Iron in PDB 4h13: Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
Enzymatic activity of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
All present enzymatic activity of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds:
1.10.9.1;
Protein crystallography data
The structure of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds, PDB code: 4h13
was solved by
S.S.Hasan,
E.Yamashita,
D.Baniulis,
W.A.Cramer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
34.57 /
3.07
|
|
Space group
|
P 61 2 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
157.197,
157.197,
363.276,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
21.4 /
23.8
|
Other elements in 4h13:
The structure of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
(pdb code 4h13). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the
Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds, PDB code: 4h13:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
Iron binding site 1 out
of 6 in 4h13
Go back to
Iron Binding Sites List in 4h13
Iron binding site 1 out
of 6 in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe302
b:57.8
occ:1.00
|
FE
|
A:HEM302
|
0.0
|
57.8
|
1.0
|
|
NA
|
A:HEM302
|
2.0
|
60.2
|
1.0
|
|
NE2
|
A:HIS86
|
2.0
|
56.0
|
1.0
|
|
NB
|
A:HEM302
|
2.0
|
62.0
|
1.0
|
|
NC
|
A:HEM302
|
2.0
|
56.3
|
1.0
|
|
NE2
|
A:HIS187
|
2.0
|
47.3
|
1.0
|
|
ND
|
A:HEM302
|
2.1
|
60.3
|
1.0
|
|
CE1
|
A:HIS86
|
2.8
|
54.6
|
1.0
|
|
CE1
|
A:HIS187
|
2.9
|
54.0
|
1.0
|
|
HE1
|
A:HIS86
|
2.9
|
65.5
|
1.0
|
|
HE1
|
A:HIS187
|
3.0
|
64.8
|
1.0
|
|
C1A
|
A:HEM302
|
3.0
|
61.2
|
1.0
|
|
C4A
|
A:HEM302
|
3.0
|
71.9
|
1.0
|
|
C4B
|
A:HEM302
|
3.0
|
66.1
|
1.0
|
|
C4C
|
A:HEM302
|
3.1
|
60.8
|
1.0
|
|
C1B
|
A:HEM302
|
3.1
|
69.4
|
1.0
|
|
C1C
|
A:HEM302
|
3.1
|
58.9
|
1.0
|
|
C1D
|
A:HEM302
|
3.1
|
57.3
|
1.0
|
|
C4D
|
A:HEM302
|
3.1
|
59.8
|
1.0
|
|
CD2
|
A:HIS86
|
3.1
|
57.7
|
1.0
|
|
CD2
|
A:HIS187
|
3.1
|
54.2
|
1.0
|
|
HD2
|
A:HIS187
|
3.4
|
65.1
|
1.0
|
|
HD2
|
A:HIS86
|
3.4
|
69.3
|
1.0
|
|
CHC
|
A:HEM302
|
3.4
|
66.4
|
1.0
|
|
CHA
|
A:HEM302
|
3.4
|
58.3
|
1.0
|
|
CHB
|
A:HEM302
|
3.4
|
71.1
|
1.0
|
|
CHD
|
A:HEM302
|
3.4
|
62.2
|
1.0
|
|
ND1
|
A:HIS86
|
4.0
|
50.4
|
1.0
|
|
ND1
|
A:HIS187
|
4.1
|
61.0
|
1.0
|
|
CG
|
A:HIS86
|
4.2
|
63.3
|
1.0
|
|
CG
|
A:HIS187
|
4.2
|
56.4
|
1.0
|
|
C2A
|
A:HEM302
|
4.2
|
66.0
|
1.0
|
|
C3A
|
A:HEM302
|
4.2
|
60.8
|
1.0
|
|
C3B
|
A:HEM302
|
4.3
|
63.6
|
1.0
|
|
C2B
|
A:HEM302
|
4.3
|
72.2
|
1.0
|
|
C3C
|
A:HEM302
|
4.3
|
53.7
|
1.0
|
|
C2C
|
A:HEM302
|
4.3
|
61.7
|
1.0
|
|
HA3
|
A:GLY135
|
4.3
|
85.4
|
1.0
|
|
C2D
|
A:HEM302
|
4.4
|
52.8
|
1.0
|
|
C3D
|
A:HEM302
|
4.4
|
59.3
|
1.0
|
|
HHB
|
A:HEM302
|
4.4
|
85.4
|
1.0
|
|
HHC
|
A:HEM302
|
4.4
|
79.7
|
1.0
|
|
HHA
|
A:HEM302
|
4.4
|
70.0
|
1.0
|
|
HHD
|
A:HEM302
|
4.4
|
74.7
|
1.0
|
|
HA2
|
A:GLY51
|
4.5
|
63.5
|
1.0
|
|
HE21
|
A:GLN47
|
4.5
|
68.3
|
1.0
|
|
HA3
|
A:GLY51
|
4.6
|
63.5
|
1.0
|
|
HD1
|
A:HIS86
|
4.8
|
60.4
|
1.0
|
|
HD2
|
A:PHE131
|
4.8
|
79.2
|
1.0
|
|
HD12
|
A:LEU138
|
4.8
|
67.4
|
1.0
|
|
HD1
|
A:HIS187
|
4.8
|
73.2
|
1.0
|
|
HA2
|
A:GLY135
|
4.9
|
85.4
|
1.0
|
|
HE3
|
A:MET54
|
4.9
|
87.8
|
1.0
|
|
NE2
|
A:GLN47
|
5.0
|
57.0
|
1.0
|
|
Iron binding site 2 out
of 6 in 4h13
Go back to
Iron Binding Sites List in 4h13
Iron binding site 2 out
of 6 in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe303
b:61.9
occ:1.00
|
FE
|
A:HEM303
|
0.0
|
61.9
|
1.0
|
|
NA
|
A:HEM303
|
2.0
|
49.7
|
1.0
|
|
ND
|
A:HEM303
|
2.0
|
61.5
|
1.0
|
|
NC
|
A:HEM303
|
2.1
|
62.7
|
1.0
|
|
NB
|
A:HEM303
|
2.1
|
67.7
|
1.0
|
|
NE2
|
A:HIS100
|
2.1
|
66.0
|
1.0
|
|
NE2
|
A:HIS202
|
2.1
|
62.0
|
1.0
|
|
CE1
|
A:HIS202
|
3.0
|
62.6
|
1.0
|
|
C1A
|
A:HEM303
|
3.0
|
54.5
|
1.0
|
|
C4D
|
A:HEM303
|
3.0
|
69.4
|
1.0
|
|
CE1
|
A:HIS100
|
3.0
|
65.8
|
1.0
|
|
HE1
|
A:HIS202
|
3.1
|
75.1
|
1.0
|
|
C1D
|
A:HEM303
|
3.1
|
60.9
|
1.0
|
|
C4C
|
A:HEM303
|
3.1
|
59.9
|
1.0
|
|
C1C
|
A:HEM303
|
3.1
|
67.8
|
1.0
|
|
C4A
|
A:HEM303
|
3.1
|
59.3
|
1.0
|
|
CD2
|
A:HIS100
|
3.1
|
69.5
|
1.0
|
|
C4B
|
A:HEM303
|
3.1
|
66.2
|
1.0
|
|
C1B
|
A:HEM303
|
3.1
|
67.2
|
1.0
|
|
HE1
|
A:HIS100
|
3.2
|
78.9
|
1.0
|
|
CD2
|
A:HIS202
|
3.2
|
65.7
|
1.0
|
|
HD2
|
A:HIS100
|
3.3
|
83.3
|
1.0
|
|
CHA
|
A:HEM303
|
3.4
|
64.9
|
1.0
|
|
CHD
|
A:HEM303
|
3.4
|
66.8
|
1.0
|
|
CHC
|
A:HEM303
|
3.4
|
68.8
|
1.0
|
|
CHB
|
A:HEM303
|
3.5
|
61.3
|
1.0
|
|
HD2
|
A:HIS202
|
3.5
|
78.8
|
1.0
|
|
ND1
|
A:HIS202
|
4.1
|
57.9
|
1.0
|
|
ND1
|
A:HIS100
|
4.1
|
73.1
|
1.0
|
|
CG
|
A:HIS100
|
4.2
|
80.2
|
1.0
|
|
C2A
|
A:HEM303
|
4.2
|
63.8
|
1.0
|
|
C3D
|
A:HEM303
|
4.3
|
57.6
|
1.0
|
|
C3A
|
A:HEM303
|
4.3
|
62.1
|
1.0
|
|
C3C
|
A:HEM303
|
4.3
|
57.6
|
1.0
|
|
C2C
|
A:HEM303
|
4.3
|
62.7
|
1.0
|
|
C2D
|
A:HEM303
|
4.3
|
62.5
|
1.0
|
|
HD11
|
A:ILE206
|
4.3
|
84.7
|
1.0
|
|
CG
|
A:HIS202
|
4.3
|
68.3
|
1.0
|
|
C3B
|
A:HEM303
|
4.3
|
61.5
|
1.0
|
|
C2B
|
A:HEM303
|
4.3
|
58.1
|
1.0
|
|
HHA
|
A:HEM303
|
4.4
|
77.9
|
1.0
|
|
HHD
|
A:HEM303
|
4.4
|
80.2
|
1.0
|
|
HHC
|
A:HEM303
|
4.4
|
82.6
|
1.0
|
|
HHB
|
A:HEM303
|
4.4
|
73.5
|
1.0
|
|
HG21
|
A:VAL104
|
4.6
|
72.9
|
1.0
|
|
HA3
|
A:GLY121
|
4.7
|
75.6
|
1.0
|
|
HA2
|
A:GLY121
|
4.8
|
75.6
|
1.0
|
|
HD1
|
A:HIS202
|
4.9
|
69.4
|
1.0
|
|
HG22
|
A:THR117
|
4.9
|
93.5
|
1.0
|
|
HD1
|
A:HIS100
|
4.9
|
87.7
|
1.0
|
|
HD12
|
A:LEU124
|
4.9
|
78.2
|
1.0
|
|
HA3
|
A:GLY37
|
5.0
|
84.5
|
1.0
|
|
HA2
|
A:GLY37
|
5.0
|
84.5
|
1.0
|
|
Iron binding site 3 out
of 6 in 4h13
Go back to
Iron Binding Sites List in 4h13
Iron binding site 3 out
of 6 in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe304
b:84.1
occ:1.00
|
FE
|
A:HEM304
|
0.0
|
84.1
|
1.0
|
|
HBD
|
B:TDS201
|
1.2
|
87.9
|
1.0
|
|
OBD
|
B:TDS201
|
1.9
|
73.2
|
1.0
|
|
NA
|
A:HEM304
|
2.0
|
95.1
|
1.0
|
|
ND
|
A:HEM304
|
2.1
|
86.8
|
1.0
|
|
NC
|
A:HEM304
|
2.1
|
98.1
|
1.0
|
|
NB
|
A:HEM304
|
2.1
|
90.7
|
1.0
|
|
O
|
A:HOH402
|
2.5
|
64.7
|
1.0
|
|
C1A
|
A:HEM304
|
3.0
|
99.6
|
1.0
|
|
CAM
|
B:TDS201
|
3.0
|
0.0
|
1.0
|
|
C4A
|
A:HEM304
|
3.0
|
97.0
|
1.0
|
|
C1D
|
A:HEM304
|
3.1
|
86.1
|
1.0
|
|
C4D
|
A:HEM304
|
3.1
|
85.6
|
1.0
|
|
C1C
|
A:HEM304
|
3.1
|
89.2
|
1.0
|
|
C1B
|
A:HEM304
|
3.1
|
89.5
|
1.0
|
|
C4B
|
A:HEM304
|
3.1
|
87.3
|
1.0
|
|
C4C
|
A:HEM304
|
3.1
|
81.2
|
1.0
|
|
HZ
|
B:PHE40
|
3.2
|
0.4
|
1.0
|
|
CHA
|
A:HEM304
|
3.4
|
92.5
|
1.0
|
|
CHD
|
A:HEM304
|
3.4
|
79.4
|
1.0
|
|
CHB
|
A:HEM304
|
3.5
|
88.2
|
1.0
|
|
CHC
|
A:HEM304
|
3.5
|
89.5
|
1.0
|
|
OAK
|
B:TDS201
|
3.6
|
0.4
|
1.0
|
|
CAL
|
B:TDS201
|
3.7
|
0.2
|
1.0
|
|
HAAA
|
A:HEM303
|
3.9
|
77.3
|
1.0
|
|
CZ
|
B:PHE40
|
4.0
|
0.5
|
1.0
|
|
CAN
|
B:TDS201
|
4.0
|
0.5
|
1.0
|
|
HMA
|
A:HEM303
|
4.1
|
68.2
|
1.0
|
|
HA3
|
A:GLY38
|
4.1
|
79.7
|
1.0
|
|
OAO
|
B:TDS201
|
4.2
|
0.9
|
1.0
|
|
C2A
|
A:HEM304
|
4.2
|
98.6
|
1.0
|
|
C3A
|
A:HEM304
|
4.2
|
99.4
|
1.0
|
|
C2D
|
A:HEM304
|
4.3
|
86.5
|
1.0
|
|
C2C
|
A:HEM304
|
4.3
|
85.0
|
1.0
|
|
C2B
|
A:HEM304
|
4.3
|
86.8
|
1.0
|
|
C3B
|
A:HEM304
|
4.3
|
84.2
|
1.0
|
|
C3D
|
A:HEM304
|
4.3
|
92.1
|
1.0
|
|
C3C
|
A:HEM304
|
4.3
|
88.1
|
1.0
|
|
HHA
|
A:HEM304
|
4.4
|
0.1
|
1.0
|
|
HMAA
|
A:HEM303
|
4.4
|
68.2
|
1.0
|
|
HE1
|
B:PHE40
|
4.4
|
0.6
|
1.0
|
|
HHD
|
A:HEM304
|
4.4
|
95.3
|
1.0
|
|
HHB
|
A:HEM304
|
4.4
|
0.9
|
1.0
|
|
HHC
|
A:HEM304
|
4.5
|
0.4
|
1.0
|
|
H
|
A:GLY38
|
4.6
|
91.4
|
1.0
|
|
CE1
|
B:PHE40
|
4.6
|
0.6
|
1.0
|
|
O
|
A:TYR34
|
4.6
|
78.3
|
1.0
|
|
O2A
|
A:HEM303
|
4.6
|
78.4
|
1.0
|
|
CMA
|
A:HEM303
|
4.7
|
56.9
|
1.0
|
|
HAR1
|
B:TDS201
|
4.7
|
0.7
|
1.0
|
|
CA
|
A:GLY38
|
4.8
|
66.4
|
1.0
|
|
HA
|
A:CYS35
|
4.8
|
89.8
|
1.0
|
|
CAJ
|
B:TDS201
|
4.8
|
98.3
|
1.0
|
|
HE2
|
B:PHE40
|
4.8
|
0.3
|
1.0
|
|
HA2
|
A:GLY38
|
4.8
|
79.7
|
1.0
|
|
HAJ3
|
B:TDS201
|
4.9
|
0.9
|
1.0
|
|
CE2
|
B:PHE40
|
4.9
|
0.3
|
1.0
|
|
CAA
|
A:HEM303
|
4.9
|
64.4
|
1.0
|
|
N
|
A:GLY38
|
5.0
|
76.2
|
1.0
|
|
HBAA
|
A:HEM303
|
5.0
|
83.7
|
1.0
|
|
Iron binding site 4 out
of 6 in 4h13
Go back to
Iron Binding Sites List in 4h13
Iron binding site 4 out
of 6 in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe302
b:75.3
occ:1.00
|
FE
|
C:HEM302
|
0.0
|
75.3
|
1.0
|
|
H1
|
C:TYR1
|
1.8
|
0.2
|
1.0
|
|
NA
|
C:HEM302
|
2.0
|
76.5
|
1.0
|
|
NC
|
C:HEM302
|
2.0
|
79.6
|
1.0
|
|
NB
|
C:HEM302
|
2.0
|
84.0
|
1.0
|
|
ND
|
C:HEM302
|
2.1
|
99.7
|
1.0
|
|
NE2
|
C:HIS26
|
2.2
|
94.9
|
1.0
|
|
H2
|
C:TYR1
|
2.4
|
0.2
|
1.0
|
|
N
|
C:TYR1
|
2.5
|
92.6
|
1.0
|
|
C4C
|
C:HEM302
|
3.0
|
80.6
|
1.0
|
|
C1D
|
C:HEM302
|
3.0
|
97.4
|
1.0
|
|
C4A
|
C:HEM302
|
3.0
|
83.3
|
1.0
|
|
C1B
|
C:HEM302
|
3.0
|
82.4
|
1.0
|
|
C1A
|
C:HEM302
|
3.1
|
89.5
|
1.0
|
|
C1C
|
C:HEM302
|
3.1
|
82.9
|
1.0
|
|
C4B
|
C:HEM302
|
3.1
|
80.9
|
1.0
|
|
CE1
|
C:HIS26
|
3.1
|
91.8
|
1.0
|
|
C4D
|
C:HEM302
|
3.1
|
87.2
|
1.0
|
|
HA
|
C:TYR1
|
3.1
|
0.2
|
1.0
|
|
HE1
|
C:HIS26
|
3.2
|
0.2
|
1.0
|
|
H3
|
C:TYR1
|
3.2
|
0.2
|
1.0
|
|
CA
|
C:TYR1
|
3.3
|
86.9
|
1.0
|
|
CD2
|
C:HIS26
|
3.3
|
97.6
|
1.0
|
|
CHD
|
C:HEM302
|
3.3
|
90.0
|
1.0
|
|
CHB
|
C:HEM302
|
3.4
|
92.1
|
1.0
|
|
CHA
|
C:HEM302
|
3.5
|
75.0
|
1.0
|
|
CHC
|
C:HEM302
|
3.5
|
72.1
|
1.0
|
|
HD2
|
C:HIS26
|
3.6
|
0.2
|
1.0
|
|
HE3
|
C:TRP4
|
3.8
|
0.0
|
1.0
|
|
C
|
C:TYR1
|
4.0
|
82.1
|
1.0
|
|
C3C
|
C:HEM302
|
4.2
|
82.4
|
1.0
|
|
ND1
|
C:HIS26
|
4.3
|
95.9
|
1.0
|
|
C2C
|
C:HEM302
|
4.3
|
77.8
|
1.0
|
|
C3A
|
C:HEM302
|
4.3
|
95.0
|
1.0
|
|
C2B
|
C:HEM302
|
4.3
|
76.5
|
1.0
|
|
C2D
|
C:HEM302
|
4.3
|
0.8
|
1.0
|
|
C2A
|
C:HEM302
|
4.3
|
91.7
|
1.0
|
|
C3B
|
C:HEM302
|
4.3
|
86.4
|
1.0
|
|
HHD
|
C:HEM302
|
4.3
|
1.0
|
1.0
|
|
C3D
|
C:HEM302
|
4.3
|
96.2
|
1.0
|
|
O
|
C:TYR1
|
4.3
|
86.0
|
1.0
|
|
HHA
|
C:HEM302
|
4.4
|
89.9
|
1.0
|
|
HHB
|
C:HEM302
|
4.4
|
0.6
|
1.0
|
|
HHC
|
C:HEM302
|
4.4
|
86.5
|
1.0
|
|
CG
|
C:HIS26
|
4.4
|
0.4
|
1.0
|
|
CE3
|
C:TRP4
|
4.5
|
0.0
|
1.0
|
|
HB2
|
C:TRP4
|
4.6
|
1.0
|
1.0
|
|
CB
|
C:TYR1
|
4.6
|
0.8
|
1.0
|
|
HD3
|
C:PRO2
|
4.7
|
0.9
|
1.0
|
|
HA3
|
C:GLY158
|
4.7
|
0.0
|
1.0
|
|
HZ3
|
C:TRP4
|
4.7
|
0.8
|
1.0
|
|
CG
|
C:TYR1
|
4.8
|
0.9
|
1.0
|
|
N
|
C:PRO2
|
4.8
|
71.7
|
1.0
|
|
H
|
C:GLY158
|
4.8
|
0.5
|
1.0
|
|
HB2
|
C:CYS25
|
5.0
|
0.6
|
1.0
|
|
Iron binding site 5 out
of 6 in 4h13
Go back to
Iron Binding Sites List in 4h13
Iron binding site 5 out
of 6 in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:0.8
occ:1.00
|
FE1
|
D:FES202
|
0.0
|
0.8
|
1.0
|
|
SG
|
D:CYS126
|
2.0
|
0.4
|
1.0
|
|
SG
|
D:CYS108
|
2.1
|
84.7
|
1.0
|
|
S1
|
D:FES202
|
2.2
|
0.2
|
1.0
|
|
S2
|
D:FES202
|
2.2
|
80.3
|
1.0
|
|
HB3
|
D:CYS126
|
2.6
|
0.8
|
1.0
|
|
CB
|
D:CYS126
|
2.8
|
0.8
|
1.0
|
|
HB3
|
D:HIS110
|
2.9
|
97.9
|
1.0
|
|
FE2
|
D:FES202
|
3.1
|
95.8
|
1.0
|
|
HB2
|
D:CYS126
|
3.1
|
0.8
|
1.0
|
|
HB2
|
D:CYS128
|
3.5
|
0.9
|
1.0
|
|
HB3
|
D:SER131
|
3.6
|
0.9
|
1.0
|
|
CB
|
D:CYS108
|
3.7
|
97.2
|
1.0
|
|
CB
|
D:HIS110
|
3.8
|
81.6
|
1.0
|
|
HG
|
D:SER131
|
3.8
|
0.3
|
1.0
|
|
H
|
D:HIS129
|
3.8
|
0.0
|
1.0
|
|
H
|
D:LEU111
|
3.8
|
0.9
|
1.0
|
|
HB3
|
D:CYS108
|
3.9
|
0.7
|
1.0
|
|
HB2
|
D:CYS108
|
3.9
|
0.7
|
1.0
|
|
HB2
|
D:HIS110
|
3.9
|
97.9
|
1.0
|
|
H
|
D:SER131
|
3.9
|
0.1
|
1.0
|
|
HB2
|
D:CYS113
|
4.0
|
81.9
|
1.0
|
|
OG
|
D:SER131
|
4.0
|
0.6
|
1.0
|
|
ND1
|
D:HIS110
|
4.1
|
0.2
|
1.0
|
|
H
|
D:HIS110
|
4.1
|
0.8
|
1.0
|
|
CA
|
D:CYS126
|
4.2
|
0.1
|
1.0
|
|
CB
|
D:SER131
|
4.3
|
0.5
|
1.0
|
|
H
|
D:CYS113
|
4.3
|
0.7
|
1.0
|
|
H
|
D:GLY130
|
4.3
|
0.2
|
1.0
|
|
H
|
D:CYS128
|
4.3
|
0.8
|
1.0
|
|
HA
|
D:CYS126
|
4.4
|
0.9
|
1.0
|
|
CG
|
D:HIS110
|
4.4
|
74.8
|
1.0
|
|
CB
|
D:CYS128
|
4.4
|
0.7
|
1.0
|
|
HB2
|
D:ALA144
|
4.5
|
0.2
|
1.0
|
|
HB2
|
D:HIS129
|
4.5
|
0.7
|
1.0
|
|
H
|
D:GLY112
|
4.5
|
0.5
|
1.0
|
|
N
|
D:HIS129
|
4.6
|
0.0
|
1.0
|
|
N
|
D:LEU111
|
4.7
|
0.7
|
1.0
|
|
N
|
D:SER131
|
4.7
|
0.6
|
1.0
|
|
C
|
D:CYS126
|
4.8
|
0.4
|
1.0
|
|
N
|
D:HIS110
|
4.8
|
93.1
|
1.0
|
|
HG22
|
D:VAL115
|
4.8
|
0.3
|
1.0
|
|
ND1
|
D:HIS129
|
4.8
|
91.9
|
1.0
|
|
CA
|
D:HIS110
|
4.8
|
95.8
|
1.0
|
|
HB3
|
D:CYS128
|
4.9
|
0.9
|
1.0
|
|
CB
|
D:CYS113
|
4.9
|
68.3
|
1.0
|
|
HH
|
D:TYR133
|
4.9
|
0.7
|
1.0
|
|
CA
|
D:CYS108
|
4.9
|
98.0
|
1.0
|
|
HB2
|
D:SER131
|
5.0
|
0.9
|
1.0
|
|
Iron binding site 6 out
of 6 in 4h13
Go back to
Iron Binding Sites List in 4h13
Iron binding site 6 out
of 6 in the Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Cytochrome B6F Complex From Mastigocladus Laminosus with Tds within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe202
b:95.8
occ:1.00
|
FE2
|
D:FES202
|
0.0
|
95.8
|
1.0
|
|
ND1
|
D:HIS129
|
2.0
|
91.9
|
1.0
|
|
ND1
|
D:HIS110
|
2.2
|
0.2
|
1.0
|
|
S2
|
D:FES202
|
2.2
|
80.3
|
1.0
|
|
S1
|
D:FES202
|
2.2
|
0.2
|
1.0
|
|
HB2
|
D:HIS129
|
2.7
|
0.7
|
1.0
|
|
CE1
|
D:HIS110
|
2.9
|
98.3
|
1.0
|
|
CG
|
D:HIS129
|
2.9
|
99.3
|
1.0
|
|
HE1
|
D:HIS110
|
2.9
|
0.0
|
1.0
|
|
CE1
|
D:HIS129
|
3.0
|
0.2
|
1.0
|
|
FE1
|
D:FES202
|
3.1
|
0.8
|
1.0
|
|
HB2
|
D:CYS128
|
3.2
|
0.9
|
1.0
|
|
HE1
|
D:HIS129
|
3.2
|
0.4
|
1.0
|
|
CB
|
D:HIS129
|
3.2
|
0.6
|
1.0
|
|
HB3
|
D:HIS110
|
3.3
|
97.9
|
1.0
|
|
CG
|
D:HIS110
|
3.3
|
74.8
|
1.0
|
|
HB2
|
D:LEU111
|
3.3
|
0.1
|
1.0
|
|
H
|
D:HIS129
|
3.3
|
0.0
|
1.0
|
|
HB3
|
D:CYS128
|
3.6
|
0.9
|
1.0
|
|
N
|
D:HIS129
|
3.7
|
0.0
|
1.0
|
|
H
|
D:LEU111
|
3.7
|
0.9
|
1.0
|
|
CB
|
D:HIS110
|
3.8
|
81.6
|
1.0
|
|
CB
|
D:CYS128
|
3.8
|
0.7
|
1.0
|
|
HB3
|
D:HIS129
|
4.0
|
0.7
|
1.0
|
|
HD22
|
D:LEU111
|
4.0
|
98.6
|
1.0
|
|
CD2
|
D:HIS129
|
4.0
|
99.9
|
1.0
|
|
NE2
|
D:HIS129
|
4.0
|
0.4
|
1.0
|
|
NE2
|
D:HIS110
|
4.0
|
95.3
|
1.0
|
|
CA
|
D:HIS129
|
4.1
|
0.6
|
1.0
|
|
CB
|
D:LEU111
|
4.2
|
85.0
|
1.0
|
|
HB2
|
D:HIS110
|
4.2
|
97.9
|
1.0
|
|
CD2
|
D:HIS110
|
4.2
|
91.6
|
1.0
|
|
N
|
D:LEU111
|
4.3
|
0.7
|
1.0
|
|
C
|
D:CYS128
|
4.4
|
0.3
|
1.0
|
|
HD2
|
D:PRO143
|
4.5
|
0.4
|
1.0
|
|
HB3
|
D:LEU111
|
4.6
|
0.1
|
1.0
|
|
H
|
D:GLY130
|
4.6
|
0.2
|
1.0
|
|
HB3
|
D:CYS126
|
4.7
|
0.8
|
1.0
|
|
HD23
|
D:LEU111
|
4.7
|
98.6
|
1.0
|
|
CA
|
D:CYS128
|
4.7
|
0.9
|
1.0
|
|
CD2
|
D:LEU111
|
4.7
|
82.2
|
1.0
|
|
SG
|
D:CYS108
|
4.8
|
84.7
|
1.0
|
|
HE2
|
D:HIS110
|
4.8
|
0.3
|
1.0
|
|
HA
|
D:HIS129
|
4.8
|
0.1
|
1.0
|
|
HE2
|
D:HIS129
|
4.8
|
0.1
|
1.0
|
|
CA
|
D:LEU111
|
4.9
|
96.1
|
1.0
|
|
HD2
|
D:HIS129
|
4.9
|
0.8
|
1.0
|
|
SG
|
D:CYS126
|
4.9
|
0.4
|
1.0
|
|
C
|
D:HIS129
|
5.0
|
0.2
|
1.0
|
|
Reference:
S.S.Hasan,
E.Yamashita,
D.Baniulis,
W.A.Cramer.
Quinone-Dependent Proton Transfer Pathways in the Photosynthetic Cytochrome B6F Complex Proc.Natl.Acad.Sci.Usa V. 110 4297 2013.
ISSN: ISSN 0027-8424
PubMed: 23440205
DOI: 10.1073/PNAS.1222248110
Page generated: Mon Aug 5 03:07:30 2024
|
