Iron in PDB 4c9o: Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1

The structure of Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1, PDB code: 4c9o was solved by D.Batabyal, T.L Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.802 / 1.98
Space group	P 64 2 2
Cell size a, b, c (Å), α, β, γ (°)	152.377, 152.377, 197.426, 90.00, 90.00, 120.00
R / Rfree (%)	14.71 / 18.17

The binding sites of Iron atom in the Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1 (pdb code 4c9o). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1, PDB code: 4c9o:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe422 b:11.6 occ:1.00 FE A:HEM422 0.0 11.6 1.0 C A:CYN424 1.9 17.0 1.0 NB A:HEM422 2.0 9.0 1.0 NA A:HEM422 2.0 12.0 1.0 ND A:HEM422 2.0 11.9 1.0 NC A:HEM422 2.0 11.8 1.0 SG A:CYS365 2.3 11.5 1.0 N A:CYN424 2.9 15.3 1.0 C4B A:HEM422 3.0 7.2 1.0 C1B A:HEM422 3.0 7.0 1.0 C1C A:HEM422 3.0 12.6 1.0 C1D A:HEM422 3.0 10.6 1.0 C4A A:HEM422 3.1 12.2 1.0 C4D A:HEM422 3.1 10.6 1.0 C1A A:HEM422 3.1 9.9 1.0 C4C A:HEM422 3.1 12.1 1.0 CHC A:HEM422 3.4 16.1 1.0 HB2 A:CYS365 3.4 14.0 1.0 CHB A:HEM422 3.4 10.4 1.0 CHD A:HEM422 3.4 13.1 1.0 CHA A:HEM422 3.4 12.9 1.0 CB A:CYS365 3.5 11.7 1.0 H51 A:CAM423 3.6 29.3 1.0 H A:GLY367 3.8 14.1 1.0 HA A:CYS365 3.8 12.8 1.0 H81 A:CAM423 4.0 34.9 1.0 CA A:CYS365 4.2 10.7 1.0 C3B A:HEM422 4.2 10.1 1.0 C2B A:HEM422 4.2 8.6 1.0 C2C A:HEM422 4.3 14.3 1.0 HB3 A:CYS365 4.3 14.0 1.0 C3A A:HEM422 4.3 9.4 1.0 C2A A:HEM422 4.3 8.9 1.0 C3C A:HEM422 4.3 15.0 1.0 C3D A:HEM422 4.3 10.9 1.0 C2D A:HEM422 4.3 11.8 1.0 HHC A:HEM422 4.4 19.3 1.0 HHB A:HEM422 4.4 12.4 1.0 HHA A:HEM422 4.4 15.5 1.0 HHD A:HEM422 4.4 15.7 1.0 HA3 A:GLY367 4.4 14.6 1.0 H A:ALA366 4.6 15.4 1.0 HD1 A:PHE358 4.6 13.6 1.0 N A:GLY367 4.6 11.7 1.0 HG22 A:THR260 4.6 18.0 1.0 C5 A:CAM423 4.6 24.4 1.0 H62 A:CAM423 4.6 33.8 1.0 HA3 A:GLY256 4.8 18.7 1.0 C A:CYS365 4.8 10.7 1.0 N A:ALA366 4.9 12.8 1.0 CA A:GLY367 5.0 12.2 1.0 HB A:THR260 5.0 20.6 1.0

Iron binding site 2 out of 2 in the Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Cyanide and Camphor Bound D259N Mutant of CYP101D1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe422 b:12.3 occ:1.00 FE B:HEM422 0.0 12.3 1.0 C B:CYN424 2.0 25.1 1.0 NB B:HEM422 2.0 8.3 1.0 ND B:HEM422 2.0 11.7 1.0 NC B:HEM422 2.1 14.4 1.0 NA B:HEM422 2.1 13.3 1.0 SG B:CYS365 2.3 12.9 1.0 N B:CYN424 3.0 18.2 1.0 C1B B:HEM422 3.0 9.2 1.0 C1D B:HEM422 3.0 14.3 1.0 C4B B:HEM422 3.0 11.5 1.0 C4A B:HEM422 3.0 12.3 1.0 C4C B:HEM422 3.1 11.9 1.0 C1C B:HEM422 3.1 15.9 1.0 C4D B:HEM422 3.1 12.3 1.0 C1A B:HEM422 3.1 11.5 1.0 HB2 B:CYS365 3.3 9.4 1.0 CHB B:HEM422 3.4 12.9 1.0 CHD B:HEM422 3.4 11.4 1.0 CHC B:HEM422 3.4 16.9 1.0 CB B:CYS365 3.4 7.8 1.0 CHA B:HEM422 3.5 10.1 1.0 H52 B:CAM423 3.6 28.5 1.0 H B:GLY367 3.8 16.7 1.0 HA B:CYS365 3.8 13.8 1.0 CA B:CYS365 4.2 11.5 1.0 HB3 B:CYS365 4.2 9.4 1.0 C2B B:HEM422 4.2 10.4 1.0 C3B B:HEM422 4.2 9.2 1.0 C2D B:HEM422 4.3 12.0 1.0 C3C B:HEM422 4.3 14.5 1.0 HA3 B:GLY367 4.3 15.1 1.0 C2C B:HEM422 4.3 13.3 1.0 C3A B:HEM422 4.3 8.5 1.0 C3D B:HEM422 4.3 12.1 1.0 C2A B:HEM422 4.3 10.8 1.0 HHB B:HEM422 4.3 15.5 1.0 HHC B:HEM422 4.4 20.3 1.0 HHD B:HEM422 4.4 13.7 1.0 H92 B:CAM423 4.4 29.2 1.0 HHA B:HEM422 4.5 12.1 1.0 H B:ALA366 4.5 15.1 1.0 N B:GLY367 4.5 13.9 1.0 HD1 B:PHE358 4.6 10.7 1.0 HG22 B:THR260 4.6 19.4 1.0 C5 B:CAM423 4.7 23.7 1.0 C B:CYS365 4.8 14.3 1.0 N B:ALA366 4.8 12.6 1.0 HA3 B:GLY256 4.8 27.9 1.0 H61 B:CAM423 4.9 33.4 1.0 CA B:GLY367 4.9 12.6 1.0 HB B:THR260 4.9 20.6 1.0 H51 B:CAM423 5.0 28.5 1.0

D.Batabyal, T.L.Poulos. Crystal Structures and Functional Characterization of Wild- Type CYP101D1 and Its Active Site Mutants. Biochemistry V. 52 8898 2013.
ISSN: ISSN 0006-2960
PubMed: 24261604
DOI: 10.1021/BI401330C