Iron in PDB 3zow: Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
Enzymatic activity of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
All present enzymatic activity of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552:
1.7.2.2;
Protein crystallography data
The structure of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552, PDB code: 3zow
was solved by
H.-P.Hersleth,
M.Can,
J.Krucinska,
G.Zoppellaro,
N.H.Andersen,
S.Karlsen,
J.E.Wedekind,
K.K.Andersson,
K.L.Bren,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
35.22 /
2.35
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.450,
137.930,
204.660,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
20.115 /
25.765
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
18;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
(pdb code 3zow). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 18 binding sites of Iron where determined in the
Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552, PDB code: 3zow:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 1 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1082
b:16.3
occ:1.00
|
FE
|
A:HEC1082
|
0.0
|
16.3
|
1.0
|
|
NA
|
A:HEC1082
|
1.9
|
14.2
|
1.0
|
|
ND
|
A:HEC1082
|
1.9
|
15.4
|
1.0
|
|
NE2
|
A:HIS14
|
2.0
|
20.7
|
1.0
|
|
NC
|
A:HEC1082
|
2.0
|
15.0
|
1.0
|
|
NB
|
A:HEC1082
|
2.1
|
16.2
|
1.0
|
|
SD
|
A:MET59
|
2.4
|
20.2
|
1.0
|
|
C1A
|
A:HEC1082
|
2.9
|
14.3
|
1.0
|
|
C4D
|
A:HEC1082
|
2.9
|
13.7
|
1.0
|
|
C1D
|
A:HEC1082
|
3.0
|
15.2
|
1.0
|
|
CE1
|
A:HIS14
|
3.0
|
20.0
|
1.0
|
|
C4A
|
A:HEC1082
|
3.0
|
15.6
|
1.0
|
|
CD2
|
A:HIS14
|
3.0
|
21.0
|
1.0
|
|
C4C
|
A:HEC1082
|
3.0
|
15.9
|
1.0
|
|
C4B
|
A:HEC1082
|
3.0
|
16.5
|
1.0
|
|
C1B
|
A:HEC1082
|
3.0
|
16.3
|
1.0
|
|
C1C
|
A:HEC1082
|
3.0
|
16.1
|
1.0
|
|
CHA
|
A:HEC1082
|
3.3
|
14.0
|
1.0
|
|
CHD
|
A:HEC1082
|
3.4
|
15.0
|
1.0
|
|
CG
|
A:MET59
|
3.4
|
19.1
|
1.0
|
|
CHB
|
A:HEC1082
|
3.4
|
14.5
|
1.0
|
|
CHC
|
A:HEC1082
|
3.4
|
15.4
|
1.0
|
|
CE
|
A:MET59
|
3.5
|
19.4
|
1.0
|
|
ND1
|
A:HIS14
|
4.1
|
21.1
|
1.0
|
|
CB
|
A:MET59
|
4.1
|
18.4
|
1.0
|
|
C2A
|
A:HEC1082
|
4.1
|
14.2
|
1.0
|
|
CG
|
A:HIS14
|
4.1
|
21.3
|
1.0
|
|
C3A
|
A:HEC1082
|
4.2
|
14.6
|
1.0
|
|
C3D
|
A:HEC1082
|
4.2
|
14.7
|
1.0
|
|
C2D
|
A:HEC1082
|
4.2
|
14.8
|
1.0
|
|
C2C
|
A:HEC1082
|
4.2
|
15.4
|
1.0
|
|
C3C
|
A:HEC1082
|
4.3
|
15.8
|
1.0
|
|
C2B
|
A:HEC1082
|
4.3
|
16.5
|
1.0
|
|
C3B
|
A:HEC1082
|
4.3
|
18.0
|
1.0
|
|
Iron binding site 2 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 2 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1082
b:13.1
occ:1.00
|
FE
|
B:HEC1082
|
0.0
|
13.1
|
1.0
|
|
ND
|
B:HEC1082
|
1.9
|
13.4
|
1.0
|
|
NA
|
B:HEC1082
|
1.9
|
12.6
|
1.0
|
|
NB
|
B:HEC1082
|
2.0
|
11.5
|
1.0
|
|
NC
|
B:HEC1082
|
2.1
|
11.9
|
1.0
|
|
NE2
|
B:HIS14
|
2.1
|
13.8
|
1.0
|
|
SD
|
B:MET59
|
2.3
|
15.2
|
1.0
|
|
C4D
|
B:HEC1082
|
2.9
|
13.8
|
1.0
|
|
C1D
|
B:HEC1082
|
2.9
|
13.1
|
1.0
|
|
C1A
|
B:HEC1082
|
3.0
|
13.0
|
1.0
|
|
C4A
|
B:HEC1082
|
3.0
|
12.6
|
1.0
|
|
C4B
|
B:HEC1082
|
3.0
|
11.6
|
1.0
|
|
C1B
|
B:HEC1082
|
3.0
|
11.5
|
1.0
|
|
C1C
|
B:HEC1082
|
3.1
|
11.2
|
1.0
|
|
C4C
|
B:HEC1082
|
3.1
|
11.4
|
1.0
|
|
CE1
|
B:HIS14
|
3.1
|
13.9
|
1.0
|
|
CD2
|
B:HIS14
|
3.1
|
14.2
|
1.0
|
|
CG
|
B:MET59
|
3.3
|
15.2
|
1.0
|
|
CHB
|
B:HEC1082
|
3.3
|
11.7
|
1.0
|
|
CHA
|
B:HEC1082
|
3.3
|
13.6
|
1.0
|
|
CHC
|
B:HEC1082
|
3.4
|
10.7
|
1.0
|
|
CHD
|
B:HEC1082
|
3.4
|
11.8
|
1.0
|
|
CE
|
B:MET59
|
3.4
|
16.4
|
1.0
|
|
CB
|
B:MET59
|
4.0
|
15.3
|
1.0
|
|
C3A
|
B:HEC1082
|
4.2
|
12.6
|
1.0
|
|
C3D
|
B:HEC1082
|
4.2
|
13.4
|
1.0
|
|
C2D
|
B:HEC1082
|
4.2
|
12.8
|
1.0
|
|
C2A
|
B:HEC1082
|
4.2
|
13.1
|
1.0
|
|
ND1
|
B:HIS14
|
4.2
|
14.3
|
1.0
|
|
C2B
|
B:HEC1082
|
4.2
|
10.4
|
1.0
|
|
C3B
|
B:HEC1082
|
4.2
|
10.4
|
1.0
|
|
CG
|
B:HIS14
|
4.3
|
14.2
|
1.0
|
|
C2C
|
B:HEC1082
|
4.3
|
11.3
|
1.0
|
|
C3C
|
B:HEC1082
|
4.3
|
11.1
|
1.0
|
|
Iron binding site 3 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 3 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1082
b:13.9
occ:1.00
|
FE
|
C:HEC1082
|
0.0
|
13.9
|
1.0
|
|
ND
|
C:HEC1082
|
1.9
|
12.8
|
1.0
|
|
NE2
|
C:HIS14
|
2.0
|
16.3
|
1.0
|
|
NA
|
C:HEC1082
|
2.0
|
13.1
|
1.0
|
|
NB
|
C:HEC1082
|
2.0
|
12.2
|
1.0
|
|
NC
|
C:HEC1082
|
2.1
|
12.9
|
1.0
|
|
SD
|
C:MET59
|
2.3
|
19.0
|
1.0
|
|
C1D
|
C:HEC1082
|
2.8
|
13.5
|
1.0
|
|
C4D
|
C:HEC1082
|
2.9
|
13.6
|
1.0
|
|
CD2
|
C:HIS14
|
2.9
|
16.6
|
1.0
|
|
CE1
|
C:HIS14
|
3.0
|
16.4
|
1.0
|
|
C4B
|
C:HEC1082
|
3.0
|
13.1
|
1.0
|
|
C4C
|
C:HEC1082
|
3.0
|
12.8
|
1.0
|
|
C1B
|
C:HEC1082
|
3.0
|
12.5
|
1.0
|
|
C4A
|
C:HEC1082
|
3.0
|
12.4
|
1.0
|
|
C1A
|
C:HEC1082
|
3.0
|
12.7
|
1.0
|
|
C1C
|
C:HEC1082
|
3.1
|
12.8
|
1.0
|
|
CHD
|
C:HEC1082
|
3.3
|
13.0
|
1.0
|
|
CHA
|
C:HEC1082
|
3.4
|
14.2
|
1.0
|
|
CHB
|
C:HEC1082
|
3.4
|
12.6
|
1.0
|
|
CHC
|
C:HEC1082
|
3.5
|
12.6
|
1.0
|
|
CE
|
C:MET59
|
3.5
|
23.5
|
1.0
|
|
CG
|
C:MET59
|
3.5
|
18.4
|
1.0
|
|
ND1
|
C:HIS14
|
4.0
|
16.8
|
1.0
|
|
CG
|
C:HIS14
|
4.0
|
16.3
|
1.0
|
|
CB
|
C:MET59
|
4.1
|
18.4
|
1.0
|
|
C2D
|
C:HEC1082
|
4.1
|
13.3
|
1.0
|
|
C3D
|
C:HEC1082
|
4.1
|
14.1
|
1.0
|
|
C3A
|
C:HEC1082
|
4.2
|
12.3
|
1.0
|
|
C3B
|
C:HEC1082
|
4.2
|
11.9
|
1.0
|
|
C2B
|
C:HEC1082
|
4.2
|
11.5
|
1.0
|
|
C2A
|
C:HEC1082
|
4.2
|
12.8
|
1.0
|
|
C3C
|
C:HEC1082
|
4.3
|
12.6
|
1.0
|
|
C2C
|
C:HEC1082
|
4.3
|
12.7
|
1.0
|
|
Iron binding site 4 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 4 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1082
b:13.5
occ:1.00
|
FE
|
D:HEC1082
|
0.0
|
13.5
|
1.0
|
|
ND
|
D:HEC1082
|
1.9
|
14.6
|
1.0
|
|
NA
|
D:HEC1082
|
2.0
|
14.2
|
1.0
|
|
NE2
|
D:HIS14
|
2.0
|
13.3
|
1.0
|
|
NC
|
D:HEC1082
|
2.1
|
13.5
|
1.0
|
|
NB
|
D:HEC1082
|
2.1
|
13.4
|
1.0
|
|
SD
|
D:MET59
|
2.2
|
15.6
|
1.0
|
|
C1D
|
D:HEC1082
|
2.9
|
14.3
|
1.0
|
|
C4D
|
D:HEC1082
|
3.0
|
14.2
|
1.0
|
|
CD2
|
D:HIS14
|
3.0
|
13.2
|
1.0
|
|
C4C
|
D:HEC1082
|
3.0
|
13.4
|
1.0
|
|
C4A
|
D:HEC1082
|
3.0
|
14.6
|
1.0
|
|
C1B
|
D:HEC1082
|
3.0
|
14.5
|
1.0
|
|
C1A
|
D:HEC1082
|
3.0
|
14.9
|
1.0
|
|
CE1
