHE11
|
4.8
|
33.7
|
1.0
|
CD
|
B:GLU58
|
4.8
|
40.2
|
1.0
|
CA
|
B:MET127
|
4.8
|
33.4
|
1.0
|
HE1
|
B:PHE123
|
4.9
|
38.2
|
1.0
|
HB3
|
B:MET127
|
4.9
|
38.9
|
1.0
|
SD
|
B:MET127
|
4.9
|
33.2
|
1.0
|
CB
|
B:MET127
|
4.9
|
32.5
|
1.0
|
HG3
|
B:GLU130
|
4.9
|
45.2
|
1.0
|
CB
|
B:GLU130
|
5.0
|
39.7
|
1.0
|
|
Iron binding site 5 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 5 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:30.1
occ:1.00
|
FE1
|
C:FEO201
|
0.0
|
30.1
|
1.0
|
O
|
C:FEO201
|
1.8
|
23.3
|
1.0
|
OE2
|
C:GLU130
|
2.0
|
32.9
|
1.0
|
OE1
|
C:GLU58
|
2.0
|
29.4
|
1.0
|
NE2
|
C:HIS126
|
2.2
|
31.7
|
1.0
|
OE1
|
C:GLU61
|
2.2
|
25.5
|
1.0
|
NE2
|
C:HIS80
|
2.3
|
45.4
|
1.0
|
CD
|
C:GLU58
|
3.0
|
37.2
|
1.0
|
CD
|
C:GLU130
|
3.0
|
32.3
|
1.0
|
CE1
|
C:HIS126
|
3.1
|
35.1
|
1.0
|
CE1
|
C:HIS80
|
3.1
|
50.0
|
1.0
|
HE1
|
C:HIS80
|
3.1
|
60.0
|
1.0
|
FE2
|
C:FEO201
|
3.1
|
26.5
|
1.0
|
HE1
|
C:HIS126
|
3.2
|
42.1
|
1.0
|
OE2
|
C:GLU58
|
3.2
|
39.0
|
1.0
|
CD
|
C:GLU61
|
3.2
|
33.2
|
1.0
|
CD2
|
C:HIS126
|
3.3
|
32.8
|
1.0
|
OE1
|
C:GLU130
|
3.4
|
29.0
|
1.0
|
CD2
|
C:HIS80
|
3.4
|
53.2
|
1.0
|
HD2
|
C:HIS126
|
3.5
|
39.3
|
1.0
|
OE2
|
C:GLU61
|
3.6
|
34.0
|
1.0
|
HD2
|
C:HIS80
|
3.7
|
63.8
|
1.0
|
HA
|
C:GLU58
|
4.0
|
24.0
|
1.0
|
HD2
|
C:HIS57
|
4.2
|
31.8
|
1.0
|
ND1
|
C:HIS126
|
4.2
|
41.6
|
1.0
|
ND1
|
C:HIS80
|
4.3
|
50.0
|
1.0
|
CG
|
C:GLU130
|
4.3
|
32.4
|
1.0
|
CG
|
C:HIS126
|
4.4
|
35.4
|
1.0
|
HB2
|
C:GLU61
|
4.4
|
30.2
|
1.0
|
NE2
|
C:HIS57
|
4.4
|
21.4
|
1.0
|
CG
|
C:GLU58
|
4.4
|
31.7
|
1.0
|
HG2
|
C:GLU130
|
4.4
|
38.9
|
1.0
|
CG
|
C:HIS80
|
4.5
|
49.8
|
1.0
|
HG3
|
C:GLU130
|
4.5
|
38.9
|
1.0
|
CG
|
C:GLU61
|
4.6
|
28.6
|
1.0
|
CD2
|
C:HIS57
|
4.6
|
26.5
|
1.0
|
HE1
|
C:PHE123
|
4.6
|
43.3
|
1.0
|
HB3
|
C:GLU61
|
4.7
|
30.2
|
1.0
|
HB3
|
C:GLU58
|
4.7
|
39.2
|
1.0
|
CB
|
C:GLU61
|
4.8
|
25.1
|
1.0
|
HG3
|
C:GLU58
|
4.8
|
38.0
|
1.0
|
CA
|
C:GLU58
|
4.8
|
20.0
|
1.0
|
HG2
|
C:MET127
|
4.9
|
31.7
|
1.0
|
CB
|
C:GLU58
|
4.9
|
32.7
|
1.0
|
|
Iron binding site 6 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 6 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:26.5
occ:1.00
|
FE2
|
C:FEO201
|
0.0
|
26.5
|
1.0
|
O
|
C:FEO201
|
1.9
|
23.3
|
1.0
|
OE2
|
C:GLU61
|
2.0
|
34.0
|
1.0
|
NE2
|
C:HIS15
|
2.1
|
29.3
|
1.0
|
OE1
|
C:GLU130
|
2.2
|
29.0
|
1.0
|
NE2
|
C:HIS57
|
2.3
|
21.4
|
1.0
|
CD
|
C:GLU61
|
2.8
|
33.2
|
1.0
|
OE1
|
C:GLU61
|
3.0
|
25.5
|
1.0
|
CD2
|
C:HIS15
|
3.0
|
22.7
|
1.0
|
CE1
|
C:HIS15
|
3.0
|
31.9
|
1.0
|
CD
|
C:GLU130
|
3.1
|
32.3
|
1.0
|
FE1
|
C:FEO201
|
3.1
|
30.1
|
1.0
|
CE1
|
C:HIS57
|
3.2
|
21.9
|
1.0
|
HD2
|
C:HIS15
|
3.2
|
27.2
|
1.0
|
HE1
|
C:HIS15
|
3.2
|
38.3
|
1.0
|
HG2
|
C:MET127
|
3.2
|
31.7
|
1.0
|
OE2
|
C:GLU130
|
3.3
|
32.9
|
1.0
|
HE1
|
C:HIS57
|
3.3
|
26.3
|
1.0
|
CD2
|
C:HIS57
|
3.3
|
26.5
|
1.0
|
HD2
|
C:HIS57
|
3.5
|
31.8
|
1.0
|
HD1
|
C:PHE11
|
3.8
|
34.2
|
1.0
|
HA
|
C:MET127
|
4.0
|
43.5
|
1.0
|
HD2
|
C:HIS126
|
4.1
|
39.3
|
1.0
|
ND1
|
C:HIS15
|
4.1
|
32.0
|
1.0
|
CG
|
C:HIS15
|
4.2
|
26.8
|
1.0
|
CG
|
C:MET127
|
4.2
|
26.4
|
1.0
|
CG
|
C:GLU61
|
4.2
|
28.6
|
1.0
|
ND1
|
C:HIS57
|
4.3
|
28.6
|
1.0
|
OE2
|
C:GLU58
|
4.4
|
39.0
|
1.0
|
HE1
|
C:PHE11
|
4.4
|
38.3
|
1.0
|
CG
|
C:HIS57
|
4.4
|
27.0
|
1.0
|
NE2
|
C:HIS126
|
4.4
|
31.7
|
1.0
|
CD1
|
C:PHE11
|
4.5
|
28.5
|
1.0
|
OE1
|
C:GLU58
|
4.5
|
29.4
|
1.0
|
HG3
|
C:GLU61
|
4.5
|
34.3
|
1.0
|
HG2
|
C:GLU61
|
4.5
|
34.3
|
1.0
|
CG
|
C:GLU130
|
4.5
|
32.4
|
1.0
|
HB2
|
C:GLU130
|
4.6
|
45.1
|
1.0
|
CD2
|
C:HIS126
|
4.6
|
32.8
|
1.0
|
O
|
C:HOH328
|
4.7
|
28.4
|
1.0
|
HG3
|
C:MET127
|
4.7
|
31.7
|
1.0
|
CE1
|
C:PHE11
|
4.8
|
31.9
|
1.0
|
CD
|
C:GLU58
|
4.8
|
37.2
|
1.0
|
CA
|
C:MET127
|
4.9
|
36.2
|
1.0
|
HE1
|
C:PHE123
|
4.9
|
43.3
|
1.0
|
HG3
|
C:GLU130
|
4.9
|
38.9
|
1.0
|
SD
|
C:MET127
|
4.9
|
29.9
|
1.0
|
CB
|
C:MET127
|
5.0
|
30.5
|
1.0
|
HB3
|
C:MET127
|
5.0
|
36.6
|
1.0
|
CB
|
C:GLU130
|
5.0
|
37.6
|
1.0
|
|
Iron binding site 7 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 7 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:30.4
occ:1.00
|
FE1
|
D:FEO201
|
0.0
|
30.4
|
1.0
|
O
|
D:FEO201
|
1.8
|
30.0
|
1.0
|
OE2
|
D:GLU130
|
2.0
|
35.2
|
1.0
|
NE2
|
D:HIS126
|
2.2
|
33.0
|
1.0
|
OE1
|
D:GLU61
|
2.2
|
34.8
|
1.0
|
OE1
|
D:GLU58
|
2.2
|
41.8
|
1.0
|
NE2
|
D:HIS80
|
2.3
|
45.1
|
1.0
|
CD
|
D:GLU58
|
2.9
|
44.0
|
1.0
|
CD
|
D:GLU130
|
3.0
|
34.6
|
1.0
|
OE2
|
D:GLU58
|
3.0
|
46.5
|
1.0
|
FE2
|
D:FEO201
|
3.1
|
28.2
|
1.0
|
CD2
|
D:HIS126
|
3.1
|
34.9
|
1.0
|
CE1
|
D:HIS126
|
3.2
|
35.5
|
1.0
|
CD
|
D:GLU61
|
3.2
|
33.0
|
1.0
|
CD2
|
D:HIS80
|
3.2
|
51.2
|
1.0
|
HD2
|
D:HIS126
|
3.3
|
41.9
|
1.0
|
HD2
|
D:HIS80
|
3.3
|
61.5
|
1.0
|
HE1
|
D:HIS126
|
3.4
|
42.6
|
1.0
|
OE1
|
D:GLU130
|
3.4
|
33.1
|
1.0
|
CE1
|
D:HIS80
|
3.4
|
44.4
|
1.0
|
OE2
|
D:GLU61
|
3.5
|
33.4
|
1.0
|
HE1
|
D:HIS80
|
3.6
|
53.2
|
1.0
|
HA
|
D:GLU58
|
4.0
|
34.8
|
1.0
|
HD2
|
D:HIS57
|
4.1
|
21.1
|
1.0
|
ND1
|
D:HIS126
|
4.3
|
46.1
|
1.0
|
CG
|
D:HIS126
|
4.3
|
42.5
|
1.0
|
CG
|
D:GLU130
|
4.3
|
33.0
|
1.0
|
NE2
|
D:HIS57
|
4.3
|
22.0
|
1.0
|
HB2
|
D:GLU61
|
4.4
|
37.4
|
1.0
|
CG
|
D:GLU58
|
4.4
|
39.2
|
1.0
|
CG
|
D:HIS80
|
4.4
|
52.7
|
1.0
|
HG2
|
D:GLU130
|
4.5
|
39.5
|
1.0
|
ND1
|
D:HIS80
|
4.5
|
51.5
|
1.0
|
CD2
|
D:HIS57
|
4.5
|
17.6
|
1.0
|
HG3
|
D:GLU130
|
4.5
|
39.5
|
1.0
|
CG
|
D:GLU61
|
4.5
|
30.8
|
1.0
|
HB3
|
D:GLU58
|
4.6
|
39.1
|
1.0
|
HE1
|
D:PHE123
|
4.6
|
36.5
|
1.0
|
HB3
|
D:GLU61
|
4.7
|
37.4
|
1.0
|
CB
|
D:GLU61
|
4.8
|
31.2
|
1.0
|
CA
|
D:GLU58
|
4.8
|
29.0
|
1.0
|
CB
|
D:GLU58
|
4.8
|
32.6
|
1.0
|
HG3
|
D:GLU58
|
4.8
|
47.1
|
1.0
|
HG2
|
D:MET127
|
4.8
|
44.0
|
1.0
|
HG2
|
D:GLU58
|
4.9
|
47.1
|
1.0
|
NE2
|
D:HIS15
|
5.0
|
29.3
|
1.0
|
HA
|
D:MET127
|
5.0
|
41.2
|
1.0
|
|
Iron binding site 8 out
of 8 in 3v5y
Go back to
Iron Binding Sites List in 3v5y
Iron binding site 8 out
of 8 in the Structure of FBXL5 Hemerythrin Domain, P2(1) Cell
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Structure of FBXL5 Hemerythrin Domain, P2(1) Cell within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:28.2
occ:1.00
|
FE2
|
D:FEO201
|
0.0
|
28.2
|
1.0
|
O
|
D:FEO201
|
1.9
|
30.0
|
1.0
|
OE2
|
D:GLU61
|
1.9
|
33.4
|
1.0
|
NE2
|
D:HIS15
|
2.0
|
29.3
|
1.0
|
OE1
|
D:GLU130
|
2.3
|
33.1
|
1.0
|
NE2
|
D:HIS57
|
2.3
|
22.0
|
1.0
|
CD
|
D:GLU61
|
2.7
|
33.0
|
1.0
|
OE1
|
D:GLU61
|
2.9
|
34.8
|
1.0
|
CE1
|
D:HIS15
|
2.9
|
23.7
|
1.0
|
CD2
|
D:HIS15
|
3.1
|
23.3
|
1.0
|
HE1
|
D:HIS15
|
3.1
|
28.4
|
1.0
|
HG2
|
D:MET127
|
3.1
|
44.0
|
1.0
|
FE1
|
D:FEO201
|
3.1
|
30.4
|
1.0
|
CD
|
D:GLU130
|
3.1
|
34.6
|
1.0
|
CE1
|
D:HIS57
|
3.2
|
20.3
|
1.0
|
HD2
|
D:HIS15
|
3.3
|
27.9
|
1.0
|
OE2
|
D:GLU130
|
3.3
|
35.2
|
1.0
|
HE1
|
D:HIS57
|
3.3
|
24.4
|
1.0
|
CD2
|
D:HIS57
|
3.4
|
17.6
|
1.0
|
HD2
|
D:HIS57
|
3.6
|
21.1
|
1.0
|
HD1
|
D:PHE11
|
3.8
|
28.2
|
1.0
|
HA
|
D:MET127
|
3.9
|
41.2
|
1.0
|
HD2
|
D:HIS126
|
4.0
|
41.9
|
1.0
|
CG
|
D:MET127
|
4.1
|
36.7
|
1.0
|
ND1
|
D:HIS15
|
4.1
|
33.0
|
1.0
|
CG
|
D:GLU61
|
4.1
|
30.8
|
1.0
|
OE2
|
D:GLU58
|
4.1
|
46.5
|
1.0
|
CG
|
D:HIS15
|
4.2
|
26.0
|
1.0
|
HE1
|
D:PHE11
|
4.2
|
29.0
|
1.0
|
HG3
|
D:GLU61
|
4.3
|
37.0
|
1.0
|
ND1
|
D:HIS57
|
4.4
|
23.3
|
1.0
|
HG2
|
D:GLU61
|
4.4
|
37.0
|
1.0
|
HG3
|
D:MET127
|
4.4
|
44.0
|
1.0
|
CG
|
D:HIS57
|
4.5
|
26.7
|
1.0
|
NE2
|
D:HIS126
|
4.5
|
33.0
|
1.0
|
CD1
|
D:PHE11
|
4.5
|
23.5
|
1.0
|
CD2
|
D:HIS126
|
4.5
|
34.9
|
1.0
|
HB2
|
D:GLU130
|
4.6
|
45.6
|
1.0
|
CG
|
D:GLU130
|
4.6
|
33.0
|
1.0
|
OE1
|
D:GLU58
|
4.7
|
41.8
|
1.0
|
CE1
|
D:PHE11
|
4.7
|
24.2
|
1.0
|
CA
|
D:MET127
|
4.7
|
34.3
|
1.0
|
CD
|
D:GLU58
|
4.7
|
44.0
|
1.0
|
CB
|
D:MET127
|
4.8
|
35.2
|
1.0
|
HB3
|
D:MET127
|
4.8
|
42.2
|
1.0
|
O
|
D:HOH310
|
4.9
|
26.5
|
1.0
|
HE1
|
D:PHE123
|
4.9
|
36.5
|
1.0
|
SD
|
D:MET127
|
4.9
|
29.7
|
1.0
|
HG3
|
D:GLU130
|
5.0
|
39.5
|
1.0
|
CB
|
D:GLU130
|
5.0
|
38.0
|
1.0
|
|
Reference:
J.W.Thompson,
A.A.Salahudeen,
S.Chollangi,
J.C.Ruiz,
C.A.Brautigam,
T.M.Makris,
J.D.Lipscomb,
D.R.Tomchick,
R.K.Bruick.
Structural and Molecular Characterization of Iron-Sensing Hemerythrin-Like Domain Within F-Box and Leucine-Rich Repeat Protein 5 (FBXL5). J.Biol.Chem. V. 287 7357 2012.
ISSN: ISSN 0021-9258
PubMed: 22253436
DOI: 10.1074/JBC.M111.308684
Page generated: Sun Aug 4 21:46:25 2024
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