Atomistry » Iron » PDB 4a9v-4b2y » 4ar5
Atomistry »
  Iron »
    PDB 4a9v-4b2y »
      4ar5 »

Iron in PDB 4ar5: X-Ray Crystallographic Structure of the Oxidised Form Perdeuterated Pyrococcus Furiosus Rubredoxin in D2O at 295K (in Quartz Capillary) to 1.00 Angstrom Resolution.

Protein crystallography data

The structure of X-Ray Crystallographic Structure of the Oxidised Form Perdeuterated Pyrococcus Furiosus Rubredoxin in D2O at 295K (in Quartz Capillary) to 1.00 Angstrom Resolution., PDB code: 4ar5 was solved by M.G.Cuypers, S.A.Mason, M.P.Blakeley, E.P.Mitchell, M.Haertlein, V.T.Forsyth, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.540 / 1.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.361, 35.316, 43.993, 90.00, 90.00, 90.00
R / Rfree (%) 10.95 / 11.89

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Crystallographic Structure of the Oxidised Form Perdeuterated Pyrococcus Furiosus Rubredoxin in D2O at 295K (in Quartz Capillary) to 1.00 Angstrom Resolution. (pdb code 4ar5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the X-Ray Crystallographic Structure of the Oxidised Form Perdeuterated Pyrococcus Furiosus Rubredoxin in D2O at 295K (in Quartz Capillary) to 1.00 Angstrom Resolution., PDB code: 4ar5:

Iron binding site 1 out of 1 in 4ar5

Go back to Iron Binding Sites List in 4ar5
Iron binding site 1 out of 1 in the X-Ray Crystallographic Structure of the Oxidised Form Perdeuterated Pyrococcus Furiosus Rubredoxin in D2O at 295K (in Quartz Capillary) to 1.00 Angstrom Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Crystallographic Structure of the Oxidised Form Perdeuterated Pyrococcus Furiosus Rubredoxin in D2O at 295K (in Quartz Capillary) to 1.00 Angstrom Resolution. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1054

b:8.6
occ:1.00
SG A:CYS41 2.3 9.5 1.0
SG A:CYS8 2.3 9.8 1.0
SG A:CYS5 2.3 8.9 1.0
SG A:CYS38 2.3 8.8 1.0
D A:CYS41 3.2 12.3 1.0
DB3 A:CYS8 3.2 13.1 1.0
DB3 A:CYS5 3.2 10.3 1.0
DB3 A:CYS38 3.2 10.1 1.0
CB A:CYS38 3.2 8.4 1.0
CB A:CYS5 3.2 8.6 1.0
DB3 A:CYS41 3.2 12.0 1.0
DB2 A:CYS38 3.3 10.1 1.0
D A:CYS8 3.3 11.9 1.0
DB2 A:CYS5 3.3 10.3 1.0
CB A:CYS8 3.3 10.9 1.0
CB A:CYS41 3.4 10.0 1.0
DB A:ILE7 3.6 17.4 1.0
DB3 A:TYR10 3.6 11.1 1.0
DB A:ILE40 3.7 14.4 1.0
N A:CYS41 3.8 10.3 1.0
DB1 A:ALA43 3.8 13.1 1.0
N A:CYS8 3.9 9.9 1.0
D A:ALA43 4.0 11.0 1.0
DB2 A:CYS8 4.1 13.1 1.0
CA A:CYS41 4.1 10.0 1.0
DB2 A:CYS41 4.1 12.0 1.0
CA A:CYS8 4.1 10.2 1.0
D A:TYR10 4.2 10.5 1.0
DB3 A:ALA43 4.2 13.1 1.0
DB2 A:TYR10 4.4 11.1 1.0
CB A:TYR10 4.4 9.3 1.0
D A:ILE40 4.5 12.2 1.0
CB A:ALA43 4.5 10.9 1.0
CB A:ILE7 4.5 14.5 1.0
D A:GLY42 4.6 11.4 1.0
D A:ILE7 4.6 12.4 1.0
D A:GLY9 4.6 11.0 1.0
CB A:ILE40 4.6 12.0 1.0
DZ A:PHE48 4.6 13.0 1.0
CA A:CYS5 4.6 7.8 1.0
CA A:CYS38 4.6 8.5 1.0
C A:CYS41 4.8 9.6 1.0
C A:CYS8 4.8 9.4 1.0
N A:ALA43 4.8 9.1 1.0
C A:ILE7 4.9 10.9 1.0
N A:GLY42 4.9 9.5 1.0
C A:ILE40 4.9 11.0 1.0
N A:GLY9 4.9 9.2 1.0
DG23 A:ILE40 4.9 18.6 1.0
DG23 A:ILE7 4.9 21.4 1.0
N A:TYR10 4.9 8.7 1.0
DA A:CYS38 4.9 10.2 1.0
DA A:CYS5 5.0 9.3 1.0
DA A:CYS41 5.0 12.0 1.0
DA A:CYS8 5.0 12.2 1.0
DD2 A:TYR10 5.0 11.5 1.0

Reference:

M.G.Cuypers, S.A.Mason, M.P.Blakeley, E.P.Mitchell, M.Haertlein, V.T.Forsyth. Near-Atomic Resolution Neutron Crystallography on Perdeuterated Pyrococcus Furiosus Rubredoxin: Implication of Hydronium Ions and Protonation Equilibria and Hydronium Ions in Redox Changes Angew.Chem.Int.Ed.Engl. V. 52 1022 2013.
ISSN: ISSN 1433-7851
PubMed: 23225503
DOI: 10.1002/ANIE.201207071
Page generated: Sun Dec 13 15:28:10 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy