Atomistry » Iron » PDB 4m71-4n0k » 4mqj
Atomistry »
  Iron »
    PDB 4m71-4n0k »
      4mqj »

Iron in PDB 4mqj: Structure of Wild-Type Fetal Human Hemoglobin Hbf

Protein crystallography data

The structure of Structure of Wild-Type Fetal Human Hemoglobin Hbf, PDB code: 4mqj was solved by J.Soman, J.S.Olson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.14 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 105.651, 52.427, 106.153, 90.00, 113.84, 90.00
R / Rfree (%) 18 / 21.5

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Wild-Type Fetal Human Hemoglobin Hbf (pdb code 4mqj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of Wild-Type Fetal Human Hemoglobin Hbf, PDB code: 4mqj:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 1 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:12.4
occ:1.00
FE A:HEM201 0.0 12.4 1.0
C A:CMO202 1.8 15.7 1.0
NC A:HEM201 2.0 12.5 1.0
NA A:HEM201 2.1 12.1 1.0
NB A:HEM201 2.1 15.8 1.0
ND A:HEM201 2.1 13.0 1.0
NE2 A:HIS87 2.2 13.2 1.0
O A:CMO202 3.0 15.7 1.0
C4C A:HEM201 3.0 13.8 1.0
C1C A:HEM201 3.1 11.8 1.0
C4B A:HEM201 3.1 11.2 1.0
C1A A:HEM201 3.1 12.2 1.0
C4A A:HEM201 3.1 12.8 1.0
C4D A:HEM201 3.1 13.9 1.0
C1B A:HEM201 3.1 13.0 1.0
C1D A:HEM201 3.1 15.0 1.0
CD2 A:HIS87 3.1 12.2 1.0
CE1 A:HIS87 3.2 12.7 1.0
CHA A:HEM201 3.4 12.0 1.0
CHC A:HEM201 3.5 9.7 1.0
CHD A:HEM201 3.5 15.6 1.0
CHB A:HEM201 3.5 14.5 1.0
C3C A:HEM201 4.3 10.4 1.0
C2C A:HEM201 4.3 9.4 1.0
ND1 A:HIS87 4.3 12.9 1.0
CG A:HIS87 4.3 10.8 1.0
C3B A:HEM201 4.3 12.1 1.0
C3A A:HEM201 4.3 11.8 1.0
C2A A:HEM201 4.3 15.7 1.0
C2B A:HEM201 4.3 12.1 1.0
C3D A:HEM201 4.3 12.2 1.0
C2D A:HEM201 4.3 11.7 1.0
NE2 A:HIS58 4.5 15.2 1.0
CG2 A:VAL62 4.9 18.1 1.0

Iron binding site 2 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 2 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:19.9
occ:1.00
FE B:HEM201 0.0 19.9 1.0
NA B:HEM201 2.0 22.0 1.0
ND B:HEM201 2.0 20.6 1.0
NB B:HEM201 2.1 18.9 1.0
NC B:HEM201 2.1 21.9 1.0
NE2 B:HIS92 2.1 21.0 1.0
O B:HOH302 2.4 22.4 1.0
C4D B:HEM201 3.0 24.1 1.0
C1D B:HEM201 3.0 24.1 1.0
C1A B:HEM201 3.1 23.6 1.0
CE1 B:HIS92 3.1 22.1 1.0
C4A B:HEM201 3.1 21.4 1.0
C4C B:HEM201 3.1 18.5 1.0
C1B B:HEM201 3.1 20.3 1.0
CD2 B:HIS92 3.1 24.6 1.0
C1C B:HEM201 3.1 17.7 1.0
C4B B:HEM201 3.1 22.3 1.0
CHA B:HEM201 3.4 22.7 1.0
CHD B:HEM201 3.4 19.3 1.0
CHB B:HEM201 3.4 20.4 1.0
CHC B:HEM201 3.5 17.5 1.0
ND1 B:HIS92 4.2 22.8 1.0
CG B:HIS92 4.2 22.2 1.0
C2D B:HEM201 4.3 24.5 1.0
C2A B:HEM201 4.3 23.2 1.0
C3D B:HEM201 4.3 22.3 1.0
C3A B:HEM201 4.3 22.6 1.0
NE2 B:HIS63 4.3 26.5 1.0
C3C B:HEM201 4.3 17.6 1.0
C2B B:HEM201 4.3 18.8 1.0
C2C B:HEM201 4.3 17.1 1.0
C3B B:HEM201 4.3 19.9 1.0
CG2 B:VAL67 4.6 19.1 1.0

Iron binding site 3 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 3 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Fe201

b:13.0
occ:1.00
FE G:HEM201 0.0 13.0 1.0
C G:CMO202 1.7 11.5 1.0
NA G:HEM201 2.0 13.6 1.0
NC G:HEM201 2.1 11.9 1.0
NB G:HEM201 2.1 13.1 1.0
ND G:HEM201 2.1 14.3 1.0
NE2 G:HIS87 2.2 13.0 1.0
O G:CMO202 2.9 20.3 1.0
C1A G:HEM201 3.0 12.6 1.0
C4A G:HEM201 3.0 11.6 1.0
C1B G:HEM201 3.1 10.7 1.0
C1C G:HEM201 3.1 14.6 1.0
C4D G:HEM201 3.1 12.8 1.0
C4C G:HEM201 3.1 13.8 1.0
C4B G:HEM201 3.1 10.6 1.0
C1D G:HEM201 3.1 15.0 1.0
CD2 G:HIS87 3.1 14.4 1.0
CE1 G:HIS87 3.1 16.4 1.0
CHA G:HEM201 3.4 13.1 1.0
CHB G:HEM201 3.4 11.0 1.0
CHC G:HEM201 3.5 9.7 1.0
CHD G:HEM201 3.5 16.4 1.0
C2A G:HEM201 4.2 13.0 1.0
C3A G:HEM201 4.2 13.7 1.0
ND1 G:HIS87 4.3 15.8 1.0
C2B G:HEM201 4.3 12.6 1.0
C2C G:HEM201 4.3 13.8 1.0
C3C G:HEM201 4.3 13.5 1.0
CG G:HIS87 4.3 14.0 1.0
C3B G:HEM201 4.3 12.1 1.0
C3D G:HEM201 4.3 13.9 1.0
C2D G:HEM201 4.3 16.7 1.0
NE2 G:HIS58 4.5 17.8 1.0

Iron binding site 4 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 4 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe201

b:15.7
occ:1.00
FE H:HEM201 0.0 15.7 1.0
NC H:HEM201 2.0 16.3 1.0
NB H:HEM201 2.0 15.1 1.0
ND H:HEM201 2.0 16.9 1.0
NA H:HEM201 2.1 17.3 1.0
NE2 H:HIS92 2.1 16.2 1.0
O H:HOH301 2.5 17.3 1.0
CE1 H:HIS92 3.0 16.9 1.0
C1C H:HEM201 3.0 15.2 1.0
C4C H:HEM201 3.1 16.0 1.0
C1D H:HEM201 3.1 20.1 1.0
C4D H:HEM201 3.1 18.2 1.0
C1B H:HEM201 3.1 14.0 1.0
C4B H:HEM201 3.1 17.0 1.0
C1A H:HEM201 3.1 17.7 1.0
C4A H:HEM201 3.1 17.0 1.0
CD2 H:HIS92 3.1 16.4 1.0
CHD H:HEM201 3.4 19.4 1.0
CHC H:HEM201 3.4 16.0 1.0
CHA H:HEM201 3.4 18.6 1.0
CHB H:HEM201 3.4 14.9 1.0
ND1 H:HIS92 4.2 19.8 1.0
CG H:HIS92 4.2 17.2 1.0
C2C H:HEM201 4.3 13.8 1.0
C3C H:HEM201 4.3 15.2 1.0
C3D H:HEM201 4.3 21.1 1.0
C2D H:HEM201 4.3 21.8 1.0
C2A H:HEM201 4.3 18.2 1.0
C2B H:HEM201 4.3 13.5 1.0
C3B H:HEM201 4.3 14.3 1.0
C3A H:HEM201 4.3 17.2 1.0
NE2 H:HIS63 4.5 26.7 1.0
CG2 H:VAL67 4.6 20.4 1.0

