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Iron in PDB 3zoy: Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group)

Enzymatic activity of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group)

All present enzymatic activity of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group):
1.7.2.2;

Protein crystallography data

The structure of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group), PDB code: 3zoy was solved by H.-P.Hersleth, M.Can, J.Krucinska, G.Zoppellaro, N.H.Andersen, J.E.Wedekind, K.K.Andersson, K.L.Bren, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 119.22 / 2.30
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 137.668, 137.668, 88.830, 90.00, 90.00, 120.00
R / Rfree (%) 17.474 / 22.57

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group) (pdb code 3zoy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group), PDB code: 3zoy:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 3zoy

Go back to Iron Binding Sites List in 3zoy
Iron binding site 1 out of 4 in the Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1082

b:9.1
occ:1.00
 FE A:HEC1082 0.0 9.1 1.0
NA A:HEC1082 1.8 8.8 1.0
NE2 A:HIS14 1.9 8.7 1.0
NC A:HEC1082 1.9 11.0 1.0
NB A:HEC1082 2.1 9.8 1.0
ND A:HEC1082 2.2 10.5 1.0
SD A:MET59 2.3 9.2 1.0
C4A A:HEC1082 2.8 9.1 1.0
CE1 A:HIS14 2.9 12.1 1.0
C1A A:HEC1082 2.9 11.3 1.0
CD2 A:HIS14 3.0 7.7 1.0
C4C A:HEC1082 3.0 10.0 1.0
C1C A:HEC1082 3.0 15.0 1.0
C1B A:HEC1082 3.0 10.0 1.0
C4B A:HEC1082 3.1 11.4 1.0
C1D A:HEC1082 3.1 9.0 1.0
C4D A:HEC1082 3.1 8.4 1.0
CHB A:HEC1082 3.3 9.8 1.0
CHD A:HEC1082 3.4 9.6 1.0
CHA A:HEC1082 3.4 8.3 1.0
CE A:MET59 3.4 14.3 1.0
CHC A:HEC1082 3.4 11.0 1.0
CG A:MET59 3.4 12.8 1.0
ND1 A:HIS14 4.0 10.9 1.0
C3A A:HEC1082 4.1 9.0 1.0
CG A:HIS14 4.1 10.9 1.0
C2A A:HEC1082 4.1 8.7 1.0
CB A:MET59 4.1 9.4 1.0
C3C A:HEC1082 4.2 10.8 1.0
C2C A:HEC1082 4.2 13.5 1.0
C2B A:HEC1082 4.3 14.2 1.0
C3B A:HEC1082 4.3 11.9 1.0
C2D A:HEC1082 4.4 9.8 1.0
C3D A:HEC1082 4.4 10.6 1.0

Iron binding site 2 out of 4 in 3zoy

Go back to Iron Binding Sites List in 3zoy
Iron binding site 2 out of 4 in the Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1082

b:12.5
occ:1.00
 FE B:HEC1082 0.0 12.5 1.0
NE2 B:HIS14 1.9 7.5 1.0
NA B:HEC1082 2.0 14.7 1.0
NC B:HEC1082 2.0 15.1 1.0
NB B:HEC1082 2.1 13.5 1.0
SD B:MET59 2.2 10.9 1.0
ND B:HEC1082 2.2 12.7 1.0
CE1 B:HIS14 2.9 9.4 1.0
C4A B:HEC1082 3.0 15.1 1.0
CD2 B:HIS14 3.0 9.8 1.0
C1B B:HEC1082 3.0 15.2 1.0
C1C B:HEC1082 3.1 16.5 1.0
C1A B:HEC1082 3.1 15.6 1.0
C4C B:HEC1082 3.1 15.6 1.0
C4D B:HEC1082 3.1 12.8 1.0
C4B B:HEC1082 3.1 14.3 1.0
C1D B:HEC1082 3.2 14.3 1.0
CG B:MET59 3.2 12.8 1.0
CHB B:HEC1082 3.3 14.7 1.0
CE B:MET59 3.4 20.4 1.0
CHC B:HEC1082 3.4 15.2 1.0
CHA B:HEC1082 3.5 11.9 1.0
CHD B:HEC1082 3.5 13.1 1.0
ND1 B:HIS14 4.1 7.6 1.0
CB B:MET59 4.1 14.5 1.0
CG B:HIS14 4.1 10.5 1.0
C3A B:HEC1082 4.2 17.6 1.0
C2A B:HEC1082 4.2 14.8 1.0
C2B B:HEC1082 4.3 18.0 1.0
C3C B:HEC1082 4.3 17.2 1.0
C2C B:HEC1082 4.3 17.6 1.0
C3B B:HEC1082 4.3 17.7 1.0
C3D B:HEC1082 4.4 13.4 1.0
C2D B:HEC1082 4.4 15.8 1.0

Iron binding site 3 out of 4 in 3zoy

Go back to Iron Binding Sites List in 3zoy
Iron binding site 3 out of 4 in the Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe1082

b:9.6
occ:1.00
 FE C:HEC1082 0.0 9.6 1.0
NC C:HEC1082 1.9 10.2 1.0
NA C:HEC1082 1.9 9.3 1.0
NE2 C:HIS14 1.9 7.1 1.0
NB C:HEC1082 2.2 9.9 1.0
ND C:HEC1082 2.3 11.7 1.0
SD C:MET59 2.3 6.3 1.0
CE1 C:HIS14 2.8 12.2 1.0
C4C C:HEC1082 3.0 12.4 1.0
C1A C:HEC1082 3.0 12.3 1.0
C1C C:HEC1082 3.0 13.8 1.0
C4A C:HEC1082 3.0 11.9 1.0
CD2 C:HIS14 3.0 13.0 1.0
C1B C:HEC1082 3.1 10.5 1.0
C4B C:HEC1082 3.2 11.6 1.0
C1D C:HEC1082 3.2 10.1 1.0
C4D C:HEC1082 3.2 9.5 1.0
CG C:MET59 3.3 7.2 1.0
CE C:MET59 3.3 8.9 1.0
CHD C:HEC1082 3.4 10.5 1.0
CHA C:HEC1082 3.4 9.3 1.0
CHB C:HEC1082 3.4 9.5 1.0
CHC C:HEC1082 3.4 11.0 1.0
ND1 C:HIS14 4.0 11.9 1.0
CB C:MET59 4.1 8.2 1.0
CG C:HIS14 4.1 12.9 1.0
C2C C:HEC1082 4.2 12.9 1.0
C3C C:HEC1082 4.2 11.4 1.0
C2A C:HEC1082 4.2 9.4 1.0
C3A C:HEC1082 4.2 10.6 1.0
C2B C:HEC1082 4.4 12.5 1.0
C3B C:HEC1082 4.4 11.9 1.0
C3D C:HEC1082 4.4 10.8 1.0
C2D C:HEC1082 4.4 11.0 1.0

Iron binding site 4 out of 4 in 3zoy

Go back to Iron Binding Sites List in 3zoy
Iron binding site 4 out of 4 in the Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of N64DEL Mutant of Nitrosomonas Europaea Cytochrome C552 (Hexagonal Space Group) within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe1082

b:11.6
occ:1.00
 FE D:HEC1082 0.0 11.6 1.0
NE2 D:HIS14 1.9 9.4 1.0
NC D:HEC1082 1.9 15.2 1.0
NA D:HEC1082 1.9 13.8 1.0
ND D:HEC1082 2.1 14.3 1.0
NB D:HEC1082 2.2 17.8 1.0
SD D:MET59 2.2 12.1 1.0
CE1 D:HIS14 2.8 9.0 1.0
CD2 D:HIS14 3.0 10.4 1.0
C1C D:HEC1082 3.0 17.3 1.0
C4A D:HEC1082 3.0 15.5 1.0
C1A D:HEC1082 3.0 17.5 1.0
C4C D:HEC1082 3.0 19.7 1.0
C4D D:HEC1082 3.0 18.1 1.0
C1D D:HEC1082 3.1 17.7 1.0
C1B D:HEC1082 3.1 18.1 1.0
C4B D:HEC1082 3.1 17.9 1.0
CG D:MET59 3.2 19.0 1.0
CHC D:HEC1082 3.4 19.5 1.0
CHA D:HEC1082 3.4 16.9 1.0
CHB D:HEC1082 3.4 17.6 1.0
CE D:MET59 3.4 15.9 1.0
CHD D:HEC1082 3.4 16.4 1.0
ND1 D:HIS14 3.9 10.8 1.0
CB D:MET59 3.9 17.9 1.0
CG D:HIS14 4.0 14.7 1.0
C3A D:HEC1082 4.2 15.8 1.0
C2C D:HEC1082 4.2 16.3 1.0
C2A D:HEC1082 4.2 15.3 1.0
C3C D:HEC1082 4.3 16.4 1.0
C3D D:HEC1082 4.3 17.8 1.0
C2D D:HEC1082 4.3 16.7 1.0
C2B D:HEC1082 4.4 21.1 1.0
C3B D:HEC1082 4.4 18.8 1.0

Reference:

M.Can, J.Krucinska, G.Zoppellaro, N.H.Andersen, J.E.Wedekind, H.-P.Hersleth, K.K.Andersson, K.L.Bren. Structural Characterization of Nitrosomonas Europaea Cytochrome C-552 Variants with Marked Differences in Electronic Structure. Chembiochem V. 14 1828 2013.
ISSN: ISSN 1439-4227
PubMed: 23908017
DOI: 10.1002/CBIC.201300118
Page generated: Sun Aug 4 23:24:29 2024

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