Iron in PDB 4crm: Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1

The structure of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Iron atom in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 (pdb code 4crm). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1, PDB code: 4crm:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1610 b:29.9 occ:1.00 FE1 P:SF41610 0.0 29.9 1.0 S2 P:SF41610 2.3 25.1 1.0 S4 P:SF41610 2.3 27.7 1.0 S3 P:SF41610 2.3 27.7 1.0 FE3 P:SF41610 2.7 29.9 1.0 FE2 P:SF41610 2.7 30.5 1.0 FE4 P:SF41610 2.8 30.0 1.0 SG P:CYS29 3.1 0.0 1.0 SG P:CYS61 3.6 0.0 1.0 SG P:CYS38 3.6 0.0 1.0 CB P:CYS61 3.8 0.0 1.0 S1 P:SF41610 3.9 29.6 1.0 CB P:CYS29 3.9 0.0 1.0 SG P:CYS55 4.4 0.0 1.0 SG P:CYS58 4.5 0.0 1.0 CA P:CYS29 4.7 0.0 1.0 CD1 P:ILE72 4.7 0.0 1.0 CB P:CYS38 4.8 0.0 1.0 N P:CYS61 5.0 0.0 1.0 CA P:CYS61 5.0 0.0 1.0

Iron binding site 2 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1610 b:30.5 occ:1.00 FE2 P:SF41610 0.0 30.5 1.0 S4 P:SF41610 2.2 27.7 1.0 S3 P:SF41610 2.2 27.7 1.0 S1 P:SF41610 2.3 29.6 1.0 SG P:CYS55 2.6 0.0 1.0 FE4 P:SF41610 2.7 30.0 1.0 FE1 P:SF41610 2.7 29.9 1.0 CD1 P:ILE72 2.7 0.0 1.0 FE3 P:SF41610 2.8 29.9 1.0 CG1 P:ILE72 3.6 0.0 1.0 SG P:CYS61 3.6 0.0 1.0 S2 P:SF41610 3.8 25.1 1.0 CB P:CYS55 3.8 0.0 1.0 CG2 P:ILE50 4.0 0.0 1.0 SG P:CYS38 4.0 0.0 1.0 CB P:ILE72 4.8 0.0 1.0 CG1 P:ILE50 4.8 0.0 1.0 CA P:CYS55 4.9 0.0 1.0 CB P:CYS61 4.9 0.0 1.0 CG2 P:ILE72 4.9 0.0 1.0

Iron binding site 3 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1610 b:29.9 occ:1.00 FE3 P:SF41610 0.0 29.9 1.0 SG P:CYS61 1.0 0.0 1.0 CB P:CYS61 2.2 0.0 1.0 S2 P:SF41610 2.2 25.1 1.0 S4 P:SF41610 2.2 27.7 1.0 S1 P:SF41610 2.3 29.6 1.0 FE4 P:SF41610 2.7 30.0 1.0 FE1 P:SF41610 2.7 29.9 1.0 FE2 P:SF41610 2.8 30.5 1.0 CD1 P:ILE72 3.1 0.0 1.0 CA P:CYS61 3.4 0.0 1.0 N P:CYS61 3.7 0.0 1.0 S3 P:SF41610 3.8 27.7 1.0 C P:CYS61 4.0 0.0 1.0 N P:VAL62 4.0 0.0 1.0 CG1 P:ILE72 4.2 0.0 1.0 CG2 P:ILE70 4.3 0.0 1.0 CD1 P:ILE70 4.6 0.0 1.0 CG2 P:VAL62 4.7 0.0 1.0 O P:CYS61 4.9 0.0 1.0

Iron binding site 4 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1610 b:30.0 occ:1.00 FE4 P:SF41610 0.0 30.0 1.0 S3 P:SF41610 2.1 27.7 1.0 S1 P:SF41610 2.1 29.6 1.0 S2 P:SF41610 2.2 25.1 1.0 FE3 P:SF41610 2.7 29.9 1.0 FE2 P:SF41610 2.7 30.5 1.0 FE1 P:SF41610 2.8 29.9 1.0 SG P:CYS58 2.8 0.0 1.0 CD1 P:ILE72 3.0 0.0 1.0 SG P:CYS61 3.1 0.0 1.0 N P:GLY59 3.2 0.0 1.0 S4 P:SF41610 3.8 27.7 1.0 CA P:GLY59 3.8 0.0 1.0 N P:ILE60 3.9 0.0 1.0 N P:CYS61 3.9 0.0 1.0 CB P:CYS61 4.0 0.0 1.0 SG P:CYS55 4.0 0.0 1.0 C P:GLY59 4.2 0.0 1.0 N P:CYS58 4.2 0.0 1.0 C P:CYS58 4.3 0.0 1.0 CB P:CYS58 4.3 0.0 1.0 CA P:CYS58 4.5 0.0 1.0 CG1 P:ILE72 4.5 0.0 1.0 CA P:CYS61 4.5 0.0 1.0 CA P:ILE60 4.8 0.0 1.0 C P:ILE60 4.9 0.0 1.0 C P:GLY57 4.9 0.0 1.0 N P:GLY57 4.9 0.0 1.0

Iron binding site 5 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1611 b:22.7 occ:1.00 FE1 P:SF41611 0.0 22.7 1.0 S4 P:SF41611 2.3 20.4 1.0 S2 P:SF41611 2.3 20.2 1.0 S3 P:SF41611 2.3 21.1 1.0 FE3 P:SF41611 2.7 23.3 1.0 FE2 P:SF41611 2.7 23.3 1.0 FE4 P:SF41611 2.8 22.6 1.0 SG P:CYS25 3.2 0.0 1.0 S1 P:SF41611 3.9 21.6 1.0 SG P:CYS21 3.9 0.0 1.0 SG P:CYS16 4.1 0.0 1.0 N P:CYS25 4.4 0.0 1.0 N P:GLU24 4.5 0.0 1.0 CB P:CYS25 4.6 0.0 1.0 O P:ARG22 4.7 0.0 1.0 SG P:CYS65 4.7 0.0 1.0 CB P:GLU24 4.8 0.0 1.0 CD P:PRO66 4.9 0.0 1.0

Iron binding site 6 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1611 b:23.3 occ:1.00 FE2 P:SF41611 0.0 23.3 1.0 SG P:CYS21 1.7 0.0 1.0 S4 P:SF41611 2.2 20.4 1.0 S3 P:SF41611 2.2 21.1 1.0 S1 P:SF41611 2.3 21.6 1.0 FE4 P:SF41611 2.7 22.6 1.0 FE1 P:SF41611 2.7 22.7 1.0 FE3 P:SF41611 2.8 23.3 1.0 O P:LYS17 3.3 0.0 1.0 O P:ARG22 3.5 0.0 1.0 CB P:CYS21 3.5 0.0 1.0 S2 P:SF41611 3.8 20.2 1.0 N P:CYS21 4.0 0.0 1.0 CA P:PRO18 4.0 0.0 1.0 CD P:PRO66 4.1 0.0 1.0 CG P:PRO66 4.2 0.0 1.0 CA P:CYS21 4.2 0.0 1.0 C P:LYS17 4.2 0.0 1.0 C P:CYS21 4.5 0.0 1.0 N P:PRO18 4.6 0.0 1.0 C P:ARG22 4.7 0.0 1.0 C P:PRO18 4.7 0.0 1.0 CB P:GLU24 4.7 0.0 1.0 N P:GLU24 4.8 0.0 1.0 N P:ARG22 4.9 0.0 1.0 O P:PRO18 4.9 0.0 1.0 OE1 P:GLU24 4.9 0.0 1.0 CB P:PRO18 5.0 0.0 1.0 O P:CYS21 5.0 0.0 1.0

Iron binding site 7 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1611 b:23.3 occ:1.00 FE3 P:SF41611 0.0 23.3 1.0 S2 P:SF41611 2.2 20.2 1.0 S4 P:SF41611 2.2 20.4 1.0 S1 P:SF41611 2.3 21.6 1.0 FE4 P:SF41611 2.6 22.6 1.0 FE1 P:SF41611 2.7 22.7 1.0 FE2 P:SF41611 2.8 23.3 1.0 SG P:CYS65 2.9 0.0 1.0 CD P:PRO66 3.1 0.0 1.0 CG P:PRO66 3.6 0.0 1.0 S3 P:SF41611 3.7 21.1 1.0 CD2 P:PHE67 3.8 0.0 1.0 SG P:CYS21 3.8 0.0 1.0 N P:PRO66 4.0 0.0 1.0 CB P:CYS65 4.1 0.0 1.0 CA P:CYS65 4.2 0.0 1.0 CE2 P:PHE67 4.4 0.0 1.0 N P:PHE67 4.4 0.0 1.0 SG P:CYS16 4.5 0.0 1.0 C P:CYS65 4.5 0.0 1.0 CB P:ALA69 4.6 0.0 1.0 O P:LYS17 4.8 0.0 1.0 CG P:PHE67 4.9 0.0 1.0 CB P:PRO66 5.0 0.0 1.0

Iron binding site 8 out of 8 in the Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Cryo-Em of A Pre-Recycling Complex with ERF1 and ABCE1 within 5.0Å range: probe atom residue distance (Å) B Occ P:Fe1611 b:22.6 occ:1.00 FE4 P:SF41611 0.0 22.6 1.0 S3 P:SF41611 2.1 21.1 1.0 S1 P:SF41611 2.1 21.6 1.0 S2 P:SF41611 2.1 20.2 1.0 SG P:CYS16 2.4 0.0 1.0 FE3 P:SF41611 2.6 23.3 1.0 FE2 P:SF41611 2.7 23.3 1.0 FE1 P:SF41611 2.8 22.7 1.0 O P:LYS17 3.0 0.0 1.0 N P:LYS17 3.1 0.0 1.0 C P:LYS17 3.2 0.0 1.0 CB P:CYS16 3.6 0.0 1.0 N P:PRO18 3.7 0.0 1.0 CA P:CYS16 3.7 0.0 1.0 S4 P:SF41611 3.8 20.4 1.0 C P:CYS16 3.8 0.0 1.0 CA P:PRO18 3.8 0.0 1.0 CA P:LYS17 3.8 0.0 1.0 CB P:PRO18 4.4 0.0 1.0 CD P:PRO18 4.4 0.0 1.0 SG P:CYS21 4.4 0.0 1.0 CD2 P:PHE67 4.8 0.0 1.0 CE2 P:PHE67 4.8 0.0 1.0 O P:CYS16 4.9 0.0 1.0 CB P:LYS17 4.9 0.0 1.0

A.Preis, A.Heuer, C.Barrio-Garcia, A.Hauser, D.E.Eyler, O.Berninghausen, R.Green, T.Becker, R.Beckmann. Cryoelectron Microscopic Structures of Eukaryotic Translation Termination Complexes Containing ERF1-ERF3 or ERF1-ABCE1. Cell Rep. V. 8 59 2014.
ISSN: ISSN 2211-1247
PubMed: 25001285
DOI: 10.1016/J.CELREP.2014.04.058