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Iron in PDB 4gzg: Crystal Structures of Dhpa-Co Complex

Protein crystallography data

The structure of Crystal Structures of Dhpa-Co Complex, PDB code: 4gzg was solved by J.Zhao, S.Franzen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 22.24 / 1.49
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.725, 67.270, 69.055, 90.00, 90.00, 90.00
R / Rfree (%) 17.7 / 20.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structures of Dhpa-Co Complex (pdb code 4gzg). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structures of Dhpa-Co Complex, PDB code: 4gzg:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4gzg

Go back to Iron Binding Sites List in 4gzg
Iron binding site 1 out of 2 in the Crystal Structures of Dhpa-Co Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structures of Dhpa-Co Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:11.9
occ:1.00
FE A:HEM201 0.0 11.9 1.0
ND A:HEM201 2.0 11.4 1.0
NB A:HEM201 2.0 10.2 1.0
NA A:HEM201 2.1 11.9 1.0
NC A:HEM201 2.1 10.3 1.0
NE2 A:HIS89 2.1 11.5 1.0
C A:CMO202 2.2 9.7 1.0
C4B A:HEM201 3.0 9.9 1.0
CD2 A:HIS89 3.1 11.9 1.0
C1B A:HEM201 3.1 10.4 1.0
C4C A:HEM201 3.1 9.3 1.0
C1D A:HEM201 3.1 10.4 1.0
C4A A:HEM201 3.1 10.2 1.0
CE1 A:HIS89 3.1 11.9 1.0
C4D A:HEM201 3.1 12.1 1.0
C1C A:HEM201 3.1 11.6 1.0
C1A A:HEM201 3.1 13.6 1.0
O A:CMO202 3.3 16.2 1.0
CHA A:HEM201 3.4 11.1 1.0
CHB A:HEM201 3.4 10.9 1.0
CHD A:HEM201 3.4 11.7 1.0
CHC A:HEM201 3.4 9.4 1.0
ND1 A:HIS89 4.2 12.2 1.0
CG A:HIS89 4.2 11.3 1.0
C3B A:HEM201 4.2 8.9 1.0
C2B A:HEM201 4.2 10.9 1.0
C2D A:HEM201 4.3 14.1 1.0
C2A A:HEM201 4.3 13.3 1.0
C2C A:HEM201 4.3 10.7 1.0
C3C A:HEM201 4.3 11.5 1.0
C3D A:HEM201 4.3 16.2 1.0
C3A A:HEM201 4.3 12.6 1.0
CG2 A:VAL59 4.5 12.7 1.0
CE A:MET86 4.6 11.6 0.5
CG1 A:VAL59 4.9 9.8 1.0

Iron binding site 2 out of 2 in 4gzg

Go back to Iron Binding Sites List in 4gzg
Iron binding site 2 out of 2 in the Crystal Structures of Dhpa-Co Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structures of Dhpa-Co Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:11.0
occ:1.00
FE B:HEM201 0.0 11.0 1.0
NB B:HEM201 2.0 8.9 1.0
NC B:HEM201 2.0 9.3 1.0
ND B:HEM201 2.0 10.2 1.0
C B:CMO206 2.0 9.9 1.0
NA B:HEM201 2.1 10.4 1.0
NE2 B:HIS89 2.1 9.6 1.0
C1C B:HEM201 3.0 9.8 1.0
C1D B:HEM201 3.0 10.7 1.0
C4A B:HEM201 3.1 10.3 1.0
C4B B:HEM201 3.1 7.5 1.0
C4C B:HEM201 3.1 9.2 1.0
C1B B:HEM201 3.1 9.9 1.0
CD2 B:HIS89 3.1 9.3 1.0
C4D B:HEM201 3.1 12.7 1.0
CE1 B:HIS89 3.1 10.4 1.0
C1A B:HEM201 3.1 13.2 1.0
O B:CMO206 3.2 17.4 1.0
CHC B:HEM201 3.4 8.4 1.0
CHD B:HEM201 3.4 12.2 1.0
CHB B:HEM201 3.5 8.8 1.0
CHA B:HEM201 3.5 11.4 1.0
ND1 B:HIS89 4.2 12.4 1.0
CG B:HIS89 4.2 9.1 1.0
C2C B:HEM201 4.3 11.1 1.0
C2B B:HEM201 4.3 8.4 1.0
C2D B:HEM201 4.3 14.6 1.0
C3C B:HEM201 4.3 10.6 1.0
C3B B:HEM201 4.3 9.1 1.0
C3A B:HEM201 4.3 11.3 1.0
C2A B:HEM201 4.3 12.5 1.0
C3D B:HEM201 4.3 15.5 1.0
CG2 B:VAL59 4.5 11.1 1.0
CE B:MET86 4.8 14.0 1.0
CG1 B:VAL59 4.8 9.3 1.0
NE2 B:HIS55 5.0 2.0 0.1

Reference:

J.Zhao, S.Franzen. The Role of Distal Histidine in Carbonmonoxide Dhp Structure To Be Published.
Page generated: Mon Aug 5 03:05:13 2024

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