Iron binding site 5 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 5 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe201

b:17.5
occ:1.00
FE C:HEM201 0.0 17.5 1.0
C C:CMO202 1.7 20.1 1.0
NA C:HEM201 2.0 17.7 1.0
NB C:HEM201 2.1 17.1 1.0
NC C:HEM201 2.1 21.6 1.0
ND C:HEM201 2.1 25.7 1.0
NE2 C:HIS87 2.1 17.3 1.0
O C:CMO202 2.9 25.6 1.0
CE1 C:HIS87 3.0 23.4 1.0
C1A C:HEM201 3.1 18.6 1.0
C4A C:HEM201 3.1 18.8 1.0
C4D C:HEM201 3.1 21.2 1.0
C1B C:HEM201 3.1 21.8 1.0
C4B C:HEM201 3.1 15.2 1.0
C1C C:HEM201 3.1 18.7 1.0
C4C C:HEM201 3.1 18.0 1.0
C1D C:HEM201 3.1 21.1 1.0
CD2 C:HIS87 3.2 17.4 1.0
CHA C:HEM201 3.4 19.0 1.0
CHB C:HEM201 3.5 21.6 1.0
CHC C:HEM201 3.5 19.6 1.0
CHD C:HEM201 3.5 18.7 1.0
ND1 C:HIS87 4.2 23.2 1.0
C3A C:HEM201 4.3 18.8 1.0
C2A C:HEM201 4.3 19.3 1.0
CG C:HIS87 4.3 20.4 1.0
C2C C:HEM201 4.3 16.5 1.0
C2B C:HEM201 4.3 15.7 1.0
C3B C:HEM201 4.3 16.0 1.0
C3C C:HEM201 4.3 17.9 1.0
C3D C:HEM201 4.3 22.4 1.0
C2D C:HEM201 4.3 22.4 1.0
NE2 C:HIS58 4.6 24.5 1.0

Iron binding site 6 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 6 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe201

b:18.8
occ:1.00
FE D:HEM201 0.0 18.8 1.0
NA D:HEM201 2.0 17.9 1.0
NB D:HEM201 2.0 18.8 1.0
NE2 D:HIS92 2.1 20.1 1.0
NC D:HEM201 2.1 18.6 1.0
ND D:HEM201 2.1 18.5 1.0
O D:HOH307 2.6 19.3 1.0
CE1 D:HIS92 3.0 29.6 1.0
C1A D:HEM201 3.1 19.0 1.0
C1C D:HEM201 3.1 16.5 1.0
C4A D:HEM201 3.1 17.6 1.0
C1B D:HEM201 3.1 19.9 1.0
C4D D:HEM201 3.1 19.6 1.0
C4B D:HEM201 3.1 19.7 1.0
C4C D:HEM201 3.1 17.1 1.0
CD2 D:HIS92 3.1 19.2 1.0
C1D D:HEM201 3.1 29.1 1.0
CHA D:HEM201 3.4 21.6 1.0
CHC D:HEM201 3.4 16.0 1.0
CHB D:HEM201 3.4 16.6 1.0
CHD D:HEM201 3.5 26.8 1.0
ND1 D:HIS92 4.1 20.4 1.0
CG D:HIS92 4.2 20.3 1.0
C2A D:HEM201 4.3 19.5 1.0
C2C D:HEM201 4.3 21.6 1.0
C3A D:HEM201 4.3 18.6 1.0
C2B D:HEM201 4.3 19.6 1.0
C3C D:HEM201 4.3 17.9 1.0
C3B D:HEM201 4.3 21.2 1.0
C3D D:HEM201 4.3 20.5 1.0
C2D D:HEM201 4.3 26.0 1.0
NE2 D:HIS63 4.4 27.0 1.0
CG2 D:VAL67 4.6 17.9 1.0

