Iron in PDB 4l77: P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility
Protein crystallography data
The structure of P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility, PDB code: 4l77
was solved by
Y.Madrona,
T.L.Poulos,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
43.79 /
1.38
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
64.397,
68.097,
103.663,
90.00,
96.12,
90.00
|
R / Rfree (%)
|
14.2 /
17.8
|
Iron Binding Sites:
The binding sites of Iron atom in the P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility
(pdb code 4l77). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility, PDB code: 4l77:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 4l77
Go back to
Iron Binding Sites List in 4l77
Iron binding site 1 out
of 2 in the P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:11.7
occ:1.00
|
FE
|
A:HEM501
|
0.0
|
11.7
|
1.0
|
NC
|
A:HEM501
|
2.0
|
10.6
|
1.0
|
ND
|
A:HEM501
|
2.0
|
10.8
|
1.0
|
NB
|
A:HEM501
|
2.0
|
9.3
|
1.0
|
NA
|
A:HEM501
|
2.0
|
8.9
|
1.0
|
O
|
A:HOH1104
|
2.5
|
29.6
|
0.4
|
SG
|
A:CYS347
|
2.6
|
14.3
|
1.0
|
C1C
|
A:HEM501
|
3.0
|
10.6
|
1.0
|
C4B
|
A:HEM501
|
3.0
|
11.3
|
1.0
|
C1B
|
A:HEM501
|
3.0
|
7.5
|
1.0
|
C4D
|
A:HEM501
|
3.0
|
9.8
|
1.0
|
C1D
|
A:HEM501
|
3.0
|
12.2
|
1.0
|
C4C
|
A:HEM501
|
3.1
|
12.0
|
1.0
|
C1A
|
A:HEM501
|
3.1
|
9.2
|
1.0
|
C4A
|
A:HEM501
|
3.1
|
7.9
|
1.0
|
CHC
|
A:HEM501
|
3.4
|
12.8
|
1.0
|
CHD
|
A:HEM501
|
3.4
|
12.0
|
1.0
|
CHA
|
A:HEM501
|
3.4
|
9.7
|
1.0
|
CHB
|
A:HEM501
|
3.5
|
9.2
|
1.0
|
CB
|
A:CYS347
|
3.5
|
11.3
|
1.0
|
O
|
A:HOH1104
|
3.8
|
29.5
|
0.6
|
CA
|
A:CYS347
|
4.0
|
9.4
|
1.0
|
C3B
|
A:HEM501
|
4.2
|
10.2
|
1.0
|
C2C
|
A:HEM501
|
4.2
|
11.5
|
1.0
|
C3C
|
A:HEM501
|
4.2
|
12.9
|
1.0
|
C2B
|
A:HEM501
|
4.3
|
9.5
|
1.0
|
C2D
|
A:HEM501
|
4.3
|
11.9
|
1.0
|
C3D
|
A:HEM501
|
4.3
|
11.0
|
1.0
|
C3A
|
A:HEM501
|
4.3
|
8.8
|
1.0
|
C2A
|
A:HEM501
|
4.3
|
8.8
|
1.0
|
N
|
A:LEU348
|
4.5
|
11.5
|
1.0
|
N
|
A:GLY349
|
4.6
|
12.7
|
1.0
|
C
|
A:CYS347
|
4.6
|
11.1
|
1.0
|
C2
|
A:CNL502
|
4.7
|
24.2
|
1.0
|
C7
|
A:CNL502
|
4.9
|
25.8
|
1.0
|
|
Iron binding site 2 out
of 2 in 4l77
Go back to
Iron Binding Sites List in 4l77
Iron binding site 2 out
of 2 in the P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe501
b:9.3
occ:1.00
|
FE
|
B:HEM501
|
0.0
|
9.3
|
1.0
|
NB
|
B:HEM501
|
2.0
|
7.1
|
1.0
|
NC
|
B:HEM501
|
2.0
|
9.1
|
1.0
|
NA
|
B:HEM501
|
2.0
|
8.0
|
1.0
|
ND
|
B:HEM501
|
2.0
|
8.4
|
1.0
|
SG
|
B:CYS347
|
2.5
|
11.3
|
1.0
|
O
|
B:HOH838
|
2.5
|
15.7
|
0.6
|
C4B
|
B:HEM501
|
3.0
|
8.1
|
1.0
|
C1B
|
B:HEM501
|
3.0
|
7.1
|
1.0
|
C1C
|
B:HEM501
|
3.0
|
9.7
|
1.0
|
C4D
|
B:HEM501
|
3.1
|
7.9
|
1.0
|
C1D
|
B:HEM501
|
3.1
|
8.7
|
1.0
|
C4A
|
B:HEM501
|
3.1
|
7.0
|
1.0
|
C1A
|
B:HEM501
|
3.1
|
7.1
|
1.0
|
C4C
|
B:HEM501
|
3.1
|
9.1
|
1.0
|
CHC
|
B:HEM501
|
3.4
|
9.5
|
1.0
|
CHB
|
B:HEM501
|
3.4
|
7.1
|
1.0
|
CHA
|
B:HEM501
|
3.4
|
7.0
|
1.0
|
CHD
|
B:HEM501
|
3.4
|
8.6
|
1.0
|
CB
|
B:CYS347
|
3.5
|
8.6
|
1.0
|
O
|
B:HOH838
|
3.5
|
17.0
|
0.4
|
CA
|
B:CYS347
|
4.0
|
7.5
|
1.0
|
C2B
|
B:HEM501
|
4.2
|
7.9
|
1.0
|
C3B
|
B:HEM501
|
4.3
|
7.6
|
1.0
|
C2C
|
B:HEM501
|
4.3
|
9.7
|
1.0
|
C3D
|
B:HEM501
|
4.3
|
8.2
|
1.0
|
C3A
|
B:HEM501
|
4.3
|
7.8
|
1.0
|
C3C
|
B:HEM501
|
4.3
|
10.6
|
1.0
|
C2D
|
B:HEM501
|
4.3
|
8.8
|
1.0
|
C2A
|
B:HEM501
|
4.3
|
7.3
|
1.0
|
N
|
B:LEU348
|
4.6
|
8.1
|
1.0
|
C
|
B:CYS347
|
4.7
|
8.4
|
1.0
|
N
|
B:GLY349
|
4.7
|
8.3
|
1.0
|
C2
|
B:CNL502
|
4.7
|
21.3
|
1.0
|
C7
|
B:CNL502
|
4.9
|
22.6
|
1.0
|
|
Reference:
Y.Madrona,
S.A.Hollingsworth,
B.Khan,
T.L.Poulos.
P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility. Biochemistry V. 52 5039 2013.
ISSN: ISSN 0006-2960
PubMed: 23829586
DOI: 10.1021/BI4006946
Page generated: Sun Dec 13 15:40:54 2020
|