|
D:HIS14
|
3.1
|
12.8
|
1.0
|
|
C4B
|
D:HEC1082
|
3.1
|
13.8
|
1.0
|
|
C1C
|
D:HEC1082
|
3.1
|
13.2
|
1.0
|
|
CHD
|
D:HEC1082
|
3.3
|
14.1
|
1.0
|
|
CG
|
D:MET59
|
3.4
|
14.8
|
1.0
|
|
CHB
|
D:HEC1082
|
3.4
|
14.8
|
1.0
|
|
CHA
|
D:HEC1082
|
3.5
|
13.6
|
1.0
|
|
CHC
|
D:HEC1082
|
3.5
|
13.2
|
1.0
|
|
CE
|
D:MET59
|
3.5
|
14.7
|
1.0
|
|
CB
|
D:MET59
|
4.0
|
15.1
|
1.0
|
|
CG
|
D:HIS14
|
4.1
|
12.9
|
1.0
|
|
ND1
|
D:HIS14
|
4.1
|
12.8
|
1.0
|
|
C2D
|
D:HEC1082
|
4.2
|
14.0
|
1.0
|
|
C3D
|
D:HEC1082
|
4.2
|
13.8
|
1.0
|
|
C3C
|
D:HEC1082
|
4.2
|
13.3
|
1.0
|
|
C3A
|
D:HEC1082
|
4.2
|
14.2
|
1.0
|
|
C2A
|
D:HEC1082
|
4.2
|
14.8
|
1.0
|
|
C2C
|
D:HEC1082
|
4.2
|
12.9
|
1.0
|
|
C2B
|
D:HEC1082
|
4.3
|
14.8
|
1.0
|
|
C3B
|
D:HEC1082
|
4.3
|
13.4
|
1.0
|
|
Iron binding site 5 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 5 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1082
b:18.2
occ:1.00
|
FE
|
E:HEC1082
|
0.0
|
18.2
|
1.0
|
|
ND
|
E:HEC1082
|
1.9
|
18.6
|
1.0
|
|
NA
|
E:HEC1082
|
2.0
|
17.1
|
1.0
|
|
NE2
|
E:HIS14
|
2.0
|
19.7
|
1.0
|
|
NC
|
E:HEC1082
|
2.1
|
18.0
|
1.0
|
|
NB
|
E:HEC1082
|
2.1
|
19.1
|
1.0
|
|
SD
|
E:MET59
|
2.4
|
21.1
|
1.0
|
|
CE1
|
E:HIS14
|
2.9
|
20.8
|
1.0
|
|
C4D
|
E:HEC1082
|
2.9
|
18.2
|
1.0
|
|
C1D
|
E:HEC1082
|
2.9
|
18.9
|
1.0
|
|
C1A
|
E:HEC1082
|
3.0
|
17.9
|
1.0
|
|
C4A
|
E:HEC1082
|
3.0
|
17.8
|
1.0
|
|
C4B
|
E:HEC1082
|
3.1
|
18.1
|
1.0
|
|
C1B
|
E:HEC1082
|
3.1
|
17.9
|
1.0
|
|
C4C
|
E:HEC1082
|
3.1
|
17.9
|
1.0
|
|
C1C
|
E:HEC1082
|
3.1
|
19.3
|
1.0
|
|
CD2
|
E:HIS14
|
3.1
|
22.0
|
1.0
|
|
CHA
|
E:HEC1082
|
3.4
|
17.2
|
1.0
|
|
CHB
|
E:HEC1082
|
3.4
|
17.6
|
1.0
|
|
CHD
|
E:HEC1082
|
3.4
|
17.9
|
1.0
|
|
CG
|
E:MET59
|
3.5
|
20.2
|
1.0
|
|
CHC
|
E:HEC1082
|
3.5
|
18.1
|
1.0
|
|
CE
|
E:MET59
|
3.6
|
18.2
|
1.0
|
|
CB
|
E:MET59
|
3.9
|
21.4
|
1.0
|
|
ND1
|
E:HIS14
|
4.0
|
20.9
|
1.0
|
|
CG
|
E:HIS14
|
4.2
|
22.9
|
1.0
|
|
C2D
|
E:HEC1082
|
4.2
|
20.4
|
1.0
|
|
C3A
|
E:HEC1082
|
4.2
|
17.4
|
1.0
|
|
C2A
|
E:HEC1082
|
4.2
|
16.9
|
