Atomistry » Iron » PDB 4kib-4kx6 » 4kpa
Atomistry »
  Iron »
    PDB 4kib-4kx6 »
      4kpa »

Iron in PDB 4kpa: Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg)

Enzymatic activity of Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg)

All present enzymatic activity of Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg):
1.14.14.1;

Protein crystallography data

The structure of Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg), PDB code: 4kpa was solved by G.A.Amadeo, J.Catalano, A.E.Mcdermott, L.Tong, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.66 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 188.700, 59.320, 56.240, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 23

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg) (pdb code 4kpa). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg), PDB code: 4kpa:

Iron binding site 1 out of 1 in 4kpa

Go back to Iron Binding Sites List in 4kpa
Iron binding site 1 out of 1 in the Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Cytochrome P450 Bm-3 in Complex with N- Palmitoylglycine (Npg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:13.0
occ:1.00
FE A:HEM501 0.0 13.0 1.0
NA A:HEM501 2.0 12.3 1.0
NC A:HEM501 2.0 11.5 1.0
ND A:HEM501 2.0 13.8 1.0
NB A:HEM501 2.0 13.3 1.0
SG A:CYS400 2.4 15.9 1.0
C4C A:HEM501 3.0 10.1 1.0
C1D A:HEM501 3.0 9.8 1.0
C1C A:HEM501 3.0 11.4 1.0
C4D A:HEM501 3.0 11.9 1.0
C1A A:HEM501 3.1 13.0 1.0
C4A A:HEM501 3.1 12.6 1.0
C4B A:HEM501 3.1 12.5 1.0
C1B A:HEM501 3.1 14.5 1.0
O A:HOH642 3.2 20.2 1.0
CB A:CYS400 3.3 13.5 1.0
CHD A:HEM501 3.4 8.6 1.0
CHB A:HEM501 3.4 10.4 1.0
CHC A:HEM501 3.4 10.5 1.0
CHA A:HEM501 3.4 10.0 1.0
CA A:CYS400 4.0 13.8 1.0
C3A A:HEM501 4.3 13.9 1.0
C2A A:HEM501 4.3 12.9 1.0
C2C A:HEM501 4.3 14.5 1.0
C3C A:HEM501 4.3 12.6 1.0
C3D A:HEM501 4.3 11.6 1.0
C2D A:HEM501 4.3 11.5 1.0
C2B A:HEM501 4.4 16.6 1.0
C3B A:HEM501 4.4 15.5 1.0
CE2 A:PHE87 4.5 15.5 1.0
O A:ALA264 4.7 10.6 1.0
C A:CYS400 4.7 12.7 1.0
N A:ILE401 4.8 14.3 1.0
N A:GLY402 4.8 13.3 1.0

Reference:

J.Catalano, K.Sadre-Bazzaz, G.A.Amodeo, L.Tong, A.Mcdermott. Structural Evidence: A Single Charged Residue Affects Substrate Binding in Cytochrome P450 Bm-3. Biochemistry V. 52 6807 2013.
ISSN: ISSN 0006-2960
PubMed: 23829560
DOI: 10.1021/BI4000645
Page generated: Sun Dec 13 15:40:06 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy