Iron in PDB 4am5: Bacterioferritin From Blastochloris Viridis

The structure of Bacterioferritin From Blastochloris Viridis, PDB code: 4am5 was solved by W.Y.Wahlgren, H.Omran, D.Von Stetten, A.Royant, S.Van Der Post, G.Katona, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	98.27 / 1.58
Space group	F 2 3
Cell size a, b, c (Å), α, β, γ (°)	170.200, 170.200, 170.200, 90.00, 90.00, 90.00
R / Rfree (%)	15.6 / 17.4

The binding sites of Iron atom in the Bacterioferritin From Blastochloris Viridis (pdb code 4am5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Bacterioferritin From Blastochloris Viridis, PDB code: 4am5:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in the Bacterioferritin From Blastochloris Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Bacterioferritin From Blastochloris Viridis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1160 b:15.0 occ:1.00 FE A:HEM1160 0.0 15.0 1.0 NC A:HEM1160 1.9 13.8 1.0 NB A:HEM1160 2.0 14.7 1.0 NA A:HEM1160 2.0 16.2 1.0 ND A:HEM1160 2.0 16.5 1.0 SD B:MET52 2.3 14.7 1.0 SD A:MET52 2.3 14.8 1.0 C4D A:HEM1160 3.0 19.3 1.0 C4C A:HEM1160 3.0 15.0 1.0 C4B A:HEM1160 3.0 16.1 1.0 C1B A:HEM1160 3.0 16.0 1.0 C1C A:HEM1160 3.0 14.9 1.0 C1A A:HEM1160 3.0 21.1 1.0 C1D A:HEM1160 3.1 17.8 1.0 C4A A:HEM1160 3.1 17.1 1.0 CHA A:HEM1160 3.3 21.7 1.0 CE A:MET52 3.4 14.9 1.0 CE B:MET52 3.4 14.4 1.0 CHB A:HEM1160 3.4 16.6 1.0 CHD A:HEM1160 3.4 15.3 1.0 CHC A:HEM1160 3.4 15.7 1.0 CG A:MET52 3.5 13.8 1.0 CG B:MET52 3.5 13.4 1.0 CB B:MET52 4.2 14.2 1.0 CB A:MET52 4.2 14.4 1.0 C3D A:HEM1160 4.3 21.6 1.0 C3B A:HEM1160 4.3 16.4 1.0 C2A A:HEM1160 4.3 22.0 1.0 C3C A:HEM1160 4.3 17.4 1.0 C2C A:HEM1160 4.3 16.9 1.0 C3A A:HEM1160 4.3 21.2 1.0 C2D A:HEM1160 4.3 20.6 1.0 C2B A:HEM1160 4.3 16.2 1.0

Iron binding site 2 out of 5 in the Bacterioferritin From Blastochloris Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Bacterioferritin From Blastochloris Viridis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1161 b:16.7 occ:1.00 ND1 A:HIS54 2.1 18.5 1.0 OE1 A:GLU51 2.1 17.0 1.0 OE2 A:GLU127 2.1 18.2 1.0 OE2 A:GLU18 2.2 17.6 1.0 OE1 A:GLU18 2.2 16.0 1.0 O A:HOH2027 2.4 21.8 1.0 CD A:GLU18 2.5 18.2 1.0 CD A:GLU51 3.0 19.5 1.0 CE1 A:HIS54 3.0 18.4 1.0 CD A:GLU127 3.1 17.4 1.0 CG A:HIS54 3.2 15.9 1.0 OE2 A:GLU51 3.5 16.8 1.0 OE1 A:GLU127 3.6 21.6 1.0 CB A:HIS54 3.7 14.5 1.0 FE A:FE1162 3.8 16.5 1.0 CG A:GLU18 4.0 14.9 1.0 O A:HOH2024 4.1 24.8 1.0 CG A:GLU51 4.1 15.6 1.0 NE2 A:HIS54 4.2 19.4 1.0 CA A:GLU51 4.2 15.2 1.0 CB A:GLU51 4.2 14.4 1.0 CG A:GLU127 4.3 14.4 1.0 CD2 A:HIS54 4.3 17.9 1.0 OH A:TYR101 4.4 19.0 1.0 CE2 A:TYR101 4.7 15.8 1.0 CE1 A:HIS130 4.8 19.7 1.0 CB A:GLU18 4.9 14.9 1.0 ND1 A:HIS130 4.9 19.4 1.0

Iron binding site 3 out of 5 in the Bacterioferritin From Blastochloris Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Bacterioferritin From Blastochloris Viridis within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1162 b:16.5 occ:1.00 OE1 A:GLU127 1.8 21.6 1.0 OE2 A:GLU51 2.0 16.8 1.0 ND1 A:HIS130 2.0 19.4 1.0 OE2 A:GLU94 2.0 16.6 0.8 OE2 A:GLU94 2.2 14.8 0.2 OE1 A:GLU94 2.5 12.4 0.2 CD A:GLU94 2.6 14.6 0.2 CD A:GLU94 2.7 20.6 0.8 OE1 A:GLU94 2.9 18.4 0.8 CD A:GLU127 2.9 17.4 1.0 CD A:GLU51 2.9 19.5 1.0 CE1 A:HIS130 3.0 19.7 1.0 CG A:HIS130 3.1 18.3 1.0 OE1 A:GLU51 3.2 17.0 1.0 O A:HOH2027 3.3 21.8 1.0 OE2 A:GLU127 3.4 18.2 1.0 CB A:HIS130 3.5 18.6 1.0 FE A:FE1161 3.8 16.7 1.0 CG A:GLU94 4.1 15.0 0.2 NE2 A:HIS130 4.1 24.8 1.0 CG A:GLU94 4.1 18.5 0.8 CG A:GLU127 4.2 14.4 1.0 OH A:TYR25 4.2 19.0 1.0 CE2 A:TYR25 4.2 16.6 1.0 CG A:GLU51 4.2 15.6 1.0 CD2 A:HIS130 4.2 22.0 1.0 CA A:GLU127 4.4 14.7 1.0 CB A:GLU127 4.5 14.4 1.0 CZ A:TYR25 4.7 18.3 1.0 CB A:GLU94 4.8 17.6 0.8

Iron binding site 4 out of 5 in the Bacterioferritin From Blastochloris Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Bacterioferritin From Blastochloris Viridis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1160 b:17.0 occ:1.00 ND1 B:HIS54 2.0 18.0 1.0 OE1 B:GLU51 2.1 16.1 1.0 OE2 B:GLU127 2.1 18.7 1.0 OE2 B:GLU18 2.2 17.9 1.0 OE1 B:GLU18 2.2 15.8 1.0 O B:HOH2028 2.4 21.8 1.0 CD B:GLU18 2.5 16.9 1.0 CD B:GLU51 3.0 20.2 1.0 CE1 B:HIS54 3.0 20.6 1.0 CD B:GLU127 3.1 17.8 1.0 CG B:HIS54 3.2 15.7 1.0 OE2 B:GLU51 3.5 17.2 1.0 OE1 B:GLU127 3.6 21.0 1.0 CB B:HIS54 3.7 14.2 1.0 FE B:FE1161 3.8 16.1 1.0 CG B:GLU18 4.1 14.3 1.0 O B:HOH2025 4.1 24.7 1.0 CG B:GLU51 4.1 16.7 1.0 NE2 B:HIS54 4.1 19.8 1.0 CA B:GLU51 4.2 15.5 1.0 CG B:GLU127 4.3 14.6 1.0 CB B:GLU51 4.3 14.7 1.0 CD2 B:HIS54 4.3 19.2 1.0 OH B:TYR101 4.4 18.4 1.0 CE2 B:TYR101 4.7 15.3 1.0 CE1 B:HIS130 4.8 21.6 1.0 CB B:GLU18 4.9 15.1 1.0 ND1 B:HIS130 4.9 19.4 1.0

Iron binding site 5 out of 5 in the Bacterioferritin From Blastochloris Viridis


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Bacterioferritin From Blastochloris Viridis within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1161 b:16.1 occ:1.00 OE1 B:GLU127 1.8 21.0 1.0 OE2 B:GLU94 2.0 19.2 0.8 ND1 B:HIS130 2.0 19.4 1.0 OE2 B:GLU51 2.0 17.2 1.0 OE2 B:GLU94 2.1 16.3 0.2 OE1 B:GLU94 2.5 13.8 0.2 CD B:GLU94 2.6 15.8 0.2 CD B:GLU94 2.7 19.7 0.8 OE1 B:GLU94 2.8 17.8 0.8 CD B:GLU127 2.9 17.8 1.0 CD B:GLU51 2.9 20.2 1.0 CE1 B:HIS130 2.9 21.6 1.0 CG B:HIS130 3.1 17.6 1.0 OE1 B:GLU51 3.2 16.1 1.0 O B:HOH2028 3.3 21.8 1.0 OE2 B:GLU127 3.4 18.7 1.0 CB B:HIS130 3.6 18.2 1.0 FE B:FE1160 3.8 17.0 1.0 CG B:GLU94 4.1 16.4 0.2 NE2 B:HIS130 4.1 24.8 1.0 CG B:GLU94 4.1 19.0 0.8 CE2 B:TYR25 4.2 16.1 1.0 CG B:GLU127 4.2 14.6 1.0 CD2 B:HIS130 4.2 21.8 1.0 CG B:GLU51 4.2 16.7 1.0 OH B:TYR25 4.2 18.5 1.0 CA B:GLU127 4.4 14.0 1.0 CB B:GLU127 4.5 13.5 1.0 CZ B:TYR25 4.7 18.2 1.0 CB B:GLU94 4.8 17.3 0.8

W.Y.Wahlgren, H.Omran, D.Von Stetten, A.Royant, S.Van Der Post, G.Katona. Structural Characterization of Bacterioferritin From Blastochloris Viridis. Plos One V. 7 46992 2012.
ISSN: ESSN 1932-6203
PubMed: 23056552
DOI: 10.1371/JOURNAL.PONE.0046992