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Iron in PDB 3vau: Myoglobin Nitrite Structure: Nitriheme Modified

Protein crystallography data

The structure of Myoglobin Nitrite Structure: Nitriheme Modified, PDB code: 3vau was solved by J.Yi, G.B.Richter-Addo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.34 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 35.140, 28.423, 62.867, 90.00, 105.50, 90.00
R / Rfree (%) 17.3 / 23.7

Iron Binding Sites:

The binding sites of Iron atom in the Myoglobin Nitrite Structure: Nitriheme Modified (pdb code 3vau). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Myoglobin Nitrite Structure: Nitriheme Modified, PDB code: 3vau:

Iron binding site 1 out of 1 in 3vau

Go back to Iron Binding Sites List in 3vau
Iron binding site 1 out of 1 in the Myoglobin Nitrite Structure: Nitriheme Modified


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Myoglobin Nitrite Structure: Nitriheme Modified within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:16.6
occ:1.00
FE A:NTE201 0.0 16.6 1.0
O1 A:NO2202 2.0 17.0 1.0
ND A:NTE201 2.0 13.7 1.0
NA A:NTE201 2.0 13.0 1.0
NB A:NTE201 2.0 14.0 1.0
NE2 A:HIS93 2.0 12.8 1.0
N A:NTE201 2.1 13.5 1.0
N A:NO2202 2.7 19.9 1.0
C4A A:NTE201 3.0 12.7 1.0
C1A A:NTE201 3.0 12.9 1.0
C4D A:NTE201 3.0 14.1 1.0
C4C A:NTE201 3.0 13.0 1.0
C1D A:NTE201 3.0 15.6 1.0
C4B A:NTE201 3.0 15.7 1.0
CE1 A:HIS93 3.0 14.2 1.0
C1B A:NTE201 3.0 14.0 1.0
C1C A:NTE201 3.0 11.8 1.0
CD2 A:HIS93 3.1 14.7 1.0
CHB A:NTE201 3.4 13.1 1.0
CHC A:NTE201 3.4 15.9 1.0
CHA A:NTE201 3.5 13.5 1.0
CHD A:NTE201 3.5 13.7 1.0
O2 A:NO2202 3.8 19.7 1.0
ND1 A:HIS93 4.2 14.9 1.0
CG A:HIS93 4.2 15.5 1.0
C3A A:NTE201 4.3 14.3 1.0
C2A A:NTE201 4.3 12.7 1.0
C3B A:NTE201 4.3 16.5 1.0
C2B A:NTE201 4.3 14.6 1.0
C3D A:NTE201 4.3 17.5 1.0
C3C A:NTE201 4.3 13.7 1.0
C2D A:NTE201 4.3 16.0 1.0
C2C A:NTE201 4.3 11.2 1.0
NE2 A:HIS64 4.4 16.6 1.0
CG2 A:VAL68 4.6 15.3 1.0
CE1 A:HIS64 5.0 18.8 1.0

Reference:

J.Yi, G.B.Richter-Addo. Unveiling the Three-Dimensional Structure of the Green Pigment of Nitrite-Cured Meat Chem.Commun.(Camb.) V. 48 4172 2012.
ISSN: ISSN 1359-7345
PubMed: 22430128
DOI: 10.1039/C2CC31065A
Page generated: Sun Dec 13 15:24:15 2020

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