Iron in PDB 4jj0: Crystal Structure of Mamp

The structure of Crystal Structure of Mamp, PDB code: 4jj0 was solved by M.Siponen, D.Pignol, P.Arnoux, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.03 / 1.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	81.240, 95.810, 54.320, 90.00, 115.33, 90.00
R / Rfree (%)	18.2 / 23.9

The binding sites of Iron atom in the Crystal Structure of Mamp (pdb code 4jj0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Mamp, PDB code: 4jj0:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Mamp


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Mamp within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:16.9 occ:1.00 FE A:HEC501 0.0 16.9 1.0 NE2 A:HIS256 1.9 18.8 1.0 NA A:HEC501 2.0 16.6 1.0 ND A:HEC501 2.1 14.9 1.0 NE2 A:HIS246 2.1 17.1 1.0 NB A:HEC501 2.1 14.7 1.0 NC A:HEC501 2.1 15.4 1.0 CE1 A:HIS256 2.9 17.7 1.0 CD2 A:HIS256 3.0 18.4 1.0 C1B A:HEC501 3.0 16.6 1.0 CD2 A:HIS246 3.0 17.1 1.0 C4C A:HEC501 3.0 15.9 1.0 C4A A:HEC501 3.0 17.9 1.0 C1D A:HEC501 3.0 16.7 1.0 C1A A:HEC501 3.0 18.9 1.0 C4B A:HEC501 3.1 16.3 1.0 C1C A:HEC501 3.1 15.3 1.0 C4D A:HEC501 3.1 17.9 1.0 CE1 A:HIS246 3.1 15.2 1.0 CHD A:HEC501 3.4 15.7 1.0 CHB A:HEC501 3.4 16.9 1.0 CHA A:HEC501 3.4 17.7 1.0 CHC A:HEC501 3.5 14.3 1.0 ND1 A:HIS256 4.0 18.6 1.0 CG A:HIS256 4.1 19.3 1.0 ND1 A:HIS246 4.2 16.5 1.0 CG A:HIS246 4.2 16.8 1.0 C3C A:HEC501 4.3 15.6 1.0 C2B A:HEC501 4.3 15.3 1.0 C2A A:HEC501 4.3 20.3 1.0 C3B A:HEC501 4.3 14.6 1.0 C2C A:HEC501 4.3 15.8 1.0 C3A A:HEC501 4.4 17.1 1.0 C2D A:HEC501 4.4 16.6 1.0 C3D A:HEC501 4.4 16.9 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Mamp


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Mamp within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:13.4 occ:1.00 FE A:HEC502 0.0 13.4 1.0 NC A:HEC502 2.0 11.9 1.0 NE2 A:HIS206 2.0 13.6 1.0 NA A:HEC502 2.0 13.1 1.0 NE2 A:HIS216 2.0 14.3 1.0 NB A:HEC502 2.0 11.7 1.0 ND A:HEC502 2.1 13.0 1.0 CE1 A:HIS216 3.0 14.6 1.0 CD2 A:HIS206 3.0 15.0 1.0 C4C A:HEC502 3.0 14.1 1.0 C4A A:HEC502 3.0 13.8 1.0 C4B A:HEC502 3.0 13.8 1.0 CE1 A:HIS206 3.0 13.6 1.0 C1C A:HEC502 3.0 13.1 1.0 CD2 A:HIS216 3.0 15.4 1.0 C4D A:HEC502 3.1 14.6 1.0 C1A A:HEC502 3.1 14.4 1.0 C1D A:HEC502 3.1 14.5 1.0 C1B A:HEC502 3.1 13.0 1.0 CHC A:HEC502 3.4 12.6 1.0 CHB A:HEC502 3.4 12.8 1.0 CHD A:HEC502 3.5 12.6 1.0 CHA A:HEC502 3.5 14.0 1.0 ND1 A:HIS216 4.1 15.3 1.0 ND1 A:HIS206 4.2 15.3 1.0 CG A:HIS206 4.2 14.6 1.0 CG A:HIS216 4.2 15.5 1.0 C3C A:HEC502 4.2 16.0 1.0 C3A A:HEC502 4.3 14.5 1.0 C2C A:HEC502 4.3 14.2 1.0 C3B A:HEC502 4.3 12.0 1.0 C2A A:HEC502 4.4 14.8 1.0 C2B A:HEC502 4.4 12.1 1.0 C3D A:HEC502 4.4 17.1 1.0 C2D A:HEC502 4.4 16.1 1.0 NH1 A:ARG209 4.9 16.5 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Mamp


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Mamp within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe501 b:15.6 occ:1.00 FE B:HEC501 0.0 15.6 1.0 NE2 B:HIS256 1.9 17.6 1.0 NE2 B:HIS246 2.0 14.1 1.0 NB B:HEC501 2.0 13.9 1.0 NC B:HEC501 2.1 14.3 1.0 NA B:HEC501 2.1 16.9 1.0 ND B:HEC501 2.1 16.0 1.0 CE1 B:HIS256 2.9 19.1 1.0 CD2 B:HIS256 3.0 18.5 1.0 CE1 B:HIS246 3.0 15.3 1.0 C4B B:HEC501 3.0 14.0 1.0 C4C B:HEC501 3.0 14.5 1.0 CD2 B:HIS246 3.0 17.9 1.0 C1B B:HEC501 3.0 17.1 1.0 C1C B:HEC501 3.1 13.9 1.0 C1A B:HEC501 3.1 19.4 1.0 C1D B:HEC501 3.1 14.9 1.0 C4A B:HEC501 3.1 18.3 1.0 C4D B:HEC501 3.1 18.5 1.0 CHC B:HEC501 3.4 12.3 1.0 CHD B:HEC501 3.4 14.3 1.0 CHB B:HEC501 3.4 15.1 1.0 CHA B:HEC501 3.5 18.0 1.0 ND1 B:HIS256 4.1 17.8 1.0 CG B:HIS256 4.1 18.7 1.0 ND1 B:HIS246 4.1 15.4 1.0 CG B:HIS246 4.2 16.9 1.0 C3B B:HEC501 4.3 14.6 1.0 C3C B:HEC501 4.3 14.8 1.0 C2B B:HEC501 4.4 14.6 1.0 C2C B:HEC501 4.4 13.7 1.0 C2A B:HEC501 4.4 21.0 1.0 C2D B:HEC501 4.4 17.0 1.0 C3A B:HEC501 4.4 20.0 1.0 C3D B:HEC501 4.5 18.5 1.0 NH1 B:ARG249 4.9 27.4 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Mamp


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Mamp within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe502 b:13.8 occ:1.00 FE B:HEC502 0.0 13.8 1.0 NE2 B:HIS216 2.0 11.1 1.0 NA B:HEC502 2.0 12.2 1.0 NB B:HEC502 2.0 12.2 1.0 NC B:HEC502 2.0 13.6 1.0 NE2 B:HIS206 2.0 13.9 1.0 ND B:HEC502 2.1 13.6 1.0 CE1 B:HIS216 2.9 11.6 1.0 CE1 B:HIS206 2.9 14.0 1.0 C4B B:HEC502 3.0 12.2 1.0 C1B B:HEC502 3.0 10.9 1.0 C1A B:HEC502 3.0 13.2 1.0 C4D B:HEC502 3.0 15.1 1.0 C1D B:HEC502 3.1 14.3 1.0 C4C B:HEC502 3.1 13.1 1.0 C1C B:HEC502 3.1 12.6 1.0 C4A B:HEC502 3.1 11.9 1.0 CD2 B:HIS216 3.1 12.5 1.0 CD2 B:HIS206 3.1 15.1 1.0 CHA B:HEC502 3.3 12.5 1.0 CHB B:HEC502 3.4 11.1 1.0 CHD B:HEC502 3.5 13.3 1.0 CHC B:HEC502 3.5 11.3 1.0 ND1 B:HIS216 4.1 12.2 1.0 ND1 B:HIS206 4.1 14.7 1.0 CG B:HIS216 4.2 13.0 1.0 C3B B:HEC502 4.2 11.3 1.0 CG B:HIS206 4.3 15.0 1.0 C2B B:HEC502 4.3 11.0 1.0 C2A B:HEC502 4.3 12.8 1.0 C3D B:HEC502 4.3 15.6 1.0 C2D B:HEC502 4.4 16.8 1.0 C3C B:HEC502 4.4 13.2 1.0 C3A B:HEC502 4.4 12.4 1.0 C2C B:HEC502 4.4 12.6 1.0 NH1 B:ARG209 4.9 14.9 1.0 CG B:MET204 5.0 23.2 1.0

M.I.Siponen, P.Legrand, M.Widdrat, S.R.Jones, W.J.Zhang, M.C.Chang, D.Faivre, P.Arnoux, D.Pignol. Structural Insight Into Magnetochrome-Mediated Magnetite Biomineralization. Nature V. 502 681 2013.
ISSN: ISSN 0028-0836
PubMed: 24097349
DOI: 10.1038/NATURE12573