Atomistry » Iron » PDB 4a9v-4b2y » 4aan
Atomistry »
  Iron »
    PDB 4a9v-4b2y »
      4aan »

Iron in PDB 4aan: Maca Wild-Type Fully Reduced

Enzymatic activity of Maca Wild-Type Fully Reduced

All present enzymatic activity of Maca Wild-Type Fully Reduced:
1.11.1.5;

Protein crystallography data

The structure of Maca Wild-Type Fully Reduced, PDB code: 4aan was solved by J.Seidel, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.92 / 1.22
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 95.600, 46.970, 77.930, 90.00, 90.94, 90.00
R / Rfree (%) 14.69 / 16.624

Other elements in 4aan:

The structure of Maca Wild-Type Fully Reduced also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Maca Wild-Type Fully Reduced (pdb code 4aan). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Maca Wild-Type Fully Reduced, PDB code: 4aan:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4aan

Go back to Iron Binding Sites List in 4aan
Iron binding site 1 out of 2 in the Maca Wild-Type Fully Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Maca Wild-Type Fully Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe400

b:5.8
occ:1.00
FE A:HEC400 0.0 5.8 1.0
ND A:HEC400 2.0 6.1 1.0
NA A:HEC400 2.0 5.9 1.0
NC A:HEC400 2.0 5.8 1.0
NE2 A:HIS77 2.0 5.8 1.0
NB A:HEC400 2.0 5.4 1.0
O A:HOH2154 2.1 11.8 1.0
C1D A:HEC400 3.0 6.5 1.0
C4D A:HEC400 3.0 6.0 1.0
CE1 A:HIS77 3.0 6.2 1.0
C4A A:HEC400 3.0 6.4 1.0
C1B A:HEC400 3.0 5.4 1.0
CD2 A:HIS77 3.0 5.4 1.0
C1A A:HEC400 3.0 6.7 1.0
C1C A:HEC400 3.0 5.7 1.0
C4C A:HEC400 3.0 5.8 1.0
C4B A:HEC400 3.0 5.3 1.0
CHD A:HEC400 3.3 6.7 1.0
CHA A:HEC400 3.4 6.5 1.0
CHB A:HEC400 3.4 6.2 1.0
CHC A:HEC400 3.4 5.7 1.0
NE2 A:GLN126 4.0 8.0 1.0
O A:HOH2161 4.1 15.8 1.0
ND1 A:HIS77 4.1 6.3 1.0
CG A:HIS77 4.2 5.4 1.0
C3D A:HEC400 4.2 6.5 1.0
C2A A:HEC400 4.2 6.1 1.0
C2D A:HEC400 4.2 7.1 1.0
C2C A:HEC400 4.2 5.8 1.0
C3A A:HEC400 4.2 5.9 1.0
C3C A:HEC400 4.3 6.1 1.0
C3B A:HEC400 4.3 6.2 1.0
C2B A:HEC400 4.3 6.0 1.0
CG A:PRO130 4.5 11.0 1.0
CB A:PRO130 4.6 9.1 1.0

Iron binding site 2 out of 2 in 4aan

Go back to Iron Binding Sites List in 4aan
Iron binding site 2 out of 2 in the Maca Wild-Type Fully Reduced


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Maca Wild-Type Fully Reduced within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:6.7
occ:1.00
FE A:HEC401 0.0 6.7 1.0
ND A:HEC401 2.0 6.3 1.0
NA A:HEC401 2.0 6.4 1.0
NC A:HEC401 2.0 6.6 1.0
NE2 A:HIS223 2.1 6.6 1.0
NB A:HEC401 2.1 7.1 1.0
SD A:MET297 2.3 7.2 0.8
C4A A:HEC401 3.0 6.7 1.0
CE1 A:HIS223 3.0 6.5 1.0
C1D A:HEC401 3.0 7.2 1.0
C4D A:HEC401 3.0 6.9 1.0
C1A A:HEC401 3.0 6.2 1.0
C4C A:HEC401 3.1 7.2 1.0
C4B A:HEC401 3.1 6.8 1.0
C1C A:HEC401 3.1 6.9 1.0
C1B A:HEC401 3.1 7.0 1.0
CD2 A:HIS223 3.1 7.3 1.0
CG A:MET297 3.4 7.2 0.8
CHC A:HEC401 3.4 6.8 1.0
CHA A:HEC401 3.4 6.4 1.0
CHB A:HEC401 3.4 7.0 1.0
CHD A:HEC401 3.4 7.0 1.0
CE A:MET297 3.4 7.6 0.8
CE A:MET297 3.7 7.2 0.2
CG A:MET297 3.9 7.1 0.2
CB A:MET297 4.1 7.9 0.2
ND1 A:HIS223 4.2 7.2 1.0
CG A:HIS223 4.2 7.1 1.0
C3C A:HEC401 4.2 7.7 1.0
C3A A:HEC401 4.2 6.7 1.0
C3D A:HEC401 4.3 6.9 1.0
C2A A:HEC401 4.3 6.3 1.0
C2C A:HEC401 4.3 7.5 1.0
C2D A:HEC401 4.3 7.2 1.0
C3B A:HEC401 4.3 7.5 1.0
C2B A:HEC401 4.3 7.2 1.0
CB A:MET297 4.3 7.8 0.8
SD A:MET297 4.7 7.8 0.2
CG A:GLN301 5.0 8.3 1.0

Reference:

J.Seidel, M.Hoffmann, K.E.Ellis, A.Seidel, T.Spatzal, S.Gerhardt, S.J.Elliott, O.Einsle. Maca Is A Second Cytochrome C Peroxidase of Geobacter Sulfurreducens. Biochemistry V. 51 2747 2012.
ISSN: ISSN 0006-2960
PubMed: 22417533
DOI: 10.1021/BI300249U
Page generated: Sun Dec 13 15:27:54 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy