Iron in PDB 4igo: Histone H3 Lysine 4 Demethylating Rice Rice JMJ703 in Complex with Alpha-Kg

The structure of Histone H3 Lysine 4 Demethylating Rice Rice JMJ703 in Complex with Alpha-Kg, PDB code: 4igo was solved by Q.F.Chen, X.S.Chen, Q.Wang, F.B.Zhang, Z.Y.Lou, Q.F.Zhang, D.X.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	38.89 / 2.40
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	90.518, 90.518, 76.048, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 23

The binding sites of Iron atom in the Histone H3 Lysine 4 Demethylating Rice Rice JMJ703 in Complex with Alpha-Kg (pdb code 4igo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Histone H3 Lysine 4 Demethylating Rice Rice JMJ703 in Complex with Alpha-Kg, PDB code: 4igo:

Iron binding site 1 out of 1 in the Histone H3 Lysine 4 Demethylating Rice Rice JMJ703 in Complex with Alpha-Kg


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Histone H3 Lysine 4 Demethylating Rice Rice JMJ703 in Complex with Alpha-Kg within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1000 b:52.1 occ:1.00 OE2 A:GLU396 1.9 59.4 1.0 O2 A:AKG1001 2.1 61.8 1.0 O5 A:AKG1001 2.1 69.2 1.0 NE2 A:HIS482 2.1 50.3 1.0 NE2 A:HIS394 2.2 61.1 1.0 C2 A:AKG1001 2.3 70.7 1.0 C1 A:AKG1001 2.5 67.5 1.0 CE1 A:HIS394 2.8 60.1 1.0 CD2 A:HIS482 3.1 45.4 1.0 CD A:GLU396 3.1 62.7 1.0 CE1 A:HIS482 3.1 48.6 1.0 C3 A:AKG1001 3.4 72.2 1.0 CD2 A:HIS394 3.4 55.1 1.0 OE1 A:GLU396 3.7 65.7 1.0 O1 A:AKG1001 3.7 67.7 1.0 ND1 A:HIS394 4.0 59.9 1.0 ND1 A:HIS482 4.2 49.1 1.0 CG A:HIS482 4.3 48.3 1.0 CG A:GLU396 4.3 60.8 1.0 CG A:HIS394 4.3 54.5 1.0 OG A:SER402 4.6 58.3 1.0 C4 A:AKG1001 4.7 75.7 1.0

Q.Chen, X.Chen, Q.Wang, F.Zhang, Z.Lou, Q.Zhang, D.X.Zhou. Structural Basis of A Histone H3 Lysine 4 Demethylase Required For Stem Elongation in Rice. Plos Genet. V. 9 03239 2013.
ISSN: ISSN 1553-7390
PubMed: 23357881
DOI: 10.1371/JOURNAL.PGEN.1003239