Iron in PDB 4lm8: Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
Protein crystallography data
The structure of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc, PDB code: 4lm8
was solved by
T.A.Clarke,
M.J.Edwards,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
45.80 /
1.80
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
53.120,
90.440,
154.340,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
16.6 /
20.3
|
Other elements in 4lm8:
The structure of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
(pdb code 4lm8). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc, PDB code: 4lm8:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 1 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe801
b:9.3
occ:1.00
|
FE
|
A:HEC801
|
0.0
|
9.3
|
1.0
|
|
NC
|
A:HEC801
|
2.0
|
7.3
|
1.0
|
|
NB
|
A:HEC801
|
2.0
|
7.3
|
1.0
|
|
NE2
|
A:HIS190
|
2.0
|
8.4
|
1.0
|
|
NA
|
A:HEC801
|
2.0
|
10.4
|
1.0
|
|
ND
|
A:HEC801
|
2.1
|
9.7
|
1.0
|
|
NE2
|
A:HIS233
|
2.1
|
7.8
|
1.0
|
|
CE1
|
A:HIS190
|
3.0
|
8.5
|
1.0
|
|
CE1
|
A:HIS233
|
3.0
|
11.4
|
1.0
|
|
C4B
|
A:HEC801
|
3.1
|
7.5
|
1.0
|
|
C1B
|
A:HEC801
|
3.1
|
7.2
|
1.0
|
|
CD2
|
A:HIS190
|
3.1
|
5.4
|
1.0
|
|
C4C
|
A:HEC801
|
3.1
|
8.7
|
1.0
|
|
C1C
|
A:HEC801
|
3.1
|
10.0
|
1.0
|
|
C4D
|
A:HEC801
|
3.1
|
8.6
|
1.0
|
|
C4A
|
A:HEC801
|
3.1
|
7.6
|
1.0
|
|
C1D
|
A:HEC801
|
3.1
|
9.1
|
1.0
|
|
C1A
|
A:HEC801
|
3.1
|
9.6
|
1.0
|
|
CD2
|
A:HIS233
|
3.1
|
6.3
|
1.0
|
|
CHD
|
A:HEC801
|
3.4
|
6.6
|
1.0
|
|
CHB
|
A:HEC801
|
3.4
|
5.5
|
1.0
|
|
CHC
|
A:HEC801
|
3.5
|
7.3
|
1.0
|
|
CHA
|
A:HEC801
|
3.5
|
9.4
|
1.0
|
|
ND1
|
A:HIS190
|
4.1
|
10.6
|
1.0
|
|
ND1
|
A:HIS233
|
4.1
|
7.7
|
1.0
|
|
CG
|
A:HIS190
|
4.2
|
8.2
|
1.0
|
|
CG
|
A:HIS233
|
4.2
|
8.2
|
1.0
|
|
C3B
|
A:HEC801
|
4.3
|
7.7
|
1.0
|
|
C2B
|
A:HEC801
|
4.3
|
7.6
|
1.0
|
|
C2C
|
A:HEC801
|
4.3
|
10.6
|
1.0
|
|
C3C
|
A:HEC801
|
4.3
|
10.6
|
1.0
|
|
C3A
|
A:HEC801
|
4.3
|
8.4
|
1.0
|
|
C3D
|
A:HEC801
|
4.3
|
8.6
|
1.0
|
|
C2A
|
A:HEC801
|
4.3
|
8.2
|
1.0
|
|
C2D
|
A:HEC801
|
4.3
|
11.2
|
1.0
|
|
Iron binding site 2 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 2 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe802
b:8.9
occ:1.00
|
FE
|
A:HEC802
|
0.0
|
8.9
|
1.0
|
|
NA
|
A:HEC802
|
2.0
|
8.3
|
1.0
|
|
NB
|
A:HEC802
|
2.0
|
9.0
|
1.0
|
|
NE2
|
A:HIS210
|
2.0
|
7.8
|
1.0
|
|
ND
|
A:HEC802
|
2.1
|
7.5
|
1.0
|
|
NC
|
A:HEC802
|
2.1
|
9.0
|
1.0
|
|
NE2
|
A:HIS198
|
2.1
|
6.4
|
1.0
|
|
CE1
|
A:HIS210
|
2.9
|
9.8
|
1.0
|
|
CE1
|
A:HIS198
|
3.0
|
17.7
|
1.0
|
|
C1A
|
A:HEC802
|
3.0
|
8.8
|
1.0
|
|
C4B
|
A:HEC802
|
3.1
|
9.3
|
1.0
|
|
C4D
|
A:HEC802
|
3.1
|
9.4
|
1.0
|
|
C4A
|
A:HEC802
|
3.1
|
8.4
|
1.0
|
|
C1B
|
A:HEC802
|
3.1
|
7.2
|
1.0
|
|
C1C
|
A:HEC802
|
3.1
|
8.7
|
1.0
|
|
C1D
|
A:HEC802
|
3.1
|
8.5
|
1.0
|
|
C4C
|
A:HEC802
|
3.1
|
7.2
|
1.0
|
|
CD2
|
A:HIS210
|
3.1
|
8.6
|
1.0
|
|
CD2
|
A:HIS198
|
3.2
|
8.2
|
1.0
|
|
CHA
|
A:HEC802
|
3.4
|
14.7
|
1.0
|
|
CHC
|
A:HEC802
|
3.4
|
6.4
|
1.0
|
|
CHB
|
A:HEC802
|
3.4
|
4.3
|
1.0
|
|
CHD
|
A:HEC802
|
3.5
|
5.7
|
1.0
|
|
ND1
|
A:HIS210
|
4.1
|
7.8
|
1.0
|
|
ND1
|
A:HIS198
|
4.2
|
11.4
|
1.0
|
|
CG
|
A:HIS210
|
4.2
|
5.7
|
1.0
|
|
C2A
|
A:HEC802
|
4.3
|
7.5
|
1.0
|
|
C3A
|
A:HEC802
|
4.3
|
9.8
|
1.0
|
|
C2B
|
A:HEC802
|
4.3
|
8.1
|
1.0
|
|
C3B
|
A:HEC802
|
4.3
|
8.1
|
1.0
|
|
CG
|
A:HIS198
|
4.3
|
11.1
|
1.0
|
|
C2C
|
A:HEC802
|
4.3
|
7.8
|
1.0
|
|
C3D
|
A:HEC802
|
4.3
|
8.4
|
1.0
|
|
C2D
|
A:HEC802
|
4.3
|
11.8
|
1.0
|
|
C3C
|
A:HEC802
|
4.3
|
10.2
|
1.0
|
|
CG
|
A:GLN199
|
4.9
|
14.5
|
1.0
|
|
Iron binding site 3 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 3 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe803
b:8.6
occ:1.00
|
FE
|
A:HEC803
|
0.0
|
8.6
|
1.0
|
|
NE2
|
A:HIS230
|
2.0
|
6.6
|
1.0
|
|
NE2
|
A:HIS261
|
2.0
|
8.2
|
1.0
|
|
NC
|
A:HEC803
|
2.0
|
8.0
|
1.0
|
|
NB
|
A:HEC803
|
2.1
|
9.4
|
1.0
|
|
NA
|
A:HEC803
|
2.1
|
8.3
|
1.0
|
|
ND
|
A:HEC803
|
2.1
|
8.3
|
1.0
|
|
CE1
|
A:HIS230
|
2.9
|
5.3
|
1.0
|
|
CE1
|
A:HIS261
|
3.0
|
8.0
|
1.0
|
|
CD2
|
A:HIS261
|
3.0
|
8.9
|
1.0
|
|
CD2
|
A:HIS230
|
3.0
|
8.8
|
1.0
|
|
C4C
|
A:HEC803
|
3.0
|
8.9
|
1.0
|
|
C1C
|
A:HEC803
|
3.1
|
9.0
|
1.0
|
|
C4A
|
A:HEC803
|
3.1
|
6.7
|
1.0
|
|
C1D
|
A:HEC803
|
3.1
|
6.9
|
1.0
|
|
C1B
|
A:HEC803
|
3.1
|
6.7
|
1.0
|
|
C4B
|
A:HEC803
|
3.1
|
10.7
|
1.0
|
|
C1A
|
A:HEC803
|
3.1
|
6.8
|
1.0
|
|
C4D
|
A:HEC803
|
3.1
|
6.0
|
1.0
|
|
CHD
|
A:HEC803
|
3.4
|
8.2
|
1.0
|
|
CHB
|
A:HEC803
|
3.4
|
7.4
|
1.0
|
|
CHC
|
A:HEC803
|
3.5
|
8.9
|
1.0
|
|
CHA
|
A:HEC803
|
3.5
|
5.5
|
1.0
|
|
ND1
|
A:HIS230
|
4.1
|
8.0
|
1.0
|
|
ND1
|
A:HIS261
|
4.1
|
7.0
|
1.0
|
|
CG
|
A:HIS230
|
4.1
|
7.5
|
1.0
|
|
CG
|
A:HIS261
|
4.2
|
8.4
|
1.0
|
|
C3C
|
A:HEC803
|
4.3
|
9.0
|
1.0
|
|
C2C
|
A:HEC803
|
4.3
|
9.9
|
1.0
|
|
C2B
|
A:HEC803
|
4.3
|
9.6
|
1.0
|
|
C3A
|
A:HEC803
|
4.3
|
5.7
|
1.0
|
|
C3B
|
A:HEC803
|
4.3
|
7.2
|
1.0
|
|
C2A
|
A:HEC803
|
4.3
|
5.6
|
1.0
|
|
C2D
|
A:HEC803
|
4.3
|
6.6
|
1.0
|
|
C3D
|
A:HEC803
|
4.4
|
8.1
|
1.0
|
|
CB
|
A:TRP273
|
4.9
|
8.3
|
1.0
|
|
CG2
|
A:ILE229
|
5.0
|
7.2
|
1.0
|
|
Iron binding site 4 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 4 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe804
b:11.0
occ:1.00
|
FE
|
A:HEC804
|
0.0
|
11.0
|
1.0
|
|
NE2
|
A:HIS286
|
2.0
|
9.3
|
1.0
|
|
NB
|
A:HEC804
|
2.0
|
8.8
|
1.0
|
|
NA
|
A:HEC804
|
2.0
|
11.6
|
1.0
|
|
NE2
|
A:HIS319
|
2.0
|
9.6
|
1.0
|
|
NC
|
A:HEC804
|
2.1
|
10.2
|
1.0
|
|
ND
|
A:HEC804
|
2.1
|
12.4
|
1.0
|
|
CE1
|
A:HIS286
|
2.9
|
12.6
|
1.0
|
|
CE1
|
A:HIS319
|
3.0
|
13.1
|
1.0
|
|
C4B
|
A:HEC804
|
3.0
|
9.9
|
1.0
|
|
C1B
|
A:HEC804
|
3.1
|
11.2
|
1.0
|
|
C1A
|
A:HEC804
|
3.1
|
11.6
|
1.0
|
|
C1C
|
A:HEC804
|
3.1
|
8.6
|
1.0
|
|
C4D
|
A:HEC804
|
3.1
|
16.2
|
1.0
|
|
CD2
|
A:HIS319
|
3.1
|
12.0
|
1.0
|
|
C4A
|
A:HEC804
|
3.1
|
13.5
|
1.0
|
|
C4C
|
A:HEC804
|
3.1
|
12.3
|
1.0
|
|
C1D
|
A:HEC804
|
3.1
|
15.3
|
1.0
|
|
CD2
|
A:HIS286
|
3.1
|
10.7
|
1.0
|
|
CHA
|
A:HEC804
|
3.4
|
14.3
|
1.0
|
|
CHC
|
A:HEC804
|
3.4
|
10.6
|
1.0
|
|
CHB
|
A:HEC804
|
3.4
|
11.1
|
1.0
|
|
CHD
|
A:HEC804
|
3.5
|
12.6
|
1.0
|
|
ND1
|
A:HIS286
|
4.1
|
12.4
|
1.0
|
|
ND1
|
A:HIS319
|
4.1
|
9.0
|
1.0
|
|
CG
|
A:HIS319
|
4.2
|
10.1
|
1.0
|
|
CG
|
A:HIS286
|
4.2
|
11.4
|
1.0
|
|
C3B
|
A:HEC804
|
4.3
|
9.6
|
1.0
|
|
C2B
|
A:HEC804
|
4.3
|
9.7
|
1.0
|
|
C2A
|
A:HEC804
|
4.3
|
13.8
|
1.0
|
|
C2C
|
A:HEC804
|
4.3
|
12.0
|
1.0
|
|
C3A
|
A:HEC804
|
4.3
|
14.3
|
1.0
|
|
C3D
|
A:HEC804
|
4.3
|
15.4
|
1.0
|
|
C3C
|
A:HEC804
|
4.3
|
13.1
|
1.0
|
|
C2D
|
A:HEC804
|
4.3
|
17.1
|
1.0
|
|
CD1
|
A:LEU318
|
4.7
|
12.4
|
1.0
|
|
CMA
|
A:HEC805
|
5.0
|
10.9
|
1.0
|
|
Iron binding site 5 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 5 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe805
b:13.4
occ:1.00
|
FE
|
A:HEC805
|
0.0
|
13.4
|
1.0
|
|
NE2
|
A:HIS310
|
2.0
|
10.6
|
1.0
|
|
NB
|
A:HEC805
|
2.0
|
12.6
|
1.0
|
|
NE2
|
A:HIS297
|
2.0
|
12.7
|
1.0
|
|
ND
|
A:HEC805
|
2.0
|
15.8
|
1.0
|
|
NA
|
A:HEC805
|
2.1
|
12.6
|
1.0
|
|
NC
|
A:HEC805
|
2.1
|
15.0
|
1.0
|
|
CE1
|
A:HIS310
|
3.0
|
13.5
|
1.0
|
|
CD2
|
A:HIS310
|
3.0
|
12.5
|
1.0
|
|
CE1
|
A:HIS297
|
3.0
|
16.2
|
1.0
|
|
C1D
|
A:HEC805
|
3.0
|
16.2
|
1.0
|
|
C4B
|
A:HEC805
|
3.0
|
13.4
|
1.0
|
|
C1B
|
A:HEC805
|
3.1
|
10.8
|
1.0
|
|
C4C
|
A:HEC805
|
3.1
|
15.4
|
1.0
|
|
CD2
|
A:HIS297
|
3.1
|
16.4
|
1.0
|
|
C4D
|
A:HEC805
|
3.1
|
16.9
|
1.0
|
|
C4A
|
A:HEC805
|
3.1
|
11.4
|
1.0
|
|
C1A
|
A:HEC805
|
3.1
|
14.8
|
1.0
|
|
C1C
|
A:HEC805
|
3.1
|
14.2
|
1.0
|
|
CHD
|
A:HEC805
|
3.4
|
17.7
|
1.0
|
|
CHA
|
A:HEC805
|
3.4
|
16.9
|
1.0
|
|
CHC
|
A:HEC805
|
3.5
|
13.2
|
1.0
|
|
CHB
|
A:HEC805
|
3.5
|
10.8
|
1.0
|
|
ND1
|
A:HIS310
|
4.1
|
12.5
|
1.0
|
|
CG
|
A:HIS310
|
4.1
|
11.1
|
1.0
|
|
ND1
|
A:HIS297
|
4.1
|
11.3
|
1.0
|
|
CG
|
A:HIS297
|
4.2
|
16.1
|
1.0
|
|
C3B
|
A:HEC805
|
4.2
|
13.9
|
1.0
|
|
C2B
|
A:HEC805
|
4.3
|
11.6
|
1.0
|
|
C2D
|
A:HEC805
|
4.3
|
20.0
|
1.0
|
|
C3A
|
A:HEC805
|
4.3
|
15.0
|
1.0
|
|
C3D
|
A:HEC805
|
4.3
|
16.7
|
1.0
|
|
C3C
|
A:HEC805
|
4.3
|
16.3
|
1.0
|
|
C2A
|
A:HEC805
|
4.3
|
14.0
|
1.0
|
|
C2C
|
A:HEC805
|
4.3
|
16.8
|
1.0
|
|
O
|
A:HOH1486
|
4.4
|
26.0
|
1.0
|
|
CE1
|
A:PHE291
|
5.0
|
12.7
|
1.0
|
|
Iron binding site 6 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 6 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe806
b:10.1
occ:1.00
|
FE
|
A:HEC806
|
0.0
|
10.1
|
1.0
|
|
NC
|
A:HEC806
|
2.0
|
9.1
|
1.0
|
|
NE2
|
A:HIS564
|
2.0
|
7.9
|
1.0
|
|
NB
|
A:HEC806
|
2.0
|
8.9
|
1.0
|
|
NA
|
A:HEC806
|
2.0
|
9.6
|
1.0
|
|
ND
|
A:HEC806
|
2.1
|
9.4
|
1.0
|
|
NE2
|
A:HIS500
|
2.1
|
10.6
|
1.0
|
|
CE1
|
A:HIS564
|
3.0
|
10.2
|
1.0
|
|
CE1
|
A:HIS500
|
3.0
|
10.9
|
1.0
|
|
C1B
|
A:HEC806
|
3.0
|
8.9
|
1.0
|
|
C4A
|
A:HEC806
|
3.0
|
10.5
|
1.0
|
|
C1C
|
A:HEC806
|
3.1
|
9.1
|
1.0
|
|
C4C
|
A:HEC806
|
3.1
|
9.7
|
1.0
|
|
CD2
|
A:HIS564
|
3.1
|
9.4
|
1.0
|
|
C1A
|
A:HEC806
|
3.1
|
8.4
|
1.0
|
|
C4B
|
A:HEC806
|
3.1
|
8.1
|
1.0
|
|
C1D
|
A:HEC806
|
3.1
|
11.3
|
1.0
|
|
C4D
|
A:HEC806
|
3.1
|
8.4
|
1.0
|
|
CD2
|
A:HIS500
|
3.1
|
8.6
|
1.0
|
|
CHB
|
A:HEC806
|
3.4
|
8.9
|
1.0
|
|
CHD
|
A:HEC806
|
3.4
|
12.2
|
1.0
|
|
CHA
|
A:HEC806
|
3.4
|
11.5
|
1.0
|
|
CHC
|
A:HEC806
|
3.5
|
10.2
|
1.0
|
|
ND1
|
A:HIS564
|
4.1
|
7.4
|
1.0
|
|
ND1
|
A:HIS500
|
4.1
|
8.5
|
1.0
|
|
CG
|
A:HIS564
|
4.2
|
9.0
|
1.0
|
|
CG
|
A:HIS500
|
4.2
|
11.0
|
1.0
|
|
C2B
|
A:HEC806
|
4.2
|
9.6
|
1.0
|
|
C3A
|
A:HEC806
|
4.3
|
12.1
|
1.0
|
|
C2A
|
A:HEC806
|
4.3
|
10.9
|
1.0
|
|
C3B
|
A:HEC806
|
4.3
|
9.3
|
1.0
|
|
C2C
|
A:HEC806
|
4.3
|
9.2
|
1.0
|
|
C3C
|
A:HEC806
|
4.3
|
10.7
|
1.0
|
|
C3D
|
A:HEC806
|
4.3
|
9.8
|
1.0
|
|
C2D
|
A:HEC806
|
4.3
|
10.2
|
1.0
|
|
Iron binding site 7 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 7 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe807
b:11.6
occ:1.00
|
FE
|
A:HEC807
|
0.0
|
11.6
|
1.0
|
|
NB
|
A:HEC807
|
2.0
|
11.3
|
1.0
|
|
NE2
|
A:HIS542
|
2.0
|
8.8
|
1.0
|
|
NA
|
A:HEC807
|
2.1
|
12.2
|
1.0
|
|
NE2
|
A:HIS507
|
2.1
|
14.8
|
1.0
|
|
ND
|
A:HEC807
|
2.1
|
11.0
|
1.0
|
|
NC
|
A:HEC807
|
2.1
|
12.9
|
1.0
|
|
CE1
|
A:HIS542
|
2.9
|
12.2
|
1.0
|
|
C1B
|
A:HEC807
|
3.0
|
9.5
|
1.0
|
|
CE1
|
A:HIS507
|
3.0
|
20.3
|
1.0
|
|
C4A
|
A:HEC807
|
3.1
|
9.2
|
1.0
|
|
C4B
|
A:HEC807
|
3.1
|
11.9
|
1.0
|
|
C1D
|
A:HEC807
|
3.1
|
12.5
|
1.0
|
|
CD2
|
A:HIS507
|
3.1
|
11.3
|
1.0
|
|
C4C
|
A:HEC807
|
3.1
|
10.8
|
1.0
|
|
C1A
|
A:HEC807
|
3.1
|
11.0
|
1.0
|
|
C4D
|
A:HEC807
|
3.1
|
13.2
|
1.0
|
|
CD2
|
A:HIS542
|
3.1
|
9.1
|
1.0
|
|
C1C
|
A:HEC807
|
3.1
|
12.4
|
1.0
|
|
CHB
|
A:HEC807
|
3.4
|
9.4
|
1.0
|
|
CHD
|
A:HEC807
|
3.4
|
12.4
|
1.0
|
|
CHA
|
A:HEC807
|
3.5
|
10.9
|
1.0
|
|
CHC
|
A:HEC807
|
3.5
|
12.0
|
1.0
|
|
ND1
|
A:HIS542
|
4.1
|
8.0
|
1.0
|
|
ND1
|
A:HIS507
|
4.1
|
20.0
|
1.0
|
|
CG
|
A:HIS542
|
4.2
|
9.4
|
1.0
|
|
CG
|
A:HIS507
|
4.2
|
13.7
|
1.0
|
|
C2B
|
A:HEC807
|
4.2
|
13.6
|
1.0
|
|
C3B
|
A:HEC807
|
4.3
|
11.5
|
1.0
|
|
C3A
|
A:HEC807
|
4.3
|
8.4
|
1.0
|
|
C3C
|
A:HEC807
|
4.3
|
9.4
|
1.0
|
|
C2A
|
A:HEC807
|
4.3
|
8.3
|
1.0
|
|
C2D
|
A:HEC807
|
4.3
|
16.3
|
1.0
|
|
C2C
|
A:HEC807
|
4.3
|
9.1
|
1.0
|
|
C3D
|
A:HEC807
|
4.3
|
12.8
|
1.0
|
|
Iron binding site 8 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 8 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe808
b:9.1
occ:1.00
|
FE
|
A:HEC808
|
0.0
|
9.1
|
1.0
|
|
NE2
|
A:HIS561
|
2.0
|
8.9
|
1.0
|
|
NE2
|
A:HIS580
|
2.0
|
8.0
|
1.0
|
|
NC
|
A:HEC808
|
2.0
|
6.6
|
1.0
|
|
NA
|
A:HEC808
|
2.0
|
4.7
|
1.0
|
|
NB
|
A:HEC808
|
2.1
|
9.8
|
1.0
|
|
ND
|
A:HEC808
|
2.1
|
10.5
|
1.0
|
|
CE1
|
A:HIS561
|
3.0
|
8.8
|
1.0
|
|
CE1
|
A:HIS580
|
3.0
|
10.5
|
1.0
|
|
CD2
|
A:HIS580
|
3.0
|
5.4
|
1.0
|
|
CD2
|
A:HIS561
|
3.0
|
9.0
|
1.0
|
|
C4A
|
A:HEC808
|
3.1
|
9.2
|
1.0
|
|
C1A
|
A:HEC808
|
3.1
|
10.4
|
1.0
|
|
C4C
|
A:HEC808
|
3.1
|
8.2
|
1.0
|
|
C1C
|
A:HEC808
|
3.1
|
8.0
|
1.0
|
|
C1B
|
A:HEC808
|
3.1
|
8.0
|
1.0
|
|
C4D
|
A:HEC808
|
3.1
|
9.7
|
1.0
|
|
C4B
|
A:HEC808
|
3.1
|
9.7
|
1.0
|
|
C1D
|
A:HEC808
|
3.1
|
9.2
|
1.0
|
|
CHA
|
A:HEC808
|
3.4
|
8.2
|
1.0
|
|
CHB
|
A:HEC808
|
3.4
|
7.7
|
1.0
|
|
CHC
|
A:HEC808
|
3.5
|
8.1
|
1.0
|
|
CHD
|
A:HEC808
|
3.5
|
8.7
|
1.0
|
|
ND1
|
A:HIS561
|
4.1
|
9.0
|
1.0
|
|
ND1
|
A:HIS580
|
4.1
|
11.2
|
1.0
|
|
CG
|
A:HIS580
|
4.1
|
6.8
|
1.0
|
|
CG
|
A:HIS561
|
4.1
|
7.6
|
1.0
|
|
C3A
|
A:HEC808
|
4.3
|
8.4
|
1.0
|
|
C2A
|
A:HEC808
|
4.3
|
8.7
|
1.0
|
|
C3C
|
A:HEC808
|
4.3
|
9.3
|
1.0
|
|
C2C
|
A:HEC808
|
4.3
|
8.4
|
1.0
|
|
C2B
|
A:HEC808
|
4.3
|
9.7
|
1.0
|
|
C3B
|
A:HEC808
|
4.3
|
9.0
|
1.0
|
|
C3D
|
A:HEC808
|
4.3
|
11.7
|
1.0
|
|
C2D
|
A:HEC808
|
4.4
|
8.6
|
1.0
|
|
CE1
|
A:PHE583
|
4.9
|
10.3
|
1.0
|
|
O
|
A:HOH912
|
5.0
|
8.7
|
1.0
|
|
Iron binding site 9 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 9 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe809
b:9.7
occ:1.00
|
FE
|
A:HEC809
|
0.0
|
9.7
|
1.0
|
|
NA
|
A:HEC809
|
2.0
|
12.8
|
1.0
|
|
NB
|
A:HEC809
|
2.0
|
7.7
|
1.0
|
|
ND
|
A:HEC809
|
2.0
|
9.2
|
1.0
|
|
NE2
|
A:HIS618
|
2.1
|
7.2
|
1.0
|
|
NC
|
A:HEC809
|
2.1
|
9.2
|
1.0
|
|
NE2
|
A:HIS666
|
2.1
|
9.4
|
1.0
|
|
CE1
|
A:HIS618
|
3.0
|
10.7
|
1.0
|
|
C1B
|
A:HEC809
|
3.1
|
9.2
|
1.0
|
|
C4D
|
A:HEC809
|
3.1
|
13.1
|
1.0
|
|
C4A
|
A:HEC809
|
3.1
|
11.0
|
1.0
|
|
C1D
|
A:HEC809
|
3.1
|
10.1
|
1.0
|
|
CD2
|
A:HIS666
|
3.1
|
11.8
|
1.0
|
|
CE1
|
A:HIS666
|
3.1
|
9.4
|
1.0
|
|
C4B
|
A:HEC809
|
3.1
|
9.4
|
1.0
|
|
C1A
|
A:HEC809
|
3.1
|
7.6
|
1.0
|
|
C1C
|
A:HEC809
|
3.1
|
6.1
|
1.0
|
|
C4C
|
A:HEC809
|
3.1
|
8.8
|
1.0
|
|
CD2
|
A:HIS618
|
3.1
|
7.4
|
1.0
|
|
CHB
|
A:HEC809
|
3.4
|
10.0
|
1.0
|
|
CHA
|
A:HEC809
|
3.4
|
10.8
|
1.0
|
|
CHD
|
A:HEC809
|
3.5
|
13.8
|
1.0
|
|
CHC
|
A:HEC809
|
3.5
|
7.5
|
1.0
|
|
ND1
|
A:HIS618
|
4.1
|
8.1
|
1.0
|
|
ND1
|
A:HIS666
|
4.2
|
9.6
|
1.0
|
|
CG
|
A:HIS666
|
4.2
|
10.8
|
1.0
|
|
CG
|
A:HIS618
|
4.2
|
10.0
|
1.0
|
|
C2B
|
A:HEC809
|
4.3
|
10.5
|
1.0
|
|
C3B
|
A:HEC809
|
4.3
|
7.1
|
1.0
|
|
C3A
|
A:HEC809
|
4.3
|
11.6
|
1.0
|
|
C2A
|
A:HEC809
|
4.3
|
9.6
|
1.0
|
|
C3D
|
A:HEC809
|
4.3
|
13.1
|
1.0
|
|
C2D
|
A:HEC809
|
4.3
|
10.9
|
1.0
|
|
C2C
|
A:HEC809
|
4.3
|
10.0
|
1.0
|
|
C3C
|
A:HEC809
|
4.3
|
10.7
|
1.0
|
|
CMA
|
A:HEC810
|
5.0
|
9.8
|
1.0
|
|
Iron binding site 10 out
of 10 in 4lm8
Go back to
Iron Binding Sites List in 4lm8
Iron binding site 10 out
of 10 in the Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of the Outer Membrane Decaheme Cytochrome Mtrc within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe810
b:11.9
occ:1.00
|
FE
|
A:HEC810
|
0.0
|
11.9
|
1.0
|
|
NE2
|
A:HIS659
|
2.0
|
9.3
|
1.0
|
|
NB
|
A:HEC810
|
2.0
|
9.8
|
1.0
|
|
ND
|
A:HEC810
|
2.0
|
11.5
|
1.0
|
|
NA
|
A:HEC810
|
2.0
|
9.8
|
1.0
|
|
NC
|
A:HEC810
|
2.1
|
13.0
|
1.0
|
|
NE2
|
A:HIS627
|
2.1
|
10.5
|
1.0
|
|
CE1
|
A:HIS659
|
2.9
|
10.1
|
1.0
|
|
CD2
|
A:HIS627
|
3.0
|
10.7
|
1.0
|
|
C4A
|
A:HEC810
|
3.0
|
10.2
|
1.0
|
|
C4D
|
A:HEC810
|
3.1
|
14.2
|
1.0
|
|
C1B
|
A:HEC810
|
3.1
|
8.3
|
1.0
|
|
C1A
|
A:HEC810
|
3.1
|
10.0
|
1.0
|
|
C1D
|
A:HEC810
|
3.1
|
13.9
|
1.0
|
|
C4B
|
A:HEC810
|
3.1
|
13.4
|
1.0
|
|
C4C
|
A:HEC810
|
3.1
|
11.9
|
1.0
|
|
CD2
|
A:HIS659
|
3.1
|
13.0
|
1.0
|
|
C1C
|
A:HEC810
|
3.1
|
11.9
|
1.0
|
|
CE1
|
A:HIS627
|
3.2
|
12.1
|
1.0
|
|
CHB
|
A:HEC810
|
3.4
|
8.8
|
1.0
|
|
CHA
|
A:HEC810
|
3.4
|
13.3
|
1.0
|
|
CHD
|
A:HEC810
|
3.4
|
12.6
|
1.0
|
|
CHC
|
A:HEC810
|
3.5
|
12.7
|
1.0
|
|
ND1
|
A:HIS659
|
4.1
|
11.2
|
1.0
|
|
CG
|
A:HIS659
|
4.2
|
8.0
|
1.0
|
|
CG
|
A:HIS627
|
4.2
|
12.2
|
1.0
|
|
ND1
|
A:HIS627
|
4.2
|
10.7
|
1.0
|
|
C3A
|
A:HEC810
|
4.3
|
9.4
|
1.0
|
|
C2B
|
A:HEC810
|
4.3
|
12.7
|
1.0
|
|
C2A
|
A:HEC810
|
4.3
|
10.0
|
1.0
|
|
C3B
|
A:HEC810
|
4.3
|
12.5
|
1.0
|
|
C3D
|
A:HEC810
|
4.3
|
15.3
|
1.0
|
|
C2D
|
A:HEC810
|
4.3
|
18.5
|
1.0
|
|
C2C
|
A:HEC810
|
4.3
|
9.4
|
1.0
|
|
C3C
|
A:HEC810
|
4.3
|
10.3
|
1.0
|
|
Reference:
M.J.Edwards,
D.J.Richardson,
T.A.Clarke.
Insights Into Electron Transfer at the Microbe-Mineral Interface: the X-Ray Crystal Structures of Shewanella Oneidensis Mtrc and Omca To Be Published.
Page generated: Mon Aug 5 06:27:50 2024
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