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Iron in PDB 4gam: Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit

Enzymatic activity of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit

All present enzymatic activity of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit:
1.14.13.25;

Protein crystallography data

The structure of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit, PDB code: 4gam was solved by S.J.Lee, S.J.Lippard, U.-S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 183.590, 248.970, 122.290, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 25.8

Iron Binding Sites:

The binding sites of Iron atom in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit (pdb code 4gam). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit, PDB code: 4gam:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 4gam

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Iron binding site 1 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe601

b:46.3
occ:1.00
 OE1 A:GLU243 2.0 45.9 1.0
OE2 A:GLU209 2.0 35.8 1.0
OE2 A:GLU243 2.1 52.8 1.0
OE2 A:GLU144 2.2 33.6 1.0
OE1 A:GLU144 2.3 48.6 1.0
CD A:GLU243 2.3 53.4 1.0
ND1 A:HIS246 2.5 42.7 1.0
CD A:GLU144 2.5 36.2 1.0
CE1 A:HIS246 2.7 47.0 1.0
FE A:FE602 2.9 36.6 1.0
CD A:GLU209 3.0 47.5 1.0
O A:HOH711 3.2 10.5 1.0
CG A:GLU209 3.6 54.1 1.0
OE1 A:GLU114 3.7 65.2 1.0
CG A:HIS246 3.8 38.5 1.0
CG A:GLU243 3.8 57.9 1.0
NE2 A:HIS246 4.0 42.0 1.0
CG A:GLU144 4.0 15.6 1.0
OE1 A:GLU209 4.1 45.1 1.0
ND1 A:HIS147 4.4 37.0 1.0
CD2 A:HIS246 4.5 36.6 1.0
CB A:HIS246 4.5 37.4 1.0
CD A:GLU114 4.5 60.9 1.0
CE1 A:HIS147 4.6 33.4 1.0
OE2 A:GLU114 4.6 58.6 1.0
CB A:GLU243 4.6 59.8 1.0
CB A:ALA117 4.7 15.8 1.0
NE2 A:GLN140 4.8 35.7 1.0
CA A:GLU243 4.9 61.5 1.0
CB A:GLU209 4.9 53.6 1.0
CB A:GLU144 5.0 30.2 1.0

Iron binding site 2 out of 8 in 4gam

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Iron binding site 2 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe602

b:36.6
occ:1.00
 OE1 A:GLU114 1.8 65.2 1.0
OE2 A:GLU243 1.9 52.8 1.0
ND1 A:HIS147 2.1 37.0 1.0
OE1 A:GLU144 2.1 48.6 1.0
CD A:GLU114 2.2 60.9 1.0
OE2 A:GLU114 2.3 58.6 1.0
FE A:FE601 2.9 46.3 1.0
CE1 A:HIS147 2.9 33.4 1.0
CD A:GLU243 3.0 53.4 1.0
CG A:HIS147 3.1 25.1 1.0
CD A:GLU144 3.2 36.2 1.0
O A:HOH711 3.5 10.5 1.0
CG A:GLU114 3.5 53.3 1.0
CB A:HIS147 3.6 16.4 1.0
OE1 A:GLU243 3.8 45.9 1.0
CG A:GLU243 3.9 57.9 1.0
OE2 A:GLU144 3.9 33.6 1.0
CB A:GLU114 4.1 46.1 1.0
NE2 A:HIS147 4.1 37.2 1.0
CA A:GLU144 4.1 32.1 1.0
CD2 A:HIS147 4.2 15.7 1.0
CB A:GLU144 4.3 30.2 1.0
CG A:GLU144 4.3 15.6 1.0
CE1 A:HIS246 4.5 47.0 1.0
CA A:GLU114 4.6 40.8 1.0
N A:GLU144 4.7 28.5 1.0
OE2 A:GLU209 4.8 35.8 1.0
O A:ASP143 4.9 27.9 1.0
ND1 A:HIS246 4.9 42.7 1.0
CG2 A:ILE239 4.9 26.3 1.0
C A:ASP143 5.0 25.9 1.0

Iron binding site 3 out of 8 in 4gam

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Iron binding site 3 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe601

b:40.5
occ:1.00
 OE1 F:GLU243 1.8 64.2 1.0
OE1 F:GLU144 1.8 86.5 1.0
CD F:GLU114 2.0 41.5 1.0
OE2 F:GLU114 2.2 51.7 1.0
OE1 F:GLU114 2.2 18.6 1.0
CD F:GLU144 2.3 53.1 1.0
OE2 F:GLU144 2.3 38.9 1.0
ND1 F:HIS147 2.5 21.6 1.0
CG F:GLU114 2.9 35.6 1.0
CD F:GLU243 3.0 56.1 1.0
CE1 F:HIS147 3.1 25.2 1.0
FE F:FE602 3.2 46.4 1.0
O F:HOH702 3.4 0.0 1.0
CG F:HIS147 3.7 26.1 1.0
OE2 F:GLU243 3.8 66.2 1.0
CG F:GLU144 3.8 39.1 1.0
CG F:GLU243 4.0 48.9 1.0
CB F:HIS147 4.2 17.7 1.0
CB F:GLU144 4.3 38.4 1.0
CE1 F:HIS246 4.3 14.2 1.0
CB F:GLU114 4.3 34.2 1.0
CA F:GLU144 4.3 33.1 1.0
NE2 F:HIS147 4.3 26.7 1.0
OE2 F:GLU209 4.3 97.0 1.0
ND1 F:HIS246 4.6 35.8 1.0
CD2 F:HIS147 4.6 31.4 1.0
CB F:ALA117 4.8 28.6 1.0
CA F:GLU114 4.9 38.0 1.0
CD F:GLU209 4.9 90.2 1.0
N F:GLU144 4.9 30.0 1.0

Iron binding site 4 out of 8 in 4gam

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Iron binding site 4 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe602

b:46.4
occ:1.00
 OE2 F:GLU243 1.9 66.2 1.0
ND1 F:HIS246 2.1 35.8 1.0
OE2 F:GLU209 2.2 97.0 1.0
OE1 F:GLU209 2.2 87.2 1.0
OE2 F:GLU144 2.2 38.9 1.0
CD F:GLU209 2.3 90.2 1.0
CD F:GLU243 2.4 56.1 1.0
OE1 F:GLU243 2.4 64.2 1.0
CE1 F:HIS246 2.8 14.2 1.0
CD F:GLU144 3.1 53.1 1.0
FE F:FE601 3.2 40.5 1.0
CG F:HIS246 3.3 28.2 1.0
OE1 F:GLU144 3.4 86.5 1.0
CG F:GLU209 3.5 84.8 1.0
O F:HOH702 3.5 0.0 1.0
CG F:GLU243 3.9 48.9 1.0
CB F:HIS246 3.9 14.2 1.0
NE2 F:HIS246 4.0 36.2 1.0
OE2 F:GLU114 4.3 51.7 1.0
CG F:GLU144 4.3 39.1 1.0
OE1 F:GLN140 4.3 51.9 1.0
CB F:GLU209 4.3 67.8 1.0
CD2 F:HIS246 4.3 31.1 1.0
CB F:GLU243 4.4 34.2 1.0
CA F:GLU243 4.5 35.2 1.0
CD F:GLN140 4.8 42.8 1.0
CE1 F:HIS147 4.9 25.2 1.0
CD F:GLU114 4.9 41.5 1.0
CG F:GLN140 4.9 30.7 1.0

Iron binding site 5 out of 8 in 4gam

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Iron binding site 5 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe601

b:75.6
occ:1.00
 OE2 K:GLU243 1.9 58.0 1.0
OE1 K:GLU114 2.0 38.5 1.0
CD K:GLU114 2.0 28.4 1.0
OE2 K:GLU114 2.1 28.5 1.0
CD K:GLU144 2.3 82.1 1.0
OE1 K:GLU144 2.4 98.3 1.0
OE2 K:GLU144 2.4 84.2 1.0
ND1 K:HIS147 2.7 28.7 1.0
FE K:FE602 3.1 70.4 1.0
CG K:GLU114 3.1 50.7 1.0
CD K:GLU243 3.1 69.9 1.0
CE1 K:HIS147 3.1 44.9 1.0
CG K:GLU144 3.2 61.5 1.0
O K:HOH702 3.6 24.2 1.0
CG K:GLU243 3.8 68.2 1.0
CG K:HIS147 4.0 28.6 1.0
CE1 K:HIS246 4.0 51.2 1.0
CA K:GLU144 4.1 40.0 1.0
OE1 K:GLU243 4.1 80.4 1.0
ND1 K:HIS246 4.2 53.3 1.0
CB K:GLU144 4.2 49.8 1.0
CB K:GLU114 4.4 45.3 1.0
NE2 K:HIS147 4.4 47.2 1.0
N K:GLU144 4.5 37.8 1.0
OE2 K:GLU209 4.5 81.8 1.0
CB K:HIS147 4.6 36.8 1.0
C K:ASP143 4.8 31.9 1.0
O K:ASP143 4.8 29.1 1.0
CD2 K:HIS147 4.9 28.8 1.0

Iron binding site 6 out of 8 in 4gam

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Iron binding site 6 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe602

b:70.4
occ:1.00
 OE2 K:GLU243 1.8 58.0 1.0
OE2 K:GLU209 1.9 81.8 1.0
OE2 K:GLU144 2.0 84.2 1.0
OE1 K:GLU243 2.0 80.4 1.0
CD K:GLU243 2.2 69.9 1.0
ND1 K:HIS246 2.4 53.3 1.0
CD K:GLU209 2.4 76.0 1.0
FE K:FE601 3.1 75.6 1.0
CD K:GLU144 3.1 82.1 1.0
CG K:GLU209 3.1 73.2 1.0
OE1 K:GLU209 3.2 73.4 1.0
CE1 K:HIS246 3.2 51.2 1.0
CG K:HIS246 3.4 51.4 1.0
OE1 K:GLU144 3.6 98.3 1.0
O K:HOH702 3.6 24.2 1.0
CG K:GLU243 3.7 68.2 1.0
CB K:HIS246 3.7 52.1 1.0
NE2 K:GLN140 3.8 54.2 1.0
OE1 K:GLU114 3.8 38.5 1.0
CB K:GLU209 4.3 65.8 1.0
NE2 K:HIS246 4.3 49.9 1.0
CG K:GLU144 4.3 61.5 1.0
CD2 K:HIS246 4.4 51.8 1.0
CB K:GLU243 4.5 68.6 1.0
CD K:GLU114 4.6 28.4 1.0
CD K:GLN140 4.7 49.3 1.0
CG K:GLN140 4.8 47.4 1.0
CA K:GLU243 4.8 73.9 1.0
OE2 K:GLU114 4.8 28.5 1.0
CD1 K:LEU204 4.9 33.5 1.0
CD2 K:LEU204 5.0 52.8 1.0

Iron binding site 7 out of 8 in 4gam

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Iron binding site 7 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe601

b:55.9
occ:1.00
 OE1 P:GLU114 1.9 28.4 1.0
CD P:GLU114 2.1 55.6 1.0
OE2 P:GLU114 2.1 65.5 1.0
OE1 P:GLU144 2.2 82.5 1.0
OE2 P:GLU144 2.3 89.0 1.0
OE1 P:GLU243 2.3 57.2 1.0
CD P:GLU144 2.4 74.0 1.0
FE P:FE602 3.0 51.2 1.0
ND1 P:HIS147 3.1 45.6 1.0
CG P:GLU114 3.4 41.3 1.0
CD P:GLU243 3.5 45.6 1.0
CG P:GLU144 3.6 49.5 1.0
CB P:GLU114 3.7 40.5 1.0
CE1 P:HIS147 3.8 45.2 1.0
CB P:GLU144 3.9 43.0 1.0
CA P:GLU144 4.0 45.2 1.0
CG P:HIS147 4.1 39.9 1.0
O P:HOH705 4.1 46.6 1.0
OE2 P:GLU243 4.1 45.0 1.0
CA P:GLU114 4.4 44.7 1.0
CB P:HIS147 4.4 36.1 1.0
CB P:ALA117 4.4 29.3 1.0
CE1 P:HIS246 4.6 38.0 1.0
N P:GLU144 4.7 42.5 1.0
CG P:GLU243 4.7 37.4 1.0
ND1 P:HIS246 4.8 37.9 1.0
O P:GLU114 4.8 36.5 1.0

Iron binding site 8 out of 8 in 4gam

Go back to Iron Binding Sites List in 4gam
Iron binding site 8 out of 8 in the Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Complex Structure of Methane Monooxygenase Hydroxylase and Regulatory Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Fe602

b:51.2
occ:1.00
 OE2 P:GLU243 1.8 45.0 1.0
OE1 P:GLU243 2.0 57.2 1.0
CD P:GLU243 2.1 45.6 1.0
OE2 P:GLU144 2.1 89.0 1.0
OE2 P:GLU209 2.3 86.5 1.0
OE1 P:GLU144 2.5 82.5 1.0
CD P:GLU144 2.5 74.0 1.0
ND1 P:HIS246 2.5 37.9 1.0
FE P:FE601 3.0 55.9 1.0
CE1 P:HIS246 3.2 38.0 1.0
CD P:GLU209 3.4 85.8 1.0
CG P:GLU243 3.5 37.4 1.0
CG P:HIS246 3.8 36.6 1.0
CG P:GLU144 3.9 49.5 1.0
CG P:GLU209 3.9 80.0 1.0
O P:HOH705 4.0 46.6 1.0
OE2 P:GLU114 4.1 65.5 1.0
CB P:HIS246 4.3 40.9 1.0
OE1 P:GLU209 4.3 88.3 1.0
NE2 P:GLN140 4.4 28.7 1.0
NE2 P:HIS246 4.4 37.2 1.0
CB P:GLU243 4.6 41.0 1.0
CA P:GLU243 4.7 48.8 1.0
CD2 P:HIS246 4.7 33.1 1.0
OE1 P:GLU114 4.7 28.4 1.0
CD P:GLU114 4.8 55.6 1.0
CB P:ALA117 4.8 29.3 1.0
CD2 P:LEU204 4.8 46.2 1.0
CG P:GLN140 4.9 41.3 1.0

Reference:

S.J.Lee, M.S.Mccormick, S.J.Lippard, U.S.Cho. Control of Substrate Access to the Active Site in Methane Monooxygenase. Nature V. 494 380 2013.
ISSN: ISSN 0028-0836
PubMed: 23395959
DOI: 10.1038/NATURE11880
Page generated: Mon Aug 5 02:41:03 2024

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