Atomistry » Iron » PDB 4egn-4f2n » 4eia
Atomistry »
  Iron »
    PDB 4egn-4f2n »
      4eia »

Iron in PDB 4eia: Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide

Protein crystallography data

The structure of Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide, PDB code: 4eia was solved by S.H.Knauer, H.Dobbek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.67 / 3.00
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 113.136, 113.136, 56.032, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 23.6

Iron Binding Sites:

The binding sites of Iron atom in the Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide (pdb code 4eia). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide, PDB code: 4eia:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4eia

Go back to Iron Binding Sites List in 4eia
Iron binding site 1 out of 2 in the Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:60.8
occ:1.00
FE2 A:SF4301 0.0 60.8 1.0
S1 A:SF4301 2.3 66.8 1.0
S3 A:SF4301 2.3 59.4 1.0
FE4 A:SF4301 2.6 64.3 1.0
N A:ALA126 4.3 72.0 1.0
SG A:CYS125 4.7 68.8 1.0
SG A:CYS164 4.8 67.8 1.0
CB A:ALA126 4.8 64.3 1.0
CA A:CYS125 4.9 74.5 1.0

Iron binding site 2 out of 2 in 4eia

Go back to Iron Binding Sites List in 4eia
Iron binding site 2 out of 2 in the Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Activator of the 2-Hydroxyisocaproyl-Coa Dehydratase From Clostridium Difficile Without Nucleotide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:64.3
occ:1.00
FE4 A:SF4301 0.0 64.3 1.0
S1 A:SF4301 2.3 66.8 1.0
S3 A:SF4301 2.3 59.4 1.0
SG A:CYS125 2.4 68.8 1.0
FE2 A:SF4301 2.6 60.8 1.0
CB A:CYS125 3.7 75.6 1.0
N A:ALA126 3.9 72.0 1.0
CA A:CYS125 4.0 74.5 1.0
N A:ALA127 4.2 62.4 1.0
C A:CYS125 4.4 76.6 1.0
CB A:ALA127 4.4 61.2 1.0
CA A:CYS164 4.7 75.6 1.0
N A:THR165 4.8 73.3 1.0
CB A:CYS164 4.8 74.2 1.0
SG A:CYS164 4.9 67.8 1.0
OG1 A:THR165 4.9 83.8 1.0
CA A:ALA126 4.9 69.9 1.0
CA A:ALA127 5.0 68.8 1.0

Reference:

S.H.Knauer, W.Buckel, H.Dobbek. On the Atp-Dependent Activation of the Radical Enzyme (R)-2-Hydroxyisocaproyl-Coa Dehydratase. Biochemistry V. 51 6609 2012.
ISSN: ISSN 0006-2960
PubMed: 22827463
DOI: 10.1021/BI300571Z
Page generated: Mon Aug 5 01:38:13 2024

Last articles

Cl in 3N85
Cl in 3N7H
Cl in 3N73
Cl in 3N7O
Cl in 3N79
Cl in 3N66
Cl in 3N59
Cl in 3N6X
Cl in 3N6H
Cl in 3N64
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy