Atomistry » Iron » PDB 3zjp-4a7m » 3ztm
Atomistry »
  Iron »
    PDB 3zjp-4a7m »
      3ztm »

Iron in PDB 3ztm: Cytochrome C Prime From Alcaligenes Xylosoxidans: As Isolated L16G Variant at 0.9 A Resolution: Unrestraint Refinement

Protein crystallography data

The structure of Cytochrome C Prime From Alcaligenes Xylosoxidans: As Isolated L16G Variant at 0.9 A Resolution: Unrestraint Refinement, PDB code: 3ztm was solved by S.V.Antonyuk, N.Rustage, R.R.Eady, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 0.90
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.377, 53.377, 181.652, 90.00, 90.00, 120.00
R / Rfree (%) 13.3 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome C Prime From Alcaligenes Xylosoxidans: As Isolated L16G Variant at 0.9 A Resolution: Unrestraint Refinement (pdb code 3ztm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Cytochrome C Prime From Alcaligenes Xylosoxidans: As Isolated L16G Variant at 0.9 A Resolution: Unrestraint Refinement, PDB code: 3ztm:

Iron binding site 1 out of 1 in 3ztm

Go back to Iron Binding Sites List in 3ztm
Iron binding site 1 out of 1 in the Cytochrome C Prime From Alcaligenes Xylosoxidans: As Isolated L16G Variant at 0.9 A Resolution: Unrestraint Refinement


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome C Prime From Alcaligenes Xylosoxidans: As Isolated L16G Variant at 0.9 A Resolution: Unrestraint Refinement within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe128

b:5.4
occ:1.00
FE A:HEC128 0.0 5.4 1.0
C A:CMO155 1.8 7.4 0.6
O A:HOH2248 2.0 8.0 0.4
NC A:HEC128 2.0 5.4 1.0
ND A:HEC128 2.0 5.8 1.0
NB A:HEC128 2.0 5.6 1.0
NA A:HEC128 2.0 6.0 1.0
NE2 A:HIS120 2.0 6.2 1.0
O A:CMO155 3.0 7.2 0.6
CE1 A:HIS120 3.0 7.2 1.0
C1B A:HEC128 3.0 5.8 1.0
C1D A:HEC128 3.0 5.6 1.0
C4B A:HEC128 3.0 5.5 1.0
C1C A:HEC128 3.0 5.5 1.0
C4C A:HEC128 3.0 5.3 1.0
C1A A:HEC128 3.0 6.5 1.0
C4A A:HEC128 3.0 6.2 1.0
C4D A:HEC128 3.1 5.8 1.0
CD2 A:HIS120 3.1 6.5 1.0
CHC A:HEC128 3.4 5.7 1.0
CHD A:HEC128 3.4 5.5 1.0
CHB A:HEC128 3.4 6.2 1.0
CHA A:HEC128 3.4 6.6 1.0
ND1 A:HIS120 4.2 8.2 1.0
CG A:HIS120 4.2 7.5 1.0
C3A A:HEC128 4.3 7.4 1.0
C2D A:HEC128 4.3 5.8 1.0
C2A A:HEC128 4.3 7.1 1.0
C3C A:HEC128 4.3 5.6 1.0
C2C A:HEC128 4.3 5.6 1.0
C3B A:HEC128 4.3 6.1 1.0
C2B A:HEC128 4.3 6.0 1.0
C3D A:HEC128 4.3 6.0 1.0
O A:HOH2048 4.4 12.1 0.4
CE A:MET19 4.6 7.5 0.5
NH1 A:ARG124 4.6 9.9 1.0

Reference:

S.V.Antonyuk, N.Rustage, C.A.Petersen, J.L.Arnst, D.J.Heyes, R.Sharma, N.G.Berry, N.S.Scrutton, R.R.Eady, C.R.Andrew, S.S.Hasnain. Carbon Monoxide Poisoning Is Prevented By the Energy Costs of Conformational Changes in Gas- Binding Haemproteins. Proc.Natl.Acad.Sci.Usa V. 108 15780 2011.
ISSN: ISSN 0027-8424
PubMed: 21900609
DOI: 10.1073/PNAS.1109051108
Page generated: Sun Dec 13 15:27:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy