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Iron in PDB 4lht: Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole

Protein crystallography data

The structure of Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole, PDB code: 4lht was solved by Y.Madrona, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.88 / 2.14
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 68.460, 103.709, 127.590, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 26.3

Other elements in 4lht:

The structure of Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole (pdb code 4lht). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole, PDB code: 4lht:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4lht

Go back to Iron Binding Sites List in 4lht
Iron binding site 1 out of 2 in the Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:24.8
occ:1.00
FE A:HEM501 0.0 24.8 1.0
NB A:HEM501 2.1 23.1 1.0
NC A:HEM501 2.1 20.3 1.0
NA A:HEM501 2.1 21.6 1.0
ND A:HEM501 2.2 24.7 1.0
SG A:CYS347 2.5 16.8 1.0
C1B A:HEM501 3.1 23.0 1.0
C4B A:HEM501 3.1 21.8 1.0
C4A A:HEM501 3.1 21.5 1.0
C1C A:HEM501 3.1 23.6 1.0
C4C A:HEM501 3.1 23.1 1.0
C1D A:HEM501 3.1 27.2 1.0
C1A A:HEM501 3.1 20.2 1.0
C4D A:HEM501 3.2 24.9 1.0
CB A:CYS347 3.4 12.5 1.0
CHB A:HEM501 3.4 18.8 1.0
CHC A:HEM501 3.4 19.7 1.0
CHD A:HEM501 3.5 26.4 1.0
CHA A:HEM501 3.5 22.1 1.0
CA A:CYS347 3.9 15.7 1.0
C2B A:HEM501 4.3 24.0 1.0
C3B A:HEM501 4.3 24.6 1.0
C3A A:HEM501 4.3 19.3 1.0
C3C A:HEM501 4.3 22.9 1.0
C2C A:HEM501 4.3 24.6 1.0
C2A A:HEM501 4.3 19.7 1.0
C2D A:HEM501 4.4 25.6 1.0
C3D A:HEM501 4.4 23.3 1.0
C2 A:CNL502 4.4 21.6 0.6
N A:LEU348 4.5 19.8 1.0
ND2 A:ASN242 4.5 21.9 1.0
C A:CYS347 4.6 16.2 1.0
N A:GLY349 4.6 19.6 1.0
C7 A:CNL502 4.9 23.7 1.0

Iron binding site 2 out of 2 in 4lht

Go back to Iron Binding Sites List in 4lht
Iron binding site 2 out of 2 in the Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of P450CIN Y81F Mutant, Crystallized in 3 Mm 1,8- Cineole within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:23.9
occ:1.00
FE B:HEM501 0.0 23.9 1.0
NA B:HEM501 2.1 19.8 1.0
NB B:HEM501 2.1 19.8 1.0
NC B:HEM501 2.1 22.6 1.0
ND B:HEM501 2.2 17.3 1.0
SG B:CYS347 2.4 15.2 1.0
C4A B:HEM501 3.1 20.8 1.0
C1B B:HEM501 3.1 17.7 1.0
C1A B:HEM501 3.1 19.7 1.0
C4C B:HEM501 3.1 22.9 1.0
C4B B:HEM501 3.1 20.1 1.0
C4D B:HEM501 3.1 20.7 1.0
C1C B:HEM501 3.1 22.3 1.0
C1D B:HEM501 3.2 20.9 1.0
CB B:CYS347 3.3 17.8 1.0
CHB B:HEM501 3.4 15.1 1.0
CHA B:HEM501 3.4 20.1 1.0
CHC B:HEM501 3.5 18.7 1.0
CHD B:HEM501 3.5 22.1 1.0
CA B:CYS347 3.9 20.3 1.0
C2 B:CNL502 4.2 32.8 0.8
C3A B:HEM501 4.3 18.9 1.0
C2B B:HEM501 4.3 20.6 1.0
C2A B:HEM501 4.3 20.8 1.0
C3B B:HEM501 4.3 21.7 1.0
C3C B:HEM501 4.3 19.9 1.0
C2C B:HEM501 4.3 18.6 1.0
C3D B:HEM501 4.4 22.9 1.0
C2D B:HEM501 4.4 25.0 1.0
N B:LEU348 4.5 22.9 1.0
C B:CYS347 4.5 22.2 1.0
ND2 B:ASN242 4.6 19.6 1.0
N B:GLY349 4.6 20.6 1.0
C7 B:CNL502 4.7 34.9 1.0
C1 B:CNL502 4.9 31.6 0.7
O B:CNL502 5.0 28.0 1.0

Reference:

Y.Madrona, S.A.Hollingsworth, B.Khan, T.L.Poulos. P450CIN Active Site Water: Implications For Substrate Binding and Solvent Accessibility. Biochemistry V. 52 5039 2013.
ISSN: ISSN 0006-2960
PubMed: 23829586
DOI: 10.1021/BI4006946
Page generated: Mon Aug 5 06:11:27 2024

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