Iron in PDB 4d4p: Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65

The structure of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65, PDB code: 4d4p was solved by S.Glatt, C.W.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	110.614 / 3.00
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	152.060, 152.060, 203.850, 90.00, 90.00, 120.00
R / Rfree (%)	20.79 / 23.37

The binding sites of Iron atom in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65 (pdb code 4d4p). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65, PDB code: 4d4p:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:0.8 occ:1.00 SG A:CYS393 2.2 0.6 1.0 SG A:CYS368 2.3 91.1 1.0 SG A:CYS370 2.3 87.3 1.0 SG A:CYS390 2.3 87.3 1.0 CB A:CYS390 3.4 86.8 1.0 CB A:CYS370 3.4 86.5 1.0 CB A:CYS368 3.4 91.7 1.0 CB A:CYS393 3.8 0.7 1.0 N A:CYS370 4.3 85.4 1.0 CB A:ASP372 4.4 91.9 1.0 CA A:CYS370 4.5 86.0 1.0 C A:SER392 4.6 94.7 1.0 CH2 B:TRP294 4.6 78.9 1.0 N A:CYS393 4.7 0.0 1.0 O A:SER392 4.7 94.6 1.0 CA A:CYS368 4.7 91.1 1.0 CA A:CYS390 4.8 87.6 1.0 CA A:CYS393 4.8 0.3 1.0 C A:CYS368 4.9 90.7 1.0 N A:ASP372 5.0 91.4 1.0 NE2 B:HIS297 5.0 83.2 1.0 N A:SER392 5.0 96.7 1.0 CB A:LEU395 5.0 86.2 1.0

Iron binding site 2 out of 4 in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65 within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe501 b:87.6 occ:1.00 SG C:CYS390 2.3 82.2 1.0 SG C:CYS393 2.3 82.1 1.0 SG C:CYS370 2.3 80.5 1.0 SG C:CYS368 2.4 75.9 1.0 CB C:CYS390 3.4 82.5 1.0 CB C:CYS393 3.4 82.7 1.0 CB C:CYS368 3.5 76.8 1.0 CB C:CYS370 3.6 79.4 1.0 N C:CYS393 3.7 85.5 1.0 CA C:CYS393 4.1 83.9 1.0 CB C:ASP372 4.2 88.0 1.0 CB C:SER392 4.4 82.4 1.0 N C:CYS370 4.5 79.4 1.0 CA C:CYS370 4.6 79.2 1.0 C C:SER392 4.6 80.4 1.0 C C:CYS393 4.7 83.7 1.0 CA C:CYS390 4.8 83.5 1.0 CA C:CYS368 4.8 76.6 1.0 CH2 A:TRP294 4.8 97.4 1.0 CA C:SER392 4.9 82.2 1.0 N C:SER392 4.9 83.0 1.0 N C:ASP372 4.9 87.4 1.0 CB C:LEU395 5.0 78.9 1.0

Iron binding site 3 out of 4 in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65 within 5.0Å range: probe atom residue distance (Å) B Occ G:Fe501 b:0.4 occ:1.00 SG G:CYS393 1.9 0.0 1.0 SG G:CYS370 2.1 0.6 1.0 SG G:CYS368 2.2 97.0 1.0 SG G:CYS390 2.5 0.1 1.0 CB G:CYS370 3.2 99.8 1.0 CB G:CYS368 3.4 98.1 1.0 CB G:CYS390 3.5 0.9 1.0 CB G:CYS393 3.7 0.1 1.0 CD2 G:LEU395 3.9 0.1 1.0 N G:CYS370 4.1 99.9 1.0 CA G:CYS370 4.2 99.4 1.0 O G:SER392 4.3 98.5 1.0 CG G:LEU395 4.3 0.5 1.0 C G:SER392 4.4 99.6 1.0 CB G:ASP372 4.5 0.2 1.0 N G:CYS393 4.5 0.2 1.0 CB G:LEU395 4.6 0.0 1.0 CA G:CYS393 4.7 0.4 1.0 CA G:CYS368 4.7 97.8 1.0 C G:CYS368 4.8 96.4 1.0 N G:ASP372 4.9 1.0 1.0 CA G:CYS390 4.9 0.6 1.0 CH2 E:TRP294 4.9 97.2 1.0 NE2 E:HIS297 5.0 87.0 1.0 CZ2 E:TRP294 5.0 97.3 1.0 C G:CYS370 5.0 0.1 1.0

Iron binding site 4 out of 4 in the Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of the KTI11 KTI13 Heterodimer Spacegroup P65 within 5.0Å range: probe atom residue distance (Å) B Occ H:Fe501 b:0.3 occ:1.00 SG H:CYS368 2.2 92.4 1.0 SG H:CYS370 2.4 94.0 1.0 SG H:CYS390 2.4 97.8 1.0 SG H:CYS393 2.5 0.2 1.0 CB H:CYS393 2.6 0.9 1.0 CB H:CYS390 3.3 98.2 1.0 CB H:CYS368 3.5 94.0 1.0 CB H:CYS370 3.5 92.6 1.0 CA H:CYS393 3.9 0.5 1.0 N H:CYS393 4.1 0.1 1.0 N H:CYS370 4.4 93.8 1.0 CB H:ASP372 4.5 0.9 1.0 CA H:CYS370 4.5 93.0 1.0 C H:SER392 4.7 97.7 1.0 CA H:CYS390 4.7 99.2 1.0 CA H:CYS368 4.8 94.4 1.0 C H:CYS393 4.9 0.1 1.0 OG H:SER392 4.9 0.2 1.0 N H:SER394 4.9 95.9 1.0 C H:CYS368 5.0 93.4 1.0

S.Glatt, R.Zabel, I.Vonkova, A.Kumar, D.J.Netz, A.J.Pierik, V.Rybin, R.Lill, A.Gavin, J.Balbach, K.D.Breunig, C.W.Muller. Structure of the KTI11/KTI13 Heterodimer and Its Double Role in Modifications of Trna and Eukaryotic Elongation Factor 2. Structure V. 23 7 2015.
ISSN: ISSN 0969-2126
PubMed: 25543256
DOI: 10.1016/J.STR.2014.11.008