Atomistry » Iron » PDB 4a9v-4b2y » 4a9v
Atomistry »
  Iron »
    PDB 4a9v-4b2y »
      4a9v »

Iron in PDB 4a9v: Pseudomonas Fluorescens Phox

Enzymatic activity of Pseudomonas Fluorescens Phox

All present enzymatic activity of Pseudomonas Fluorescens Phox:
3.1.3.1;

Protein crystallography data

The structure of Pseudomonas Fluorescens Phox, PDB code: 4a9v was solved by S.C.Yong, P.Roversi, J.E.D.Lillington, O.B.Zeldin, E.F.Garman, S.M.Lea, B.C.Berks, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.30 / 1.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.820, 75.980, 114.970, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 11.7

Other elements in 4a9v:

The structure of Pseudomonas Fluorescens Phox also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Chlorine (Cl) 1 atom
Sodium (Na) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Pseudomonas Fluorescens Phox (pdb code 4a9v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Pseudomonas Fluorescens Phox, PDB code: 4a9v:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4a9v

Go back to Iron Binding Sites List in 4a9v
Iron binding site 1 out of 2 in the Pseudomonas Fluorescens Phox


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Pseudomonas Fluorescens Phox within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1594

b:7.7
occ:1.00
FE1 A:FEO1594 0.0 7.7 1.0
O A:FEO1594 2.0 7.9 1.0
OE1 A:GLU194 2.0 7.0 1.0
OE2 A:GLU90 2.1 8.6 1.0
O A:HOH2186 2.2 8.2 1.0
O A:HOH2239 2.3 13.7 1.0
SG A:CYS179 2.5 7.6 1.0
CD A:GLU194 3.0 7.2 1.0
CD A:GLU90 3.1 7.2 1.0
LI A:LI613 3.1 8.3 1.0
CB A:CYS179 3.4 6.1 1.0
OE2 A:GLU194 3.4 7.8 1.0
FE2 A:FEO1594 3.5 7.1 1.0
OE1 A:GLU90 3.5 8.7 1.0
CA A:CA1591 3.7 7.9 1.0
OD2 A:ASP69 3.9 8.7 1.0
O A:HOH2453 3.9 16.7 0.5
O A:HOH2706 3.9 10.5 1.0
O A:HOH2185 4.0 8.2 1.0
CA A:CYS179 4.1 6.0 1.0
O A:HOH2240 4.1 9.1 1.0
OE2 A:GLU273 4.1 6.8 1.0
O A:HOH2241 4.2 11.9 1.0
O A:HOH2453 4.3 16.7 0.5
OE1 A:GLU273 4.3 7.3 1.0
CG A:GLU194 4.3 6.6 1.0
CG A:GLU90 4.4 7.0 1.0
CD A:GLU273 4.4 6.4 1.0
O A:HOH2238 4.5 62.0 1.0
CB A:GLU194 4.5 6.5 1.0
OE2 A:GLU387 4.7 7.2 1.0
ND2 A:ASN195 4.7 18.1 1.0
O A:HOH2704 4.8 47.6 0.5
CG A:ASP69 4.9 7.0 1.0
C A:CYS179 5.0 5.7 1.0

Iron binding site 2 out of 2 in 4a9v

Go back to Iron Binding Sites List in 4a9v
Iron binding site 2 out of 2 in the Pseudomonas Fluorescens Phox


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Pseudomonas Fluorescens Phox within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1594

b:7.1
occ:1.00
FE2 A:FEO1594 0.0 7.1 1.0
O A:FEO1594 1.9 7.9 1.0
OD2 A:ASP292 2.0 7.4 1.0
OE1 A:GLU273 2.0 7.3 1.0
OE2 A:GLU194 2.1 7.8 1.0
OE2 A:GLU387 2.2 7.2 1.0
O A:HOH2453 2.4 16.7 0.5
CD A:GLU273 2.9 6.4 1.0
CG A:ASP292 3.0 7.3 1.0
CD A:GLU194 3.1 7.2 1.0
CD A:GLU387 3.1 7.1 1.0
OE2 A:GLU273 3.2 6.8 1.0
CB A:ASP292 3.4 7.2 1.0
FE1 A:FEO1594 3.5 7.7 1.0
OE1 A:GLU194 3.5 7.0 1.0
O A:HOH2453 3.5 16.7 0.5
CG A:GLU387 3.5 6.5 1.0
CA A:CA1591 3.6 7.9 1.0
O A:HOH2704 3.6 13.0 0.5
O A:HOH2704 3.8 47.6 0.5
O A:HOH2452 4.0 23.1 1.0
O A:HOH2239 4.1 13.7 1.0
SG A:CYS179 4.1 7.6 1.0
OD1 A:ASP292 4.1 9.5 1.0
CA A:CA1592 4.2 7.8 0.9
O A:HOH2706 4.2 10.5 1.0
OE1 A:GLU387 4.3 7.8 1.0
CG A:GLU273 4.3 6.5 1.0
CG A:GLU194 4.4 6.6 1.0
NH2 A:ARG385 4.4 15.1 0.7
CB A:GLU387 4.5 6.2 1.0
O A:HOH2186 4.6 8.2 1.0
CB A:GLU273 4.7 6.4 1.0
OD2 A:ASP479 4.8 7.3 1.0
CA A:ASP292 4.9 7.1 1.0
OD1 A:ASP479 5.0 7.6 1.0

Reference:

S.C.Yong, P.Roversi, J.Lillington, F.Rodriguez, M.Krehenbrink, O.B.Zeldin, E.F.Garman, S.M.Lea, B.C.Berks. A Complex Iron-Calcium Cofactor Catalyzing Phosphotransfer Chemistry Science V. 345 1170 2014.
ISSN: ISSN 0036-8075
PubMed: 25190793
DOI: 10.1126/SCIENCE.1254237
Page generated: Sun Aug 4 23:36:58 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy