Atomistry » Iron » PDB 4f2n-4ffk » 4fan
Atomistry »
  Iron »
    PDB 4f2n-4ffk »
      4fan »

Iron in PDB 4fan: Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days

Enzymatic activity of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days

All present enzymatic activity of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days:
1.4.9.1; 1.4.99.3;

Protein crystallography data

The structure of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days, PDB code: 4fan was solved by E.T.Yukl, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.49 / 2.08
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 55.530, 83.520, 107.780, 109.94, 91.54, 105.78
R / Rfree (%) 17 / 23.4

Other elements in 4fan:

The structure of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days also contains other interesting chemical elements:

Calcium (Ca) 2 atoms
Sodium (Na) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days (pdb code 4fan). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days, PDB code: 4fan:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 4fan

Go back to Iron Binding Sites List in 4fan
Iron binding site 1 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:39.1
occ:1.00
FE A:HEC402 0.0 39.1 1.0
NE2 A:HIS35 2.0 36.8 1.0
NB A:HEC402 2.0 37.1 1.0
NC A:HEC402 2.1 41.1 1.0
ND A:HEC402 2.1 39.0 1.0
NA A:HEC402 2.1 37.4 1.0
O A:HOH535 2.3 10.2 0.5
CE1 A:HIS35 2.9 37.4 1.0
CD2 A:HIS35 3.0 37.8 1.0
C1B A:HEC402 3.0 38.0 1.0
C1D A:HEC402 3.1 41.1 1.0
C4D A:HEC402 3.1 40.7 1.0
C4B A:HEC402 3.1 39.0 1.0
C1C A:HEC402 3.1 42.4 1.0
C4C A:HEC402 3.1 43.8 1.0
C1A A:HEC402 3.1 36.2 1.0
C4A A:HEC402 3.1 35.2 1.0
CHD A:HEC402 3.4 41.6 1.0
CHA A:HEC402 3.4 36.5 1.0
CHC A:HEC402 3.4 38.5 1.0
CHB A:HEC402 3.4 34.2 1.0
O A:HOH535 3.6 5.1 0.5
ND1 A:HIS35 4.1 37.8 1.0
NE2 A:GLN103 4.1 43.0 1.0
CG A:HIS35 4.1 37.8 1.0
CG A:PRO107 4.2 44.0 1.0
C2B A:HEC402 4.3 37.4 1.0
C3D A:HEC402 4.4 39.8 1.0
C2D A:HEC402 4.4 39.2 1.0
C3B A:HEC402 4.4 34.8 1.0
C2C A:HEC402 4.4 40.7 1.0
C3C A:HEC402 4.4 40.9 1.0
C2A A:HEC402 4.4 37.0 1.0
C3A A:HEC402 4.4 34.7 1.0
CD2 A:LEU70 4.8 39.5 1.0
CB A:PRO107 4.8 44.1 1.0

Iron binding site 2 out of 4 in 4fan

Go back to Iron Binding Sites List in 4fan
Iron binding site 2 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe403

b:38.9
occ:1.00
FE A:HEC403 0.0 38.9 1.0
OH A:TYR294 1.9 39.2 1.0
ND A:HEC403 2.0 38.8 1.0
NB A:HEC403 2.1 36.4 1.0
NC A:HEC403 2.1 38.0 1.0
NE2 A:HIS205 2.1 39.4 1.0
NA A:HEC403 2.1 38.5 1.0
CZ A:TYR294 2.8 38.9 1.0
C1D A:HEC403 3.0 40.1 1.0
C1B A:HEC403 3.0 41.9 1.0
C4C A:HEC403 3.0 37.3 1.0
C4A A:HEC403 3.0 38.9 1.0
CD2 A:HIS205 3.1 31.7 1.0
C4D A:HEC403 3.1 40.4 1.0
CE1 A:HIS205 3.1 38.1 1.0
C1C A:HEC403 3.1 37.9 1.0
C4B A:HEC403 3.1 39.7 1.0
C1A A:HEC403 3.1 36.6 1.0
CHD A:HEC403 3.3 36.9 1.0
CHB A:HEC403 3.3 39.5 1.0
CHA A:HEC403 3.4 36.1 1.0
CHC A:HEC403 3.5 35.8 1.0
CE1 A:TYR294 3.6 35.3 1.0
CE2 A:TYR294 3.7 37.3 1.0
ND1 A:HIS205 4.2 36.1 1.0
CG A:HIS205 4.2 37.1 1.0
C3D A:HEC403 4.3 41.8 1.0
C2D A:HEC403 4.3 39.5 1.0
C3C A:HEC403 4.3 39.5 1.0
C2B A:HEC403 4.3 41.6 1.0
C2C A:HEC403 4.3 38.4 1.0
C3B A:HEC403 4.3 40.1 1.0
C2A A:HEC403 4.4 39.9 1.0
C3A A:HEC403 4.4 39.7 1.0
CD1 A:TYR294 4.8 34.9 1.0
CD2 A:TYR294 4.9 38.2 1.0

Iron binding site 3 out of 4 in 4fan

Go back to Iron Binding Sites List in 4fan
Iron binding site 3 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe402

b:30.7
occ:1.00
FE B:HEC402 0.0 30.7 1.0
NE2 B:HIS35 2.0 28.1 1.0
NA B:HEC402 2.0 33.7 1.0
NB B:HEC402 2.0 33.7 1.0
NC B:HEC402 2.1 33.6 1.0
ND B:HEC402 2.1 30.2 1.0
CD2 B:HIS35 3.0 24.7 1.0
CE1 B:HIS35 3.0 25.8 1.0
C1B B:HEC402 3.0 33.6 1.0
C4A B:HEC402 3.0 30.6 1.0
C4C B:HEC402 3.0 33.0 1.0
C4B B:HEC402 3.1 33.3 1.0
C1D B:HEC402 3.1 28.9 1.0
C1C B:HEC402 3.1 32.7 1.0
C1A B:HEC402 3.1 30.2 1.0
C4D B:HEC402 3.1 29.2 1.0
CHD B:HEC402 3.3 30.3 1.0
CHB B:HEC402 3.4 29.9 1.0
CHC B:HEC402 3.5 31.2 1.0
CHA B:HEC402 3.5 26.6 1.0
O B:HOH674 3.9 34.0 1.0
NE2 B:GLN103 4.0 32.2 1.0
CG B:PRO107 4.1 35.8 1.0
ND1 B:HIS35 4.1 25.8 1.0
CG B:HIS35 4.1 24.4 1.0
C3A B:HEC402 4.3 28.3 1.0
C2B B:HEC402 4.3 32.2 1.0
C3C B:HEC402 4.3 30.1 1.0
C2C B:HEC402 4.3 34.1 1.0
C3B B:HEC402 4.4 31.1 1.0
C2A B:HEC402 4.4 28.0 1.0
C2D B:HEC402 4.4 25.9 1.0
C3D B:HEC402 4.4 29.6 1.0
CB B:PRO107 4.8 35.0 1.0
CG2 B:THR67 4.8 28.3 1.0
CD2 B:LEU70 4.9 31.2 1.0

Iron binding site 4 out of 4 in 4fan

Go back to Iron Binding Sites List in 4fan
Iron binding site 4 out of 4 in the Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Wt Maug in Complex with Pre-Methylamine Dehydrogenase Aged 40 Days within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe403

b:25.0
occ:1.00
FE B:HEC403 0.0 25.0 1.0
OH B:TYR294 2.0 23.5 1.0
ND B:HEC403 2.0 23.9 1.0
NC B:HEC403 2.0 22.0 1.0
NA B:HEC403 2.1 24.2 1.0
NB B:HEC403 2.1 24.6 1.0
NE2 B:HIS205 2.1 18.4 1.0
CZ B:TYR294 2.8 22.4 1.0
C1D B:HEC403 3.0 26.1 1.0
C4D B:HEC403 3.0 19.7 1.0
C4C B:HEC403 3.0 24.3 1.0
CE1 B:HIS205 3.0 21.7 1.0
C1C B:HEC403 3.0 18.3 1.0
C1A B:HEC403 3.1 20.8 1.0
C4A B:HEC403 3.1 20.0 1.0
CD2 B:HIS205 3.1 18.0 1.0
C1B B:HEC403 3.1 25.7 1.0
C4B B:HEC403 3.1 19.5 1.0
CHD B:HEC403 3.4 18.9 1.0
CHA B:HEC403 3.4 18.4 1.0
CHB B:HEC403 3.4 23.1 1.0
CE1 B:TYR294 3.5 24.2 1.0
CHC B:HEC403 3.5 18.4 1.0
CE2 B:TYR294 3.7 21.4 1.0
ND1 B:HIS205 4.1 17.5 1.0
CG B:HIS205 4.2 22.6 1.0
C3D B:HEC403 4.3 20.7 1.0
C2D B:HEC403 4.3 20.8 1.0
C2C B:HEC403 4.3 22.2 1.0
C3B B:HEC403 4.3 23.3 1.0
C3A B:HEC403 4.3 20.8 1.0
C3C B:HEC403 4.4 19.9 1.0
C2A B:HEC403 4.4 22.5 1.0
C2B B:HEC403 4.4 25.6 1.0
CD1 B:TYR294 4.7 20.8 1.0
CD2 B:TYR294 4.9 21.1 1.0

Reference:

E.T.Yukl, F.Liu, J.Krzystek, S.Shin, L.M.Jensen, V.L.Davidson, C.M.Wilmot, A.Liu. Diradical Intermediate Within the Context of Tryptophan Tryptophylquinone Biosynthesis. Proc.Natl.Acad.Sci.Usa V. 110 4569 2013.
ISSN: ISSN 0027-8424
PubMed: 23487750
DOI: 10.1073/PNAS.1215011110
Page generated: Sun Dec 13 15:33:56 2020

Last articles

Zn in 8PFC
Zn in 8SF0
Zn in 8SOJ
Zn in 8SOK
Zn in 8SYI
Zn in 8SLG
Zn in 8SEX
Zn in 8SEZ
Zn in 8SJG
Zn in 8SEY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy