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Iron in PDB 4d30: Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine

Enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine

All present enzymatic activity of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine:
1.14.13.39;

Protein crystallography data

The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine, PDB code: 4d30 was solved by H.Li, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.429 / 1.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.840, 111.000, 164.000, 90.00, 90.00, 90.00
R / Rfree (%) 18.09 / 23.47

Other elements in 4d30:

The structure of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine (pdb code 4d30). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine, PDB code: 4d30:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4d30

Go back to Iron Binding Sites List in 4d30
Iron binding site 1 out of 2 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe750

b:18.4
occ:1.00
 FE A:HEM750 0.0 18.4 1.0
NC A:HEM750 2.0 19.7 1.0
NB A:HEM750 2.0 19.9 1.0
ND A:HEM750 2.1 26.4 1.0
NA A:HEM750 2.1 22.2 1.0
N01 A:EG8800 2.3 17.6 1.0
SG A:CYS415 2.4 21.3 1.0
C4C A:HEM750 3.0 15.3 1.0
C1C A:HEM750 3.0 17.5 1.0
C1D A:HEM750 3.0 23.5 1.0
C1B A:HEM750 3.1 17.5 1.0
C4D A:HEM750 3.1 19.0 1.0
C4A A:HEM750 3.1 18.0 1.0
C4B A:HEM750 3.1 24.4 1.0
C1A A:HEM750 3.1 16.3 1.0
C02 A:EG8800 3.2 19.0 1.0
C05 A:EG8800 3.4 27.4 1.0
CHD A:HEM750 3.4 21.8 1.0
CHB A:HEM750 3.4 22.3 1.0
CHC A:HEM750 3.4 25.0 1.0
CHA A:HEM750 3.5 14.3 1.0
CB A:CYS415 3.5 18.0 1.0
CA A:CYS415 4.2 15.0 1.0
C2C A:HEM750 4.2 18.3 1.0
C3C A:HEM750 4.2 19.5 1.0
C2B A:HEM750 4.3 18.4 1.0
C2D A:HEM750 4.3 22.4 1.0
C3D A:HEM750 4.3 22.1 1.0
C3B A:HEM750 4.3 22.8 1.0
C3A A:HEM750 4.3 20.3 1.0
N03 A:EG8800 4.3 23.1 1.0
C2A A:HEM750 4.3 19.4 1.0
C04 A:EG8800 4.5 28.8 1.0
NE1 A:TRP409 4.6 17.0 1.0
O A:HOH2143 4.9 24.5 1.0
C A:CYS415 4.9 21.1 1.0
N A:GLY417 4.9 17.0 1.0

Iron binding site 2 out of 2 in 4d30

Go back to Iron Binding Sites List in 4d30
Iron binding site 2 out of 2 in the Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Rat Neuronal Nitric Oxide Synthase Heme Domain in Complex with N-2-(2-(1H-Imidazol-1-Yl)Pyrimidin-4-Yl) Ethyl-3-(Pyridin-3-Yl)Propan-1-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe750

b:18.0
occ:1.00
 FE B:HEM750 0.0 18.0 1.0
NB B:HEM750 2.0 21.3 1.0
NC B:HEM750 2.0 10.6 1.0
NA B:HEM750 2.0 18.7 1.0
ND B:HEM750 2.0 9.7 1.0
N01 B:EG8800 2.2 22.0 1.0
SG B:CYS415 2.4 17.4 1.0
C1B B:HEM750 3.0 24.4 1.0
C4B B:HEM750 3.0 25.7 1.0
C4A B:HEM750 3.0 19.4 1.0
C4C B:HEM750 3.0 14.1 1.0
C1C B:HEM750 3.0 14.3 1.0
C1D B:HEM750 3.0 19.6 1.0
C1A B:HEM750 3.1 20.6 1.0
C4D B:HEM750 3.1 14.3 1.0
C02 B:EG8800 3.2 20.4 1.0
C05 B:EG8800 3.3 20.3 1.0
CHB B:HEM750 3.4 23.0 1.0
CHD B:HEM750 3.4 16.1 1.0
CHC B:HEM750 3.4 25.7 1.0
CHA B:HEM750 3.4 16.7 1.0
CB B:CYS415 3.5 16.9 1.0
CA B:CYS415 4.2 13.4 1.0
C2B B:HEM750 4.2 26.2 1.0
C3C B:HEM750 4.2 13.6 1.0
C3B B:HEM750 4.2 25.3 1.0
C3A B:HEM750 4.2 12.6 1.0
C2C B:HEM750 4.2 14.7 1.0
C2A B:HEM750 4.3 22.8 1.0
N03 B:EG8800 4.3 20.8 1.0
C2D B:HEM750 4.3 11.0 1.0
C3D B:HEM750 4.3 14.9 1.0
C04 B:EG8800 4.4 18.6 1.0
NE1 B:TRP409 4.5 14.7 1.0
N B:GLY417 4.8 29.4 1.0
C B:CYS415 4.9 18.4 1.0
O B:HOH2207 4.9 22.0 1.0

Reference:

P.Mukherjee, H.Li, I.F.Sevrioukova, G.Chreifi, P.Martasek, L.J.Roman, T.L.Poulos, R.B.Silverman. Novel 2,4-Disubstituted Pyrimidines As Potent, Selective, and Cell-Permeable Inhibitors of Neuronal Nitric Oxide Synthase. J.Med.Chem. 2014.
ISSN: ESSN 1520-4804
PubMed: 25489882
DOI: 10.1021/JM501719E
Page generated: Mon Aug 5 01:02:31 2024

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