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Iron in PDB 4dwt: Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution

Protein crystallography data

The structure of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution, PDB code: 4dwt was solved by V.S.De Serrano, J.Zhao, S.Franzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.00 / 2.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.910, 67.470, 68.720, 90.00, 90.00, 90.00
R / Rfree (%) 20 / 23.8

Iron Binding Sites:

The binding sites of Iron atom in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution (pdb code 4dwt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution, PDB code: 4dwt:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4dwt

Go back to Iron Binding Sites List in 4dwt
Iron binding site 1 out of 2 in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:19.7
occ:1.00
FE A:HEM201 0.0 19.7 1.0
NC A:HEM201 2.0 19.9 1.0
NE2 A:HIS89 2.0 19.2 1.0
NA A:HEM201 2.0 19.8 1.0
NB A:HEM201 2.1 18.6 1.0
ND A:HEM201 2.1 20.6 1.0
C A:CMO202 2.2 18.4 1.0
CD2 A:HIS89 2.9 20.7 1.0
CE1 A:HIS89 3.0 19.9 1.0
C4C A:HEM201 3.0 19.9 1.0
C1C A:HEM201 3.1 18.9 1.0
C4A A:HEM201 3.1 19.7 1.0
C1A A:HEM201 3.1 20.5 1.0
C4B A:HEM201 3.1 17.9 1.0
C1D A:HEM201 3.1 20.3 1.0
C1B A:HEM201 3.2 18.2 1.0
C4D A:HEM201 3.2 21.4 1.0
O A:CMO202 3.4 18.7 1.0
CHD A:HEM201 3.5 19.9 1.0
CHC A:HEM201 3.5 18.5 1.0
CHB A:HEM201 3.5 18.4 1.0
CHA A:HEM201 3.6 20.4 1.0
ND1 A:HIS89 4.1 20.1 1.0
CG A:HIS89 4.1 20.5 1.0
C3C A:HEM201 4.3 19.7 1.0
C2C A:HEM201 4.3 19.0 1.0
C2A A:HEM201 4.4 20.3 1.0
C3A A:HEM201 4.4 19.9 1.0
C3B A:HEM201 4.4 17.6 1.0
C2D A:HEM201 4.5 20.8 1.0
C2B A:HEM201 4.5 17.3 1.0
C3D A:HEM201 4.5 21.8 1.0
CG2 A:VAL59 4.7 15.7 1.0
CE A:MET86 4.7 18.6 0.6
CG1 A:VAL59 4.7 14.9 1.0

Iron binding site 2 out of 2 in 4dwt

Go back to Iron Binding Sites List in 4dwt
Iron binding site 2 out of 2 in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:19.0
occ:1.00
FE B:HEM201 0.0 19.0 1.0
C B:CMO202 1.9 11.6 0.8
NC B:HEM201 1.9 17.8 1.0
NA B:HEM201 2.0 18.4 1.0
NB B:HEM201 2.1 17.9 1.0
ND B:HEM201 2.1 19.2 1.0
NE2 B:HIS89 2.3 19.9 1.0
C4C B:HEM201 3.0 17.8 1.0
O B:CMO202 3.0 12.1 0.8
C1C B:HEM201 3.0 17.4 1.0
C1A B:HEM201 3.1 18.5 1.0
C4B B:HEM201 3.1 17.9 1.0
C4A B:HEM201 3.1 18.3 1.0
C1D B:HEM201 3.1 19.2 1.0
C4D B:HEM201 3.2 19.9 1.0
C1B B:HEM201 3.2 17.9 1.0
CE1 B:HIS89 3.2 19.7 1.0
CD2 B:HIS89 3.3 19.2 1.0
CHD B:HEM201 3.4 18.1 1.0
CHC B:HEM201 3.4 17.4 1.0
CHA B:HEM201 3.6 18.9 1.0
CHB B:HEM201 3.6 17.5 1.0
CG2 B:VAL59 4.2 14.5 1.0
C3C B:HEM201 4.2 17.5 1.0
C2C B:HEM201 4.3 17.5 1.0
C2A B:HEM201 4.4 18.3 1.0
C3A B:HEM201 4.4 18.1 1.0
ND1 B:HIS89 4.4 19.4 1.0
C3B B:HEM201 4.4 17.5 1.0
CG B:HIS89 4.4 19.5 1.0
C2D B:HEM201 4.5 20.2 1.0
C3D B:HEM201 4.5 20.7 1.0
C2B B:HEM201 4.5 17.4 1.0
CG1 B:VAL59 4.7 13.9 1.0
NE2 B:HIS55 4.8 20.7 0.2
CE B:MET86 5.0 19.6 1.0

Reference:

V.S.De Serrano, J.Zhao, S.Franzen. A Unique Role For the Distal Histidine Observed in Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structures To Be Published.
Page generated: Mon Aug 5 01:28:00 2024

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