Iron in PDB 4n7n: Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Protein crystallography data
The structure of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution., PDB code: 4n7n
was solved by
K.Sugiyama,
N.Shibayama,
S.Y.Park,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
20.00 /
2.75
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
227.619,
56.061,
141.555,
90.00,
102.49,
90.00
|
R / Rfree (%)
|
25.1 /
28.6
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
(pdb code 4n7n). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution., PDB code: 4n7n:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 1 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:81.6
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
81.6
|
1.0
|
NC
|
A:HEM201
|
2.0
|
82.3
|
1.0
|
NA
|
A:HEM201
|
2.0
|
87.7
|
1.0
|
NB
|
A:HEM201
|
2.1
|
83.3
|
1.0
|
ND
|
A:HEM201
|
2.1
|
85.8
|
1.0
|
NE2
|
A:HIS87
|
2.3
|
77.0
|
1.0
|
C4C
|
A:HEM201
|
3.0
|
82.1
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
83.2
|
1.0
|
C1D
|
A:HEM201
|
3.1
|
86.4
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
88.7
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
89.8
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
79.7
|
1.0
|
C4D
|
A:HEM201
|
3.1
|
87.5
|
1.0
|
C4B
|
A:HEM201
|
3.1
|
80.6
|
1.0
|
CE1
|
A:HIS87
|
3.2
|
76.8
|
1.0
|
CD2
|
A:HIS87
|
3.3
|
77.4
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
84.1
|
1.0
|
CHB
|
A:HEM201
|
3.4
|
86.5
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
89.0
|
1.0
|
CHC
|
A:HEM201
|
3.5
|
80.0
|
1.0
|
NE2
|
A:HIS58
|
4.1
|
0.7
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
79.8
|
1.0
|
C2A
|
A:HEM201
|
4.3
|
91.0
|
1.0
|
C3A
|
A:HEM201
|
4.3
|
90.2
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
80.0
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
87.4
|
1.0
|
ND1
|
A:HIS87
|
4.3
|
76.0
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
80.8
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
88.2
|
1.0
|
C3B
|
A:HEM201
|
4.4
|
79.8
|
1.0
|
CG
|
A:HIS87
|
4.4
|
76.7
|
1.0
|
CE1
|
A:HIS58
|
4.5
|
0.5
|
1.0
|
CG2
|
A:VAL62
|
4.8
|
96.3
|
1.0
|
|
Iron binding site 2 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 2 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:55.2
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
55.2
|
1.0
|
NC
|
B:HEM201
|
2.0
|
54.3
|
1.0
|
NA
|
B:HEM201
|
2.1
|
57.6
|
1.0
|
NB
|
B:HEM201
|
2.1
|
53.3
|
1.0
|
ND
|
B:HEM201
|
2.1
|
55.7
|
1.0
|
NE2
|
B:HIS92
|
2.2
|
34.6
|
1.0
|
C4C
|
B:HEM201
|
3.0
|
54.5
|
1.0
|
CD2
|
B:HIS92
|
3.1
|
40.4
|
1.0
|
C1C
|
B:HEM201
|
3.1
|
52.7
|
1.0
|
C1D
|
B:HEM201
|
3.1
|
53.7
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
58.6
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
57.5
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
53.0
|
1.0
|
C4D
|
B:HEM201
|
3.1
|
56.4
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
50.7
|
1.0
|
CE1
|
B:HIS92
|
3.3
|
41.3
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
54.8
|
1.0
|
CHB
|
B:HEM201
|
3.4
|
55.7
|
1.0
|
CHA
|
B:HEM201
|
3.5
|
56.3
|
1.0
|
CHC
|
B:HEM201
|
3.5
|
51.8
|
1.0
|
NE2
|
B:HIS63
|
3.9
|
73.6
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
52.7
|
1.0
|
CG
|
B:HIS92
|
4.3
|
42.0
|
1.0
|
C2C
|
B:HEM201
|
4.3
|
52.4
|
1.0
|
C2A
|
B:HEM201
|
4.3
|
60.3
|
1.0
|
C3A
|
B:HEM201
|
4.3
|
59.0
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
55.8
|
1.0
|
C2B
|
B:HEM201
|
4.4
|
52.7
|
1.0
|
ND1
|
B:HIS92
|
4.4
|
40.2
|
1.0
|
C3B
|
B:HEM201
|
4.4
|
52.6
|
1.0
|
C3D
|
B:HEM201
|
4.4
|
58.0
|
1.0
|
CE1
|
B:HIS63
|
4.4
|
73.0
|
1.0
|
CG2
|
B:VAL67
|
4.5
|
56.3
|
1.0
|
|
Iron binding site 3 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 3 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:82.9
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
82.9
|
1.0
|
NC
|
C:HEM201
|
2.0
|
83.0
|
1.0
|
NB
|
C:HEM201
|
2.1
|
83.5
|
1.0
|
NA
|
C:HEM201
|
2.1
|
87.7
|
1.0
|
NE2
|
C:HIS87
|
2.1
|
68.8
|
1.0
|
ND
|
C:HEM201
|
2.1
|
83.8
|
1.0
|
C4C
|
C:HEM201
|
3.0
|
81.0
|
1.0
|
CE1
|
C:HIS87
|
3.0
|
70.1
|
1.0
|
C1B
|
C:HEM201
|
3.1
|
85.3
|
1.0
|
C1C
|
C:HEM201
|
3.1
|
81.5
|
1.0
|
C1D
|
C:HEM201
|
3.1
|
83.2
|
1.0
|
CD2
|
C:HIS87
|
3.1
|
70.3
|
1.0
|
C4B
|
C:HEM201
|
3.1
|
83.0
|
1.0
|
C4A
|
C:HEM201
|
3.1
|
87.1
|
1.0
|
C1A
|
C:HEM201
|
3.1
|
88.1
|
1.0
|
C4D
|
C:HEM201
|
3.1
|
86.0
|
1.0
|
CHD
|
C:HEM201
|
3.4
|
82.3
|
1.0
|
CHB
|
C:HEM201
|
3.4
|
86.2
|
1.0
|
CHC
|
C:HEM201
|
3.5
|
82.7
|
1.0
|
CHA
|
C:HEM201
|
3.5
|
86.8
|
1.0
|
ND1
|
C:HIS87
|
4.2
|
70.2
|
1.0
|
NE2
|
C:HIS58
|
4.2
|
88.5
|
1.0
|
CG
|
C:HIS87
|
4.2
|
71.7
|
1.0
|
C3C
|
C:HEM201
|
4.3
|
79.1
|
1.0
|
C2C
|
C:HEM201
|
4.3
|
80.0
|
1.0
|
C2B
|
C:HEM201
|
4.3
|
85.2
|
1.0
|
C3B
|
C:HEM201
|
4.3
|
83.5
|
1.0
|
C2D
|
C:HEM201
|
4.3
|
83.7
|
1.0
|
C3A
|
C:HEM201
|
4.4
|
88.7
|
1.0
|
C2A
|
C:HEM201
|
4.4
|
90.0
|
1.0
|
C3D
|
C:HEM201
|
4.4
|
85.4
|
1.0
|
CE1
|
C:HIS58
|
4.4
|
88.9
|
1.0
|
CG2
|
C:VAL62
|
4.9
|
91.6
|
1.0
|
|
Iron binding site 4 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 4 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:96.4
occ:1.00
|
FE
|
D:HEM201
|
0.0
|
96.4
|
1.0
|
NC
|
D:HEM201
|
2.0
|
96.6
|
1.0
|
NB
|
D:HEM201
|
2.0
|
97.0
|
1.0
|
NA
|
D:HEM201
|
2.0
|
0.9
|
1.0
|
ND
|
D:HEM201
|
2.1
|
99.5
|
1.0
|
NE2
|
D:HIS92
|
2.4
|
85.6
|
1.0
|
C1B
|
D:HEM201
|
3.0
|
97.5
|
1.0
|
C4C
|
D:HEM201
|
3.1
|
95.5
|
1.0
|
C4A
|
D:HEM201
|
3.1
|
0.2
|
1.0
|
C1A
|
D:HEM201
|
3.1
|
0.6
|
1.0
|
C1C
|
D:HEM201
|
3.1
|
95.2
|
1.0
|
C4B
|
D:HEM201
|
3.1
|
96.0
|
1.0
|
C1D
|
D:HEM201
|
3.1
|
98.9
|
1.0
|
C4D
|
D:HEM201
|
3.1
|
0.3
|
1.0
|
CD2
|
D:HIS92
|
3.2
|
87.0
|
1.0
|
CHB
|
D:HEM201
|
3.4
|
99.7
|
1.0
|
CHD
|
D:HEM201
|
3.4
|
97.7
|
1.0
|
CHA
|
D:HEM201
|
3.4
|
0.3
|
1.0
|
CHC
|
D:HEM201
|
3.5
|
95.7
|
1.0
|
CE1
|
D:HIS92
|
3.5
|
86.1
|
1.0
|
NE2
|
D:HIS63
|
4.2
|
0.5
|
1.0
|
C2B
|
D:HEM201
|
4.3
|
97.3
|
1.0
|
C3C
|
D:HEM201
|
4.3
|
95.0
|
1.0
|
C3A
|
D:HEM201
|
4.3
|
0.3
|
1.0
|
CG2
|
D:VAL67
|
4.3
|
0.1
|
1.0
|
C2C
|
D:HEM201
|
4.3
|
95.1
|
1.0
|
C2A
|
D:HEM201
|
4.3
|
0.5
|
1.0
|
C3B
|
D:HEM201
|
4.3
|
96.4
|
1.0
|
C2D
|
D:HEM201
|
4.4
|
99.7
|
1.0
|
C3D
|
D:HEM201
|
4.4
|
0.4
|
1.0
|
CG
|
D:HIS92
|
4.4
|
86.7
|
1.0
|
ND1
|
D:HIS92
|
4.6
|
85.9
|
1.0
|
|
Iron binding site 5 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 5 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:84.9
occ:1.00
|
FE
|
E:HEM201
|
0.0
|
84.9
|
1.0
|
NC
|
E:HEM201
|
2.0
|
87.9
|
1.0
|
NA
|
E:HEM201
|
2.1
|
90.7
|
1.0
|
NB
|
E:HEM201
|
2.1
|
89.4
|
1.0
|
ND
|
E:HEM201
|
2.1
|
89.3
|
1.0
|
NE2
|
E:HIS87
|
2.1
|
69.5
|
1.0
|
CE1
|
E:HIS87
|
2.8
|
70.3
|
1.0
|
C4C
|
E:HEM201
|
3.0
|
87.2
|
1.0
|
C1B
|
E:HEM201
|
3.1
|
88.6
|
1.0
|
C4A
|
E:HEM201
|
3.1
|
91.5
|
1.0
|
C1C
|
E:HEM201
|
3.1
|
87.7
|
1.0
|
C1D
|
E:HEM201
|
3.1
|
88.9
|
1.0
|
C1A
|
E:HEM201
|
3.1
|
90.9
|
1.0
|
C4B
|
E:HEM201
|
3.1
|
88.9
|
1.0
|
C4D
|
E:HEM201
|
3.1
|
88.7
|
1.0
|
CD2
|
E:HIS87
|
3.4
|
70.8
|
1.0
|
CHD
|
E:HEM201
|
3.4
|
88.6
|
1.0
|
CHB
|
E:HEM201
|
3.4
|
90.6
|
1.0
|
CHA
|
E:HEM201
|
3.5
|
88.8
|
1.0
|
CHC
|
E:HEM201
|
3.5
|
89.3
|
1.0
|
ND1
|
E:HIS87
|
4.1
|
71.9
|
1.0
|
NE2
|
E:HIS58
|
4.2
|
75.0
|
1.0
|
C3C
|
E:HEM201
|
4.3
|
85.9
|
1.0
|
C2C
|
E:HEM201
|
4.3
|
86.8
|
1.0
|
C3A
|
E:HEM201
|
4.3
|
93.2
|
1.0
|
C2A
|
E:HEM201
|
4.3
|
93.2
|
1.0
|
CG
|
E:HIS87
|
4.3
|
70.6
|
1.0
|
C2B
|
E:HEM201
|
4.3
|
87.3
|
1.0
|
C2D
|
E:HEM201
|
4.4
|
90.2
|
1.0
|
C3B
|
E:HEM201
|
4.4
|
88.2
|
1.0
|
C3D
|
E:HEM201
|
4.4
|
88.9
|
1.0
|
CE1
|
E:HIS58
|
4.6
|
74.4
|
1.0
|
|
Iron binding site 6 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 6 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:53.6
occ:1.00
|
FE
|
F:HEM201
|
0.0
|
53.6
|
1.0
|
NC
|
F:HEM201
|
2.0
|
51.1
|
1.0
|
NA
|
F:HEM201
|
2.0
|
56.0
|
1.0
|
NB
|
F:HEM201
|
2.1
|
50.4
|
1.0
|
ND
|
F:HEM201
|
2.1
|
57.1
|
1.0
|
NE2
|
F:HIS92
|
2.1
|
52.2
|
1.0
|
CE1
|
F:HIS92
|
2.9
|
49.6
|
1.0
|
C4C
|
F:HEM201
|
3.0
|
52.1
|
1.0
|
C4A
|
F:HEM201
|
3.0
|
57.0
|
1.0
|
C1B
|
F:HEM201
|
3.1
|
49.4
|
1.0
|
C1C
|
F:HEM201
|
3.1
|
50.7
|
1.0
|
C1A
|
F:HEM201
|
3.1
|
58.0
|
1.0
|
C1D
|
F:HEM201
|
3.1
|
58.0
|
1.0
|
C4D
|
F:HEM201
|
3.1
|
60.1
|
1.0
|
C4B
|
F:HEM201
|
3.1
|
48.7
|
1.0
|
CD2
|
F:HIS92
|
3.3
|
51.8
|
1.0
|
CHD
|
F:HEM201
|
3.4
|
55.5
|
1.0
|
CHB
|
F:HEM201
|
3.4
|
53.5
|
1.0
|
CHA
|
F:HEM201
|
3.4
|
59.6
|
1.0
|
CHC
|
F:HEM201
|
3.5
|
49.9
|
1.0
|
ND1
|
F:HIS92
|
4.1
|
50.2
|
1.0
|
NE2
|
F:HIS63
|
4.1
|
59.2
|
1.0
|
C3C
|
F:HEM201
|
4.3
|
50.2
|
1.0
|
C2C
|
F:HEM201
|
4.3
|
50.0
|
1.0
|
C3A
|
F:HEM201
|
4.3
|
58.1
|
1.0
|
C2A
|
F:HEM201
|
4.3
|
58.5
|
1.0
|
C2B
|
F:HEM201
|
4.3
|
48.8
|
1.0
|
CG
|
F:HIS92
|
4.3
|
51.4
|
1.0
|
C2D
|
F:HEM201
|
4.3
|
61.2
|
1.0
|
C3D
|
F:HEM201
|
4.4
|
63.7
|
1.0
|
C3B
|
F:HEM201
|
4.4
|
47.8
|
1.0
|
CE1
|
F:HIS63
|
4.8
|
58.8
|
1.0
|
CG2
|
F:VAL67
|
4.8
|
55.5
|
1.0
|
|
Iron binding site 7 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 7 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:67.6
occ:1.00
|
FE
|
G:HEM201
|
0.0
|
67.6
|
1.0
|
NC
|
G:HEM201
|
2.0
|
71.7
|
1.0
|
NB
|
G:HEM201
|
2.1
|
71.7
|
1.0
|
NA
|
G:HEM201
|
2.1
|
74.0
|
1.0
|
ND
|
G:HEM201
|
2.1
|
70.9
|
1.0
|
NE2
|
G:HIS87
|
2.2
|
68.8
|
1.0
|
C4C
|
G:HEM201
|
3.0
|
70.6
|
1.0
|
C1B
|
G:HEM201
|
3.0
|
74.1
|
1.0
|
C4A
|
G:HEM201
|
3.1
|
74.4
|
1.0
|
C1D
|
G:HEM201
|
3.1
|
70.5
|
1.0
|
C1C
|
G:HEM201
|
3.1
|
70.6
|
1.0
|
C1A
|
G:HEM201
|
3.1
|
73.0
|
1.0
|
C4D
|
G:HEM201
|
3.1
|
71.9
|
1.0
|
C4B
|
G:HEM201
|
3.1
|
72.2
|
1.0
|
CE1
|
G:HIS87
|
3.1
|
71.7
|
1.0
|
CD2
|
G:HIS87
|
3.2
|
71.4
|
1.0
|
CHB
|
G:HEM201
|
3.4
|
74.4
|
1.0
|
CHD
|
G:HEM201
|
3.4
|
72.1
|
1.0
|
CHA
|
G:HEM201
|
3.5
|
71.8
|
1.0
|
CHC
|
G:HEM201
|
3.5
|
71.4
|
1.0
|
NE2
|
G:HIS58
|
4.2
|
71.4
|
1.0
|
ND1
|
G:HIS87
|
4.3
|
73.1
|
1.0
|
C3C
|
G:HEM201
|
4.3
|
69.4
|
1.0
|
C2C
|
G:HEM201
|
4.3
|
70.0
|
1.0
|
C2B
|
G:HEM201
|
4.3
|
74.5
|
1.0
|
C3A
|
G:HEM201
|
4.3
|
74.8
|
1.0
|
C2D
|
G:HEM201
|
4.3
|
69.5
|
1.0
|
C2A
|
G:HEM201
|
4.3
|
74.8
|
1.0
|
CG
|
G:HIS87
|
4.3
|
71.1
|
1.0
|
C3D
|
G:HEM201
|
4.3
|
72.4
|
1.0
|
C3B
|
G:HEM201
|
4.3
|
72.7
|
1.0
|
CE1
|
G:HIS58
|
4.4
|
71.2
|
1.0
|
CG2
|
G:VAL62
|
4.6
|
70.9
|
1.0
|
|
Iron binding site 8 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 8 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:83.3
occ:1.00
|
FE
|
H:HEM201
|
0.0
|
83.3
|
1.0
|
NC
|
H:HEM201
|
2.0
|
87.1
|
1.0
|
NB
|
H:HEM201
|
2.1
|
87.2
|
1.0
|
NA
|
H:HEM201
|
2.1
|
91.0
|
1.0
|
NE2
|
H:HIS92
|
2.1
|
76.7
|
1.0
|
ND
|
H:HEM201
|
2.1
|
90.4
|
1.0
|
CE1
|
H:HIS92
|
3.0
|
78.7
|
1.0
|
C4C
|
H:HEM201
|
3.0
|
86.6
|
1.0
|
C1B
|
H:HEM201
|
3.0
|
87.2
|
1.0
|
CD2
|
H:HIS92
|
3.1
|
79.3
|
1.0
|
C1C
|
H:HEM201
|
3.1
|
85.9
|
1.0
|
C4A
|
H:HEM201
|
3.1
|
90.2
|
1.0
|
C1D
|
H:HEM201
|
3.1
|
89.3
|
1.0
|
C4B
|
H:HEM201
|
3.1
|
85.8
|
1.0
|
C1A
|
H:HEM201
|
3.1
|
93.1
|
1.0
|
C4D
|
H:HEM201
|
3.2
|
92.4
|
1.0
|
CHB
|
H:HEM201
|
3.4
|
89.3
|
1.0
|
CHD
|
H:HEM201
|
3.4
|
88.3
|
1.0
|
CHC
|
H:HEM201
|
3.5
|
86.5
|
1.0
|
CHA
|
H:HEM201
|
3.5
|
93.2
|
1.0
|
ND1
|
H:HIS92
|
4.1
|
79.2
|
1.0
|
CG
|
H:HIS92
|
4.2
|
80.7
|
1.0
|
C3C
|
H:HEM201
|
4.3
|
86.5
|
1.0
|
C2C
|
H:HEM201
|
4.3
|
86.3
|
1.0
|
C2B
|
H:HEM201
|
4.3
|
86.7
|
1.0
|
NE2
|
H:HIS63
|
4.3
|
78.9
|
1.0
|
C3B
|
H:HEM201
|
4.3
|
86.0
|
1.0
|
C3A
|
H:HEM201
|
4.3
|
91.9
|
1.0
|
C2D
|
H:HEM201
|
4.4
|
91.7
|
1.0
|
C2A
|
H:HEM201
|
4.4
|
94.3
|
1.0
|
C3D
|
H:HEM201
|
4.4
|
93.8
|
1.0
|
CE1
|
H:HIS63
|
4.7
|
76.5
|
1.0
|
CG2
|
H:VAL67
|
4.8
|
82.2
|
1.0
|
|
Iron binding site 9 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 9 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe201
b:0.7
occ:1.00
|
FE
|
I:HEM201
|
0.0
|
0.7
|
1.0
|
NC
|
I:HEM201
|
2.1
|
0.1
|
1.0
|
NA
|
I:HEM201
|
2.1
|
0.8
|
1.0
|
NB
|
I:HEM201
|
2.1
|
0.9
|
1.0
|
ND
|
I:HEM201
|
2.1
|
0.3
|
1.0
|
NE2
|
I:HIS87
|
2.3
|
93.8
|
1.0
|
CD2
|
I:HIS87
|
3.0
|
96.5
|
1.0
|
C1B
|
I:HEM201
|
3.1
|
0.0
|
1.0
|
C4C
|
I:HEM201
|
3.1
|
0.7
|
1.0
|
C4A
|
I:HEM201
|
3.1
|
0.8
|
1.0
|
C1D
|
I:HEM201
|
3.1
|
0.2
|
1.0
|
C1C
|
I:HEM201
|
3.1
|
0.8
|
1.0
|
C1A
|
I:HEM201
|
3.1
|
0.7
|
1.0
|
C4D
|
I:HEM201
|
3.1
|
0.4
|
1.0
|
C4B
|
I:HEM201
|
3.1
|
0.2
|
1.0
|
CE1
|
I:HIS87
|
3.4
|
96.2
|
1.0
|
CHB
|
I:HEM201
|
3.4
|
0.1
|
1.0
|
CHD
|
I:HEM201
|
3.4
|
0.7
|
1.0
|
CHA
|
I:HEM201
|
3.5
|
0.0
|
1.0
|
CHC
|
I:HEM201
|
3.5
|
0.3
|
1.0
|
CE1
|
I:HIS58
|
4.0
|
1.0
|
1.0
|
NE2
|
I:HIS58
|
4.1
|
0.5
|
1.0
|
CG
|
I:HIS87
|
4.2
|
97.9
|
1.0
|
C3C
|
I:HEM201
|
4.3
|
0.0
|
1.0
|
C3A
|
I:HEM201
|
4.3
|
0.1
|
1.0
|
C2C
|
I:HEM201
|
4.3
|
0.7
|
1.0
|
C2B
|
I:HEM201
|
4.3
|
0.9
|
1.0
|
C2A
|
I:HEM201
|
4.4
|
0.1
|
1.0
|
C2D
|
I:HEM201
|
4.4
|
0.6
|
1.0
|
C3B
|
I:HEM201
|
4.4
|
0.8
|
1.0
|
C3D
|
I:HEM201
|
4.4
|
1.0
|
1.0
|
ND1
|
I:HIS87
|
4.4
|
97.0
|
1.0
|
CG2
|
I:VAL62
|
4.5
|
0.8
|
1.0
|
|
Iron binding site 10 out
of 12 in 4n7n
Go back to
Iron Binding Sites List in 4n7n
Iron binding site 10 out
of 12 in the Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution.