1.0
|
|
C3D
|
E:HEC1082
|
4.2
|
19.9
|
1.0
|
|
C3C
|
E:HEC1082
|
4.3
|
18.5
|
1.0
|
|
C2C
|
E:HEC1082
|
4.3
|
19.7
|
1.0
|
|
C2B
|
E:HEC1082
|
4.3
|
17.9
|
1.0
|
|
C3B
|
E:HEC1082
|
4.3
|
16.9
|
1.0
|
|
Iron binding site 6 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 6 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe1082
b:23.7
occ:1.00
|
FE
|
F:HEC1082
|
0.0
|
23.7
|
1.0
|
|
ND
|
F:HEC1082
|
1.9
|
27.2
|
1.0
|
|
NA
|
F:HEC1082
|
2.0
|
25.5
|
1.0
|
|
NC
|
F:HEC1082
|
2.1
|
24.5
|
1.0
|
|
NE2
|
F:HIS14
|
2.1
|
32.0
|
1.0
|
|
NB
|
F:HEC1082
|
2.1
|
24.7
|
1.0
|
|
SD
|
F:MET59
|
2.3
|
25.6
|
1.0
|
|
C4D
|
F:HEC1082
|
2.9
|
26.6
|
1.0
|
|
C1D
|
F:HEC1082
|
3.0
|
25.6
|
1.0
|
|
C1A
|
F:HEC1082
|
3.0
|
27.9
|
1.0
|
|
C4B
|
F:HEC1082
|
3.0
|
24.6
|
1.0
|
|
C4A
|
F:HEC1082
|
3.0
|
27.6
|
1.0
|
|
C1B
|
F:HEC1082
|
3.0
|
25.9
|
1.0
|
|
CE1
|
F:HIS14
|
3.1
|
33.0
|
1.0
|
|
C1C
|
F:HEC1082
|
3.1
|
26.6
|
1.0
|
|
CD2
|
F:HIS14
|
3.1
|
31.4
|
1.0
|
|
C4C
|
F:HEC1082
|
3.1
|
24.7
|
1.0
|
|
CHA
|
F:HEC1082
|
3.4
|
27.8
|
1.0
|
|
CHC
|
F:HEC1082
|
3.4
|
25.0
|
1.0
|
|
CHB
|
F:HEC1082
|
3.4
|
25.5
|
1.0
|
|
CG
|
F:MET59
|
3.5
|
25.1
|
1.0
|
|
CHD
|
F:HEC1082
|
3.5
|
24.9
|
1.0
|
|
CE
|
F:MET59
|
3.5
|
24.1
|
1.0
|
|
CB
|
F:MET59
|
4.1
|
25.8
|
1.0
|
|
ND1
|
F:HIS14
|
4.2
|
32.8
|
1.0
|
|
C3D
|
F:HEC1082
|
4.2
|
28.5
|
1.0
|
|
CG
|
F:HIS14
|
4.2
|
34.0
|
1.0
|
|
C2D
|
F:HEC1082
|
4.2
|
28.0
|
1.0
|
|
C2A
|
F:HEC1082
|
4.2
|
28.7
|
1.0
|
|
C3A
|
F:HEC1082
|
4.2
|
28.3
|
1.0
|
|
C2C
|
F:HEC1082
|
4.3
|
25.5
|
1.0
|
|
C2B
|
F:HEC1082
|
4.3
|
25.0
|
1.0
|
|
C3C
|
F:HEC1082
|
4.3
|
24.4
|
1.0
|
|
C3B
|
F:HEC1082
|
4.3
|
25.0
|
1.0
|
|
Iron binding site 7 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 7 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1082
b:18.3
occ:1.00
|
FE
|
G:HEC1082
|
0.0
|
18.3
|
1.0
|
|
ND
|
G:HEC1082
|
1.9
|
19.3
|
1.0
|
|
NA
|
G:HEC1082
|
2.0
|
15.8
|
1.0
|
|
NE2
|
G:HIS14
|
2.0
|
30.5
|
1.0
|
|
NC
|
G:HEC1082
|
2.1
|
19.4
|
1.0
|
|
NB
|
G:HEC1082
|
2.1
|
18.5
|
1.0
|
|
SD
|
G:MET59
|
2.4
|
22.7
|
1.0
|
|
CE1
|
G:HIS14
|
2.8
|
28.6
|
1.0
|
|
C1D
|
G:HEC1082
|
2.9
|
19.6
|
1.0
|
|
C4D
|
G:HEC1082
|
3.0
|
17.5
|
1.0
|
|
C1A
|
G:HEC1082
|
3.0
|
15.8
|
1.0
|
|
C4A
|
G:HEC1082
|
3.0
|
16.8
|
1.0
|
|
C4B
|
G:HEC1082
|
3.0
|
17.3
|
1.0
|
|
C4C
|
G:HEC1082
|
3.0
|
20.6
|
1.0
|
|
C1B
|
G:HEC1082
|
3.0
|
19.0
|
1.0
|
|
CD2
|
G:HIS14
|
3.1
|
30.2
|
1.0
|
|
C1C
|
G:HEC1082
|
3.1
|
18.9
|
1.0
|
|
CE
|
G:MET59
|
3.3
|
25.6
|
1.0
|
|
CG
|
G:MET59
|
3.4
|
23.3
|
1.0
|
|
CHD
|
G:HEC1082
|
3.4
|
19.6
|
1.0
|
|
CHA
|
G:HEC1082
|
3.4
|
16.1
|
1.0
|
|
CHB
|
G:HEC1082
|
3.4
|
16.9
|
1.0
|
|
CHC
|
G:HEC1082
|
3.4
|
18.2
|
1.0
|
|
ND1
|
G:HIS14
|
4.0
|
29.2
|
1.0
|
|
CB
|
G:MET59
|
4.1
|
21.0
|
1.0
|
|
CG
|
G:HIS14
|
4.1
|
31.9
|
1.0
|
|
C2D
|
G:HEC1082
|
4.2
|
18.7
|
1.0
|
|
C3A
|
G:HEC1082
|
4.2
|
14.8
|
1.0
|
|
C2A
|
G:HEC1082
|
4.2
|
14.6
|
1.0
|
|
C3D
|
G:HEC1082
|
4.2
|
18.9
|
1.0
|
|
C3B
|
G:HEC1082
|
4.2
|
17.3
|
1.0
|
|
C2B
|
G:HEC1082
|
4.3
|
17.5
|
1.0
|
|
C3C
|
G:HEC1082
|
4.3
|
21.0
|
1.0
|
|
C2C
|
G:HEC1082
|
4.3
|
20.9
|
1.0
|
|
Iron binding site 8 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 8 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe1082
b:19.8
occ:1.00
|
FE
|
H:HEC1082
|
0.0
|
19.8
|
1.0
|
|
ND
|
H:HEC1082
|
1.9
|
21.5
|
1.0
|
|
NA
|
H:HEC1082
|
2.0
|
21.3
|
1.0
|
|
NE2
|
H:HIS14
|
2.0
|
22.8
|
1.0
|
|
NC
|
H:HEC1082
|
2.1
|
20.7
|
1.0
|
|
NB
|
H:HEC1082
|
2.1
|
23.0
|
1.0
|
|
SD
|
H:MET59
|
2.3
|
24.9
|
1.0
|
|
CE1
|
H:HIS14
|
2.7
|
21.4
|
1.0
|
|
C1D
|
H:HEC1082
|
2.9
|
21.3
|
1.0
|
|
C4D
|
H:HEC1082
|
2.9
|
21.3
|
1.0
|
|
C1A
|
H:HEC1082
|
3.0
|
23.4
|
1.0
|
|
C4A
|
H:HEC1082
|
3.0
|
22.9
|
1.0
|
|
C4C
|
H:HEC1082
|
3.1
|
21.6
|
1.0
|
|
C4B
|
H:HEC1082
|
3.1
|
21.1
|
1.0
|
|
C1B
|
H:HEC1082
|
3.1
|
23.1
|
1.0
|
|
CD2
|
H:HIS14
|
3.1
|
22.7
|
1.0
|
|
C1C
|
H:HEC1082
|
3.1
|
21.2
|
1.0
|
|
CHA
|
H:HEC1082
|
3.4
|
22.7
|
1.0
|
|
CHD
|
H:HEC1082
|
3.4
|
21.8
|
1.0
|
|
CG
|
H:MET59
|
3.4
|
23.8
|
1.0
|
|
CHB
|
H:HEC1082
|
3.4
|
22.9
|
1.0
|
|
CHC
|
H:HEC1082
|
3.5
|
20.1
|
1.0
|
|
ND1
|
H:HIS14
|
3.9
|
22.6
|
1.0
|
|
CE
|
H:MET59
|
4.0
|
27.9
|
1.0
|
|
CB
|
H:MET59
|
4.1
|
23.2
|
1.0
|
|
CG
|
H:HIS14
|
4.1
|
22.7
|
1.0
|
|
C2D
|
H:HEC1082
|
4.2
|
22.8
|
1.0
|
|
C3D
|
H:HEC1082
|
4.2
|
22.5
|
1.0
|
|
C3A
|
H:HEC1082
|
4.2
|
23.1
|
1.0
|
|
C2A
|
H:HEC1082
|
4.2
|
23.8
|
1.0
|
|
C3C
|
H:HEC1082
|
4.3
|
21.1
|
1.0
|
|
C2C
|
H:HEC1082
|
4.3
|
21.6
|
1.0
|
|
C2B
|
H:HEC1082
|
4.3
|
22.3
|
1.0
|
|
C3B
|
H:HEC1082
|
4.3
|
21.5
|
1.0
|
|
Iron binding site 9 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 9 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe1082
b:20.7
occ:1.00
|
FE
|
I:HEC1082
|
0.0
|
20.7
|
1.0
|
|
ND
|
I:HEC1082
|
1.9
|
19.0
|
1.0
|
|
NA
|
I:HEC1082
|
2.0
|
18.9
|
1.0
|
|
NC
|
I:HEC1082
|
2.1
|
17.1
|
1.0
|
|
NB
|
I:HEC1082
|
2.1
|
18.6
|
1.0
|
|
NE2
|
I:HIS14
|
2.1
|
18.6
|
1.0
|
|
SD
|
I:MET59
|
2.2
|
18.1
|
1.0
|
|
CD2
|
I:HIS14
|
2.8
|
20.2
|
1.0
|
|
C1D
|
I:HEC1082
|
2.9
|
19.0
|
1.0
|
|
C4D
|
I:HEC1082
|
3.0
|
19.4
|
1.0
|
|
C4C
|
I:HEC1082
|
3.0
|
17.6
|
1.0
|
|
C4A
|
I:HEC1082
|
3.0
|
17.2
|
1.0
|
|
C1B
|
I:HEC1082
|
3.0
|
17.9
|
1.0
|
|
C1A
|
I:HEC1082
|
3.0
|
19.3
|
1.0
|
|
C4B
|
I:HEC1082
|
3.0
|
19.1
|
1.0
|
|
C1C
|
I:HEC1082
|
3.1
|
18.0
|
1.0
|
|
CE
|
I:MET59
|
3.3
|
17.9
|
1.0
|
|
CE1
|
I:HIS14
|
3.3
|
21.8
|
1.0
|
|
CHD
|
I:HEC1082
|
3.4
|
18.4
|
1.0
|
|
CHB
|
I:HEC1082
|
3.4
|
17.3
|
1.0
|
|
CG
|
I:MET59
|
3.4
|
18.8
|
1.0
|
|
CHA
|
I:HEC1082
|
3.5
|
18.6
|
1.0
|
|
CHC
|
I:HEC1082
|
3.5
|
17.8
|
1.0
|
|
CB
|
I:MET59
|
3.9
|
19.0
|
1.0
|
|
CG
|
I:HIS14
|
4.1
|
20.9
|
1.0
|
|
C2D
|
I:HEC1082
|
4.2
|
20.3
|
1.0
|
|
C3D
|
I:HEC1082
|
4.2
|
19.2
|
1.0
|
|
C2A
|
I:HEC1082
|
4.2
|
17.2
|
1.0
|
|
C3A
|
I:HEC1082
|
4.2
|
17.1
|
1.0
|
|
C3C
|
I:HEC1082
|
4.3
|
17.2
|
1.0
|
|
C2B
|
I:HEC1082
|
4.3
|
18.7
|
1.0
|
|
C3B
|
I:HEC1082
|
4.3
|
19.1
|
1.0
|
|
C2C
|
I:HEC1082
|
4.3
|
17.1
|
1.0
|
|
ND1
|
I:HIS14
|
4.3
|
20.9
|
1.0
|
|
Iron binding site 10 out
