Iron in PDB 3zpi: Pikc D50N Mutant in P21 Space Group

The structure of Pikc D50N Mutant in P21 Space Group, PDB code: 3zpi was solved by L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	90.80 / 1.63
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	76.085, 59.784, 91.267, 90.00, 95.81, 90.00
R / Rfree (%)	17.39 / 21.874

The structure of Pikc D50N Mutant in P21 Space Group also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Iron atom in the Pikc D50N Mutant in P21 Space Group (pdb code 3zpi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Pikc D50N Mutant in P21 Space Group, PDB code: 3zpi:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Pikc D50N Mutant in P21 Space Group


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Pikc D50N Mutant in P21 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1407 b:11.9 occ:1.00 FE A:HEM1407 0.0 11.9 1.0 NA A:HEM1407 2.0 11.0 1.0 NB A:HEM1407 2.0 11.2 1.0 ND A:HEM1407 2.1 12.4 1.0 NC A:HEM1407 2.1 10.9 1.0 SG A:CYS354 2.3 11.5 1.0 O A:HOH2365 2.3 24.6 1.0 C1A A:HEM1407 3.0 8.6 1.0 C4B A:HEM1407 3.0 9.9 1.0 C1C A:HEM1407 3.1 11.7 1.0 C1B A:HEM1407 3.1 9.9 1.0 C4D A:HEM1407 3.1 9.7 1.0 C1D A:HEM1407 3.1 11.9 1.0 C4A A:HEM1407 3.1 13.0 1.0 C4C A:HEM1407 3.1 11.5 1.0 CHA A:HEM1407 3.4 9.0 1.0 CB A:CYS354 3.4 10.0 1.0 CHC A:HEM1407 3.4 13.6 1.0 CHD A:HEM1407 3.5 11.9 1.0 CHB A:HEM1407 3.5 11.1 1.0 CA A:CYS354 4.1 7.9 1.0 C3B A:HEM1407 4.2 8.6 1.0 C2D A:HEM1407 4.3 11.8 1.0 C3A A:HEM1407 4.3 8.5 1.0 C2B A:HEM1407 4.3 8.1 1.0 C2A A:HEM1407 4.3 8.9 1.0 C3C A:HEM1407 4.3 11.6 1.0 C2C A:HEM1407 4.3 12.4 1.0 C3D A:HEM1407 4.3 9.9 1.0 O A:ALA243 4.4 19.1 1.0 N A:GLY356 4.7 11.2 1.0 OG1 A:THR247 4.7 17.7 1.0 C A:CYS354 4.8 8.6 1.0 CB A:ALA243 4.9 17.9 1.0 N A:ILE355 4.9 8.9 1.0 CA A:GLY356 4.9 10.8 1.0

Iron binding site 2 out of 2 in the Pikc D50N Mutant in P21 Space Group


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Pikc D50N Mutant in P21 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1407 b:13.2 occ:1.00 FE B:HEM1407 0.0 13.2 1.0 NC B:HEM1407 2.0 11.9 1.0 NB B:HEM1407 2.0 16.5 1.0 ND B:HEM1407 2.1 14.6 1.0 NA B:HEM1407 2.1 10.9 1.0 SG B:CYS354 2.3 13.7 1.0 O B:HOH2312 2.4 26.5 1.0 C1C B:HEM1407 3.0 15.3 1.0 C4C B:HEM1407 3.0 14.8 1.0 C1B B:HEM1407 3.1 11.9 1.0 C1D B:HEM1407 3.1 14.3 1.0 C1A B:HEM1407 3.1 9.7 1.0 C4D B:HEM1407 3.1 11.1 1.0 C4A B:HEM1407 3.1 11.5 1.0 C4B B:HEM1407 3.1 15.2 1.0 CB B:CYS354 3.4 9.2 1.0 CHD B:HEM1407 3.4 14.4 1.0 CHB B:HEM1407 3.4 10.9 1.0 CHA B:HEM1407 3.4 12.5 1.0 CHC B:HEM1407 3.5 13.8 1.0 CA B:CYS354 4.1 9.5 1.0 C2C B:HEM1407 4.2 12.4 1.0 C3C B:HEM1407 4.2 15.7 1.0 C3A B:HEM1407 4.2 11.5 1.0 C2A B:HEM1407 4.3 10.8 1.0 C3D B:HEM1407 4.3 12.3 1.0 C2D B:HEM1407 4.3 13.8 1.0 C2B B:HEM1407 4.3 13.7 1.0 C3B B:HEM1407 4.3 15.9 1.0 O B:ALA243 4.5 27.8 1.0 N B:GLY356 4.6 10.9 1.0 OG1 B:THR247 4.8 24.0 1.0 CB B:ALA243 4.8 24.9 1.0 C B:CYS354 4.8 10.8 1.0 CA B:GLY356 4.9 12.3 1.0 N B:ILE355 4.9 9.1 1.0

L.M.Podust, L.M.Podust. N/A N/A.