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Capturing the Haemoglobin Allosteric Transition in A Single Crystal Form; Crystal Structure of Full-Liganded Human Haemoglobin with Phosphate at 2.75 A Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe201
b:0.8
occ:1.00
|
FE
|
J:HEM201
|
0.0
|
0.8
|
1.0
|
NC
|
J:HEM201
|
2.0
|
1.0
|
1.0
|
NA
|
J:HEM201
|
2.1
|
0.8
|
1.0
|
NB
|
J:HEM201
|
2.1
|
0.6
|
1.0
|
ND
|
J:HEM201
|
2.1
|
0.3
|
1.0
|
NE2
|
J:HIS92
|
2.3
|
0.8
|
1.0
|
CE1
|
J:HIS92
|
3.0
|
0.5
|
1.0
|
C4C
|
J:HEM201
|
3.0
|
1.0
|
1.0
|
C1B
|
J:HEM201
|
3.1
|
0.4
|
1.0
|
C4A
|
J:HEM201
|
3.1
|
0.1
|
1.0
|
C1C
|
J:HEM201
|
3.1
|
0.9
|
1.0
|
C1A
|
J:HEM201
|
3.1
|
0.5
|
1.0
|
C4B
|
J:HEM201
|
3.1
|
0.4
|
1.0
|
C1D
|
J:HEM201
|
3.1
|
0.2
|
1.0
|
C4D
|
J:HEM201
|
3.1
|
0.5
|
1.0
|
CHB
|
J:HEM201
|
3.4
|
0.2
|
1.0
|
CD2
|
J:HIS92
|
3.4
|
0.7
|
1.0
|
CHD
|
J:HEM201
|
3.4
|
0.9
|
1.0
|
CHA
|
J:HEM201
|
3.5
|
0.7
|
1.0
|
CHC
|
J:HEM201
|
3.5
|
0.3
|
1.0
|
NE2
|
J:HIS63
|
4.2
|
0.7
|
1.0
|
ND1
|
J:HIS92
|
4.2
|
0.0
|
1.0
|
CG2
|
J:VAL67
|
4.3
|
0.4
|
1.0
|
C3C
|
J:HEM201
|
4.3
|
0.2
|
1.0
|
C2C
|
J:HEM201
|
4.3
|
0.8
|
1.0
|
C3A
|
J:HEM201
|
4.3
|
0.9
|
1.0
|
C2B
|
J:HEM201
|
4.3
|
0.9
|
1.0
|
C2A
|
J:HEM201
|
4.3
|
0.0
|
1.0
|
C3B
|
J:HEM201
|
4.3
|
0.1
|
1.0
|
C2D
|
J:HEM201
|
4.4
|
0.4
|
1.0
|
C3D
|
J:HEM201
|
4.4
|
0.5
|
1.0
|
CG
|
J:HIS92
|
4.4
|
0.9
|
1.0
|
CE1
|
J:HIS63
|
4.5
|
0.6
|
1.0
|
|
Reference:
N.Shibayama,
K.Sugiyama,
J.R.Tame,
S.Y.Park.
Capturing the Hemoglobin Allosteric Transition in A Single Crystal Form J.Am.Chem.Soc. V. 136 5097 2014.
ISSN: ISSN 0002-7863
PubMed: 24635037
DOI: 10.1021/JA500380E
Page generated: Mon Aug 5 07:15:25 2024
|