Iron binding site 7 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 7 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:18.5
occ:1.00
FE E:HEM201 0.0 18.5 1.0
C E:CMO202 1.8 20.1 1.0
NC E:HEM201 2.0 19.3 1.0
NA E:HEM201 2.0 17.4 1.0
NE2 E:HIS87 2.1 18.9 1.0
ND E:HEM201 2.1 19.2 1.0
NB E:HEM201 2.1 17.3 1.0
CE1 E:HIS87 3.0 25.9 1.0
O E:CMO202 3.0 24.1 1.0
C1A E:HEM201 3.0 19.4 1.0
C4C E:HEM201 3.0 21.6 1.0
C1C E:HEM201 3.1 17.8 1.0
C4A E:HEM201 3.1 22.2 1.0
CD2 E:HIS87 3.1 21.0 1.0
C1B E:HEM201 3.1 19.4 1.0
C4D E:HEM201 3.1 22.9 1.0
C1D E:HEM201 3.1 17.2 1.0
C4B E:HEM201 3.1 14.9 1.0
CHA E:HEM201 3.4 22.3 1.0
CHD E:HEM201 3.5 18.2 1.0
CHB E:HEM201 3.5 22.0 1.0
CHC E:HEM201 3.5 16.3 1.0
ND1 E:HIS87 4.1 22.6 1.0
CG E:HIS87 4.2 18.9 1.0
C3C E:HEM201 4.2 16.7 1.0
C2C E:HEM201 4.2 18.6 1.0
C2A E:HEM201 4.3 21.6 1.0
C3A E:HEM201 4.3 22.8 1.0
C2B E:HEM201 4.3 19.4 1.0
C3B E:HEM201 4.3 19.0 1.0
C3D E:HEM201 4.3 22.3 1.0
C2D E:HEM201 4.3 22.7 1.0
NE2 E:HIS58 4.5 23.3 1.0

Iron binding site 8 out of 8 in 4mqj

Go back to Iron Binding Sites List in 4mqj
Iron binding site 8 out of 8 in the Structure of Wild-Type Fetal Human Hemoglobin Hbf


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Wild-Type Fetal Human Hemoglobin Hbf within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe201

b:24.3
occ:1.00
FE F:HEM201 0.0 24.3 1.0
O1 F:OXY202 1.8 38.3 1.0
NC F:HEM201 2.0 20.5 1.0
NB F:HEM201 2.0 24.6 1.0
ND F:HEM201 2.0 23.7 1.0
NA F:HEM201 2.1 24.2 1.0
NE2 F:HIS92 2.1 23.7 1.0
O2 F:OXY202 2.8 27.0 1.0
C4C F:HEM201 3.0 21.4 1.0
C1D F:HEM201 3.1 27.9 1.0
C4B F:HEM201 3.1 20.2 1.0
C4D F:HEM201 3.1 26.9 1.0
C1B F:HEM201 3.1 27.0 1.0
C1C F:HEM201 3.1 19.1 1.0
C1A F:HEM201 3.1 26.4 1.0
C4A F:HEM201 3.1 29.2 1.0
CE1 F:HIS92 3.1 26.8 1.0
CD2 F:HIS92 3.1 25.6 1.0
CHD F:HEM201 3.4 24.3 1.0
CHA F:HEM201 3.4 26.5 1.0
CHB F:HEM201 3.4 29.6 1.0
CHC F:HEM201 3.4 18.7 1.0
ND1 F:HIS92 4.2 30.7 1.0
C3C F:HEM201 4.3 23.4 1.0
C2C F:HEM201 4.3 25.2 1.0
CG F:HIS92 4.3 25.9 1.0
C3B F:HEM201 4.3 25.1 1.0
C2D F:HEM201 4.3 24.7 1.0
C2B F:HEM201 4.3 25.8 1.0
C3D F:HEM201 4.3 26.2 1.0
C2A F:HEM201 4.3 29.9 1.0
C3A F:HEM201 4.3 28.1 1.0
NE2 F:HIS63 4.4 27.7 1.0
CG2 F:VAL67 4.8 24.7 1.0

Reference:

J.Soman, J.S.Olson. Structure of Wild-Type Fetal Human Hemoglobin Hbf To Be Published.
Page generated: Sun Dec 13 15:41:59 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy