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Iron in PDB 4cjo: Spectroscopically-Validated Structure of Ferrous Cytochrome C Prime From Alcaligenes Xylosoxidans, Reduced at 180K Using X-Rays

Protein crystallography data

The structure of Spectroscopically-Validated Structure of Ferrous Cytochrome C Prime From Alcaligenes Xylosoxidans, Reduced at 180K Using X-Rays, PDB code: 4cjo was solved by D.Kekilli, F.Dworkowski, S.Antonyuk, M.A.Hough, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.48 / 1.55
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 53.675, 53.675, 181.812, 90.00, 90.00, 120.00
R / Rfree (%) 23.12 / 25.119

Iron Binding Sites:

The binding sites of Iron atom in the Spectroscopically-Validated Structure of Ferrous Cytochrome C Prime From Alcaligenes Xylosoxidans, Reduced at 180K Using X-Rays (pdb code 4cjo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Spectroscopically-Validated Structure of Ferrous Cytochrome C Prime From Alcaligenes Xylosoxidans, Reduced at 180K Using X-Rays, PDB code: 4cjo:

Iron binding site 1 out of 1 in 4cjo

Go back to Iron Binding Sites List in 4cjo
Iron binding site 1 out of 1 in the Spectroscopically-Validated Structure of Ferrous Cytochrome C Prime From Alcaligenes Xylosoxidans, Reduced at 180K Using X-Rays


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Spectroscopically-Validated Structure of Ferrous Cytochrome C Prime From Alcaligenes Xylosoxidans, Reduced at 180K Using X-Rays within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe128

b:14.5
occ:1.00
FE A:HEC128 0.0 14.5 1.0
NC A:HEC128 2.0 15.1 1.0
NA A:HEC128 2.0 14.3 1.0
NE2 A:HIS120 2.0 15.0 1.0
ND A:HEC128 2.0 14.0 1.0
NB A:HEC128 2.1 15.3 1.0
CD2 A:HIS120 3.0 16.1 1.0
C1D A:HEC128 3.0 13.6 1.0
C4C A:HEC128 3.0 14.2 1.0
C1C A:HEC128 3.0 14.6 1.0
CE1 A:HIS120 3.1 17.3 1.0
C1A A:HEC128 3.1 14.4 1.0
C4A A:HEC128 3.1 14.4 1.0
C4D A:HEC128 3.1 14.0 1.0
C4B A:HEC128 3.1 15.4 1.0
C1B A:HEC128 3.1 14.2 1.0
CHD A:HEC128 3.4 14.9 1.0
CHA A:HEC128 3.4 13.5 1.0
CHB A:HEC128 3.4 14.4 1.0
CHC A:HEC128 3.4 14.2 1.0
CD2 A:LEU16 3.8 16.1 1.0
ND1 A:HIS120 4.2 17.3 1.0
CG A:HIS120 4.2 17.7 1.0
NH1 A:ARG124 4.2 26.7 0.7
C2C A:HEC128 4.2 15.3 1.0
C2D A:HEC128 4.3 13.6 1.0
C3D A:HEC128 4.3 13.8 1.0
C2B A:HEC128 4.3 15.9 1.0
C3A A:HEC128 4.3 14.9 1.0
C3C A:HEC128 4.3 14.7 1.0
C3B A:HEC128 4.3 16.3 1.0
C2A A:HEC128 4.3 15.0 1.0
CD1 A:LEU16 4.5 15.9 1.0
NH1 A:ARG124 4.5 20.2 0.3
CG A:LEU16 4.6 14.6 1.0
CB A:LEU16 4.8 13.7 1.0

Reference:

D.Kekilli, F.S.Dworkowski, G.Pompidor, M.R.Fuchs, C.R.Andrew, S.Antonyuk, R.W.Strange, R.R.Eady, S.S.Hasnain, M.A.Hough. Fingerprinting Redox and Ligand States in Haemprotein Crystal Structures Using Resonance Raman Spectroscopy. Acta Crystallogr.,Sect.D V. 70 1289 2014.
ISSN: ISSN 0907-4449
PubMed: 24816098
DOI: 10.1107/S1399004714004039
Page generated: Sun Dec 13 15:30:16 2020

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