Iron in PDB 4dwt: Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution
Protein crystallography data
The structure of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution, PDB code: 4dwt
was solved by
V.S.De Serrano,
J.Zhao,
S.Franzen,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.00 /
2.05
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
57.910,
67.470,
68.720,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20 /
23.8
|
Iron Binding Sites:
The binding sites of Iron atom in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution
(pdb code 4dwt). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution, PDB code: 4dwt:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 4dwt
Go back to
Iron Binding Sites List in 4dwt
Iron binding site 1 out
of 2 in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:19.7
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
19.7
|
1.0
|
NC
|
A:HEM201
|
2.0
|
19.9
|
1.0
|
NE2
|
A:HIS89
|
2.0
|
19.2
|
1.0
|
NA
|
A:HEM201
|
2.0
|
19.8
|
1.0
|
NB
|
A:HEM201
|
2.1
|
18.6
|
1.0
|
ND
|
A:HEM201
|
2.1
|
20.6
|
1.0
|
C
|
A:CMO202
|
2.2
|
18.4
|
1.0
|
CD2
|
A:HIS89
|
2.9
|
20.7
|
1.0
|
CE1
|
A:HIS89
|
3.0
|
19.9
|
1.0
|
C4C
|
A:HEM201
|
3.0
|
19.9
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
18.9
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
19.7
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
20.5
|
1.0
|
C4B
|
A:HEM201
|
3.1
|
17.9
|
1.0
|
C1D
|
A:HEM201
|
3.1
|
20.3
|
1.0
|
C1B
|
A:HEM201
|
3.2
|
18.2
|
1.0
|
C4D
|
A:HEM201
|
3.2
|
21.4
|
1.0
|
O
|
A:CMO202
|
3.4
|
18.7
|
1.0
|
CHD
|
A:HEM201
|
3.5
|
19.9
|
1.0
|
CHC
|
A:HEM201
|
3.5
|
18.5
|
1.0
|
CHB
|
A:HEM201
|
3.5
|
18.4
|
1.0
|
CHA
|
A:HEM201
|
3.6
|
20.4
|
1.0
|
ND1
|
A:HIS89
|
4.1
|
20.1
|
1.0
|
CG
|
A:HIS89
|
4.1
|
20.5
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
19.7
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
19.0
|
1.0
|
C2A
|
A:HEM201
|
4.4
|
20.3
|
1.0
|
C3A
|
A:HEM201
|
4.4
|
19.9
|
1.0
|
C3B
|
A:HEM201
|
4.4
|
17.6
|
1.0
|
C2D
|
A:HEM201
|
4.5
|
20.8
|
1.0
|
C2B
|
A:HEM201
|
4.5
|
17.3
|
1.0
|
C3D
|
A:HEM201
|
4.5
|
21.8
|
1.0
|
CG2
|
A:VAL59
|
4.7
|
15.7
|
1.0
|
CE
|
A:MET86
|
4.7
|
18.6
|
0.6
|
CG1
|
A:VAL59
|
4.7
|
14.9
|
1.0
|
|
Iron binding site 2 out
of 2 in 4dwt
Go back to
Iron Binding Sites List in 4dwt
Iron binding site 2 out
of 2 in the Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structure at 2.05 Angstrom Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:19.0
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
19.0
|
1.0
|
C
|
B:CMO202
|
1.9
|
11.6
|
0.8
|
NC
|
B:HEM201
|
1.9
|
17.8
|
1.0
|
NA
|
B:HEM201
|
2.0
|
18.4
|
1.0
|
NB
|
B:HEM201
|
2.1
|
17.9
|
1.0
|
ND
|
B:HEM201
|
2.1
|
19.2
|
1.0
|
NE2
|
B:HIS89
|
2.3
|
19.9
|
1.0
|
C4C
|
B:HEM201
|
3.0
|
17.8
|
1.0
|
O
|
B:CMO202
|
3.0
|
12.1
|
0.8
|
C1C
|
B:HEM201
|
3.0
|
17.4
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
18.5
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
17.9
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
18.3
|
1.0
|
C1D
|
B:HEM201
|
3.1
|
19.2
|
1.0
|
C4D
|
B:HEM201
|
3.2
|
19.9
|
1.0
|
C1B
|
B:HEM201
|
3.2
|
17.9
|
1.0
|
CE1
|
B:HIS89
|
3.2
|
19.7
|
1.0
|
CD2
|
B:HIS89
|
3.3
|
19.2
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
18.1
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
17.4
|
1.0
|
CHA
|
B:HEM201
|
3.6
|
18.9
|
1.0
|
CHB
|
B:HEM201
|
3.6
|
17.5
|
1.0
|
CG2
|
B:VAL59
|
4.2
|
14.5
|
1.0
|
C3C
|
B:HEM201
|
4.2
|
17.5
|
1.0
|
C2C
|
B:HEM201
|
4.3
|
17.5
|
1.0
|
C2A
|
B:HEM201
|
4.4
|
18.3
|
1.0
|
C3A
|
B:HEM201
|
4.4
|
18.1
|
1.0
|
ND1
|
B:HIS89
|
4.4
|
19.4
|
1.0
|
C3B
|
B:HEM201
|
4.4
|
17.5
|
1.0
|
CG
|
B:HIS89
|
4.4
|
19.5
|
1.0
|
C2D
|
B:HEM201
|
4.5
|
20.2
|
1.0
|
C3D
|
B:HEM201
|
4.5
|
20.7
|
1.0
|
C2B
|
B:HEM201
|
4.5
|
17.4
|
1.0
|
CG1
|
B:VAL59
|
4.7
|
13.9
|
1.0
|
NE2
|
B:HIS55
|
4.8
|
20.7
|
0.2
|
CE
|
B:MET86
|
5.0
|
19.6
|
1.0
|
|
Reference:
V.S.De Serrano,
J.Zhao,
S.Franzen.
A Unique Role For the Distal Histidine Observed in Carbonmonoxy Dehaloperoxidase-Hemoglobin A Structures To Be Published.
Page generated: Mon Aug 5 01:28:00 2024
|