of 18 in 3zow
Go back to
Iron Binding Sites List in 3zow
Iron binding site 10 out
of 18 in the Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Wild Type Nitrosomonas Europaea Cytochrome C552 within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe1082
b:30.7
occ:1.00
|
FE
|
J:HEC1082
|
0.0
|
30.7
|
1.0
|
|
ND
|
J:HEC1082
|
1.9
|
31.5
|
1.0
|
|
NA
|
J:HEC1082
|
2.0
|
29.4
|
1.0
|
|
NC
|
J:HEC1082
|
2.0
|
26.7
|
1.0
|
|
NE2
|
J:HIS14
|
2.1
|
25.5
|
1.0
|
|
NB
|
J:HEC1082
|
2.1
|
29.1
|
1.0
|
|
SD
|
J:MET59
|
2.3
|
37.5
|
1.0
|
|
C4D
|
J:HEC1082
|
2.9
|
28.8
|
1.0
|
|
C1D
|
J:HEC1082
|
2.9
|
26.5
|
1.0
|
|
CE1
|
J:HIS14
|
3.0
|
28.3
|
1.0
|
|
C1A
|
J:HEC1082
|
3.0
|
31.7
|
1.0
|
|
C4C
|
J:HEC1082
|
3.0
|
27.5
|
1.0
|
|
C4A
|
J:HEC1082
|
3.0
|
31.2
|
1.0
|
|
C1B
|
J:HEC1082
|
3.0
|
31.2
|
1.0
|
|
C4B
|
J:HEC1082
|
3.1
|
29.5
|
1.0
|
|
C1C
|
J:HEC1082
|
3.1
|
28.9
|
1.0
|
|
CD2
|
J:HIS14
|
3.1
|
27.1
|
1.0
|
|
CHA
|
J:HEC1082
|
3.4
|
30.6
|
1.0
|
|
CHD
|
J:HEC1082
|
3.4
|
26.9
|
1.0
|
|
CE
|
J:MET59
|
3.4
|
36.0
|
1.0
|
|
CHB
|
J:HEC1082
|
3.4
|
30.2
|
1.0
|
|
CHC
|
J:HEC1082
|
3.5
|
29.2
|
1.0
|
|
CG
|
J:MET59
|
3.6
|
37.0
|
1.0
|
|
CB
|
J:MET59
|
4.1
|
35.8
|
1.0
|
|
ND1
|
J:HIS14
|
4.1
|
28.5
|
1.0
|
|
C2D
|
J:HEC1082
|
4.2
|
27.9
|
1.0
|
|
C3D
|
J:HEC1082
|
4.2
|
28.8
|
1.0
|
|
C2A
|
J:HEC1082
|
4.2
|
29.6
|
1.0
|
|
C3A
|
J:HEC1082
|
4.2
|
31.3
|
1.0
|
|
CG
|
J:HIS14
|
4.2
|
28.3
|
1.0
|
|
C3C
|
J:HEC1082
|
4.2
|
26.2
|
1.0
|
|
C2C
|
J:HEC1082
|
4.3
|
26.5
|
1.0
|
|
C2B
|
J:HEC1082
|
4.3
|
30.6
|
1.0
|
|
C3B
|
J:HEC1082
|
4.3
|
29.5
|
1.0
|
|
Reference:
M.Can,
J.Krucinska,
G.Zoppellaro,
N.H.Andersen,
J.E.Wedekind,
H.-P.Hersleth,
K.K.Andersson,
K.L.Bren.
Structural Characterization of Nitrosomonas Europaea Cytochrome C-552 Variants with Marked Differences in Electronic Structure. Chembiochem V. 14 1828 2013.
ISSN: ISSN 1439-4227
PubMed: 23908017
DOI: 10.1002/CBIC.201300118
Page generated: Sun Dec 13 15:27:25 2020
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