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Iron in PDB 4n0k: Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex

Protein crystallography data

The structure of Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex, PDB code: 4n0k was solved by R.E.Mcgovern, V.E.Pye, P.B.Crowley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.39 / 1.05
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.110, 55.780, 119.080, 90.00, 90.00, 90.00
R / Rfree (%) 15.7 / 18

Iron Binding Sites:

The binding sites of Iron atom in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex (pdb code 4n0k). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex, PDB code: 4n0k:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4n0k

Go back to Iron Binding Sites List in 4n0k
Iron binding site 1 out of 2 in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:4.5
occ:1.00
FE A:HEM201 0.0 4.5 1.0
ND A:HEM201 2.0 4.5 1.0
NA A:HEM201 2.0 4.4 1.0
NE2 A:HIS18 2.0 4.7 1.0
NB A:HEM201 2.1 4.2 1.0
NC A:HEM201 2.1 4.6 1.0
SD A:MET80 2.3 5.0 1.0
CE1 A:HIS18 2.9 5.0 1.0
C1D A:HEM201 3.0 4.8 1.0
C4D A:HEM201 3.0 4.7 1.0
C1B A:HEM201 3.0 4.5 1.0
C1A A:HEM201 3.0 4.5 1.0
C4A A:HEM201 3.0 4.6 1.0
C4C A:HEM201 3.0 5.0 1.0
C4B A:HEM201 3.0 4.6 1.0
CD2 A:HIS18 3.1 4.9 1.0
C1C A:HEM201 3.1 4.9 1.0
CE A:MET80 3.4 5.6 1.0
CHB A:HEM201 3.4 5.0 1.0
CHD A:HEM201 3.4 5.0 1.0
CG A:MET80 3.4 5.3 1.0
CHA A:HEM201 3.4 4.5 1.0
CHC A:HEM201 3.4 5.2 1.0
ND1 A:HIS18 4.1 5.0 1.0
CG A:HIS18 4.2 5.1 1.0
C2A A:HEM201 4.2 4.7 1.0
C3A A:HEM201 4.2 4.8 1.0
CB A:MET80 4.2 5.3 1.0
C2D A:HEM201 4.3 4.9 1.0
C3C A:HEM201 4.3 5.4 1.0
C2B A:HEM201 4.3 4.9 1.0
C3D A:HEM201 4.3 5.0 1.0
C2C A:HEM201 4.3 5.5 1.0
C3B A:HEM201 4.3 4.8 1.0
OH A:TYR67 4.9 8.1 1.0

Iron binding site 2 out of 2 in 4n0k

Go back to Iron Binding Sites List in 4n0k
Iron binding site 2 out of 2 in the Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Atomic Resolution Crystal Structure of A Cytochrome C-Calixarene Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:5.7
occ:1.00
FE B:HEM201 0.0 5.7 1.0
ND B:HEM201 1.9 5.9 1.0
NA B:HEM201 2.0 6.0 1.0
NE2 B:HIS18 2.0 5.8 1.0
NC B:HEM201 2.1 6.2 1.0
NB B:HEM201 2.1 5.8 1.0
SD B:MET80 2.3 6.9 1.0
CE1 B:HIS18 2.9 6.3 1.0
C1D B:HEM201 3.0 5.9 1.0
C4D B:HEM201 3.0 6.2 1.0
C1A B:HEM201 3.0 5.8 1.0
C1B B:HEM201 3.0 5.9 1.0
C4A B:HEM201 3.0 6.1 1.0
C4C B:HEM201 3.0 6.3 1.0
C4B B:HEM201 3.0 6.0 1.0
CD2 B:HIS18 3.0 6.2 1.0
C1C B:HEM201 3.1 6.3 1.0
CE B:MET80 3.4 8.3 1.0
CHD B:HEM201 3.4 5.8 1.0
CG B:MET80 3.4 7.5 1.0
CHB B:HEM201 3.4 6.3 1.0
CHA B:HEM201 3.4 6.0 1.0
CHC B:HEM201 3.4 6.5 1.0
ND1 B:HIS18 4.1 6.2 1.0
CG B:HIS18 4.2 5.9 1.0
CB B:MET80 4.2 7.7 1.0
C2A B:HEM201 4.2 6.1 1.0
C3A B:HEM201 4.2 6.2 1.0
C2D B:HEM201 4.3 6.2 1.0
C3C B:HEM201 4.3 6.9 1.0
C3D B:HEM201 4.3 6.1 1.0
C2B B:HEM201 4.3 6.1 1.0
C2C B:HEM201 4.3 7.0 1.0
C3B B:HEM201 4.3 6.3 1.0
OH B:TYR67 4.7 10.8 1.0

Reference:

R.E.Mcgovern, A.A.Mccarthy, P.B.Crowley. A Cytochrome C-Calixarene Structure at Atomic Resolution To Be Published.
Page generated: Mon Aug 5 07:04:45 2024

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