Iron in PDB 4n0k: Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex
Protein crystallography data
The structure of Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex, PDB code: 4n0k
was solved by
R.E.Mcgovern,
V.E.Pye,
P.B.Crowley,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
15.39 /
1.05
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
36.110,
55.780,
119.080,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15.7 /
18
|
Iron Binding Sites:
The binding sites of Iron atom in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex
(pdb code 4n0k). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex, PDB code: 4n0k:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 4n0k
Go back to
Iron Binding Sites List in 4n0k
Iron binding site 1 out
of 2 in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:4.5
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
4.5
|
1.0
|
ND
|
A:HEM201
|
2.0
|
4.5
|
1.0
|
NA
|
A:HEM201
|
2.0
|
4.4
|
1.0
|
NE2
|
A:HIS18
|
2.0
|
4.7
|
1.0
|
NB
|
A:HEM201
|
2.1
|
4.2
|
1.0
|
NC
|
A:HEM201
|
2.1
|
4.6
|
1.0
|
SD
|
A:MET80
|
2.3
|
5.0
|
1.0
|
CE1
|
A:HIS18
|
2.9
|
5.0
|
1.0
|
C1D
|
A:HEM201
|
3.0
|
4.8
|
1.0
|
C4D
|
A:HEM201
|
3.0
|
4.7
|
1.0
|
C1B
|
A:HEM201
|
3.0
|
4.5
|
1.0
|
C1A
|
A:HEM201
|
3.0
|
4.5
|
1.0
|
C4A
|
A:HEM201
|
3.0
|
4.6
|
1.0
|
C4C
|
A:HEM201
|
3.0
|
5.0
|
1.0
|
C4B
|
A:HEM201
|
3.0
|
4.6
|
1.0
|
CD2
|
A:HIS18
|
3.1
|
4.9
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
4.9
|
1.0
|
CE
|
A:MET80
|
3.4
|
5.6
|
1.0
|
CHB
|
A:HEM201
|
3.4
|
5.0
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
5.0
|
1.0
|
CG
|
A:MET80
|
3.4
|
5.3
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
4.5
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
5.2
|
1.0
|
ND1
|
A:HIS18
|
4.1
|
5.0
|
1.0
|
CG
|
A:HIS18
|
4.2
|
5.1
|
1.0
|
C2A
|
A:HEM201
|
4.2
|
4.7
|
1.0
|
C3A
|
A:HEM201
|
4.2
|
4.8
|
1.0
|
CB
|
A:MET80
|
4.2
|
5.3
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
4.9
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
5.4
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
4.9
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
5.0
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
5.5
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
4.8
|
1.0
|
OH
|
A:TYR67
|
4.9
|
8.1
|
1.0
|
|
Iron binding site 2 out
of 2 in 4n0k
Go back to
Iron Binding Sites List in 4n0k
Iron binding site 2 out
of 2 in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:5.7
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
5.7
|
1.0
|
ND
|
B:HEM201
|
1.9
|
5.9
|
1.0
|
NA
|
B:HEM201
|
2.0
|
6.0
|
1.0
|
NE2
|
B:HIS18
|
2.0
|
5.8
|
1.0
|
NC
|
B:HEM201
|
2.1
|
6.2
|
1.0
|
NB
|
B:HEM201
|
2.1
|
5.8
|
1.0
|
SD
|
B:MET80
|
2.3
|
6.9
|
1.0
|
CE1
|
B:HIS18
|
2.9
|
6.3
|
1.0
|
C1D
|
B:HEM201
|
3.0
|
5.9
|
1.0
|
C4D
|
B:HEM201
|
3.0
|
6.2
|
1.0
|
C1A
|
B:HEM201
|
3.0
|
5.8
|
1.0
|
C1B
|
B:HEM201
|
3.0
|
5.9
|
1.0
|
C4A
|
B:HEM201
|
3.0
|
6.1
|
1.0
|
C4C
|
B:HEM201
|
3.0
|
6.3
|
1.0
|
C4B
|
B:HEM201
|
3.0
|
6.0
|
1.0
|
CD2
|
B:HIS18
|
3.0
|
6.2
|
1.0
|
C1C
|
B:HEM201
|
3.1
|
6.3
|
1.0
|
CE
|
B:MET80
|
3.4
|
8.3
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
5.8
|
1.0
|
CG
|
B:MET80
|
3.4
|
7.5
|
1.0
|
CHB
|
B:HEM201
|
3.4
|
6.3
|
1.0
|
CHA
|
B:HEM201
|
3.4
|
6.0
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
6.5
|
1.0
|
ND1
|
B:HIS18
|
4.1
|
6.2
|
1.0
|
CG
|
B:HIS18
|
4.2
|
5.9
|
1.0
|
CB
|
B:MET80
|
4.2
|
7.7
|
1.0
|
C2A
|
B:HEM201
|
4.2
|
6.1
|
1.0
|
C3A
|
B:HEM201
|
4.2
|
6.2
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
6.2
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
6.9
|
1.0
|
C3D
|
B:HEM201
|
4.3
|
6.1
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
6.1
|
1.0
|
C2C
|
B:HEM201
|
4.3
|
7.0
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
6.3
|
1.0
|
OH
|
B:TYR67
|
4.7
|
10.8
|
1.0
|
|
Reference:
R.E.Mcgovern,
A.A.Mccarthy,
P.B.Crowley.
A Cytochrome C-Calixarene Structure at Atomic Resolution To Be Published.
Page generated: Mon Aug 5 07:04:45 2024
|