Iron in PDB 4nos: Human Inducible Nitric Oxide Synthase with Inhibitor
Enzymatic activity of Human Inducible Nitric Oxide Synthase with Inhibitor
All present enzymatic activity of Human Inducible Nitric Oxide Synthase with Inhibitor:
1.14.13.39;
Protein crystallography data
The structure of Human Inducible Nitric Oxide Synthase with Inhibitor, PDB code: 4nos
was solved by
T.O.Fischmann,
P.C.Weber,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.25
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
89.759,
156.672,
190.044,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.9 /
28.9
|
Other elements in 4nos:
The structure of Human Inducible Nitric Oxide Synthase with Inhibitor also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Human Inducible Nitric Oxide Synthase with Inhibitor
(pdb code 4nos). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Human Inducible Nitric Oxide Synthase with Inhibitor, PDB code: 4nos:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 4nos
Go back to
Iron Binding Sites List in 4nos
Iron binding site 1 out
of 4 in the Human Inducible Nitric Oxide Synthase with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Human Inducible Nitric Oxide Synthase with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe510
b:21.8
occ:1.00
|
FE
|
A:HEM510
|
0.0
|
21.8
|
1.0
|
NB
|
A:HEM510
|
2.1
|
24.0
|
1.0
|
ND
|
A:HEM510
|
2.1
|
17.4
|
1.0
|
NC
|
A:HEM510
|
2.1
|
30.4
|
1.0
|
NA
|
A:HEM510
|
2.1
|
23.2
|
1.0
|
SG
|
A:CYS200
|
2.4
|
18.5
|
1.0
|
C1C
|
A:HEM510
|
3.1
|
28.0
|
1.0
|
C1B
|
A:HEM510
|
3.1
|
23.1
|
1.0
|
C4B
|
A:HEM510
|
3.1
|
24.3
|
1.0
|
C1A
|
A:HEM510
|
3.1
|
20.1
|
1.0
|
C4D
|
A:HEM510
|
3.1
|
17.9
|
1.0
|
C4A
|
A:HEM510
|
3.1
|
23.7
|
1.0
|
C1D
|
A:HEM510
|
3.1
|
17.6
|
1.0
|
C4C
|
A:HEM510
|
3.2
|
28.5
|
1.0
|
CHC
|
A:HEM510
|
3.4
|
26.3
|
1.0
|
CHB
|
A:HEM510
|
3.5
|
24.0
|
1.0
|
CHA
|
A:HEM510
|
3.5
|
19.8
|
1.0
|
CHD
|
A:HEM510
|
3.5
|
23.3
|
1.0
|
CB
|
A:CYS200
|
3.6
|
19.5
|
1.0
|
C2
|
A:ITU512
|
4.1
|
34.5
|
1.0
|
S
|
A:ITU512
|
4.2
|
48.8
|
1.0
|
CA
|
A:CYS200
|
4.2
|
17.0
|
1.0
|
C2B
|
A:HEM510
|
4.3
|
21.8
|
1.0
|
C3B
|
A:HEM510
|
4.3
|
23.0
|
1.0
|
C2A
|
A:HEM510
|
4.3
|
22.0
|
1.0
|
C3A
|
A:HEM510
|
4.3
|
21.1
|
1.0
|
C3D
|
A:HEM510
|
4.3
|
16.7
|
1.0
|
C1
|
A:ITU512
|
4.3
|
33.2
|
1.0
|
C2D
|
A:HEM510
|
4.3
|
18.4
|
1.0
|
C2C
|
A:HEM510
|
4.4
|
28.9
|
1.0
|
C3C
|
A:HEM510
|
4.4
|
27.4
|
1.0
|
NE1
|
A:TRP194
|
4.4
|
19.3
|
1.0
|
N
|
A:GLY202
|
4.6
|
22.9
|
1.0
|
C3
|
A:ITU512
|
4.7
|
47.4
|
1.0
|
C
|
A:CYS200
|
4.8
|
18.9
|
1.0
|
N
|
A:ILE201
|
4.9
|
22.0
|
1.0
|
CA
|
A:GLY202
|
4.9
|
20.8
|
1.0
|
|
Iron binding site 2 out
of 4 in 4nos
Go back to
Iron Binding Sites List in 4nos
Iron binding site 2 out
of 4 in the Human Inducible Nitric Oxide Synthase with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Human Inducible Nitric Oxide Synthase with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1010
b:20.5
occ:1.00
|
FE
|
B:HEM1010
|
0.0
|
20.5
|
1.0
|
ND
|
B:HEM1010
|
2.0
|
2.0
|
1.0
|
NB
|
B:HEM1010
|
2.0
|
4.9
|
1.0
|
NA
|
B:HEM1010
|
2.1
|
10.1
|
1.0
|
NC
|
B:HEM1010
|
2.1
|
10.2
|
1.0
|
SG
|
B:CYS200
|
2.4
|
17.3
|
1.0
|
C1B
|
B:HEM1010
|
3.0
|
13.0
|
1.0
|
C4A
|
B:HEM1010
|
3.0
|
9.2
|
1.0
|
C1D
|
B:HEM1010
|
3.1
|
5.9
|
1.0
|
C4D
|
B:HEM1010
|
3.1
|
6.0
|
1.0
|
C1A
|
B:HEM1010
|
3.1
|
8.5
|
1.0
|
C4B
|
B:HEM1010
|
3.1
|
9.2
|
1.0
|
C1C
|
B:HEM1010
|
3.1
|
6.7
|
1.0
|
C4C
|
B:HEM1010
|
3.1
|
8.2
|
1.0
|
CHB
|
B:HEM1010
|
3.3
|
8.5
|
1.0
|
CB
|
B:CYS200
|
3.4
|
12.7
|
1.0
|
CHD
|
B:HEM1010
|
3.4
|
7.2
|
1.0
|
CHA
|
B:HEM1010
|
3.5
|
5.2
|
1.0
|
CHC
|
B:HEM1010
|
3.5
|
6.9
|
1.0
|
S
|
B:ITU1012
|
4.0
|
40.8
|
1.0
|
C2
|
B:ITU1012
|
4.2
|
28.1
|
1.0
|
CA
|
B:CYS200
|
4.2
|
13.4
|
1.0
|
C2B
|
B:HEM1010
|
4.2
|
11.8
|
1.0
|
C3A
|
B:HEM1010
|
4.3
|
13.5
|
1.0
|
C3B
|
B:HEM1010
|
4.3
|
9.4
|
1.0
|
C2D
|
B:HEM1010
|
4.3
|
5.5
|
1.0
|
C3D
|
B:HEM1010
|
4.3
|
7.7
|
1.0
|
C2A
|
B:HEM1010
|
4.3
|
14.6
|
1.0
|
C3C
|
B:HEM1010
|
4.4
|
9.9
|
1.0
|
C2C
|
B:HEM1010
|
4.4
|
9.7
|
1.0
|
NE1
|
B:TRP194
|
4.5
|
10.0
|
1.0
|
C3
|
B:ITU1012
|
4.5
|
41.8
|
1.0
|
C1
|
B:ITU1012
|
4.5
|
34.3
|
1.0
|
N
|
B:GLY202
|
4.7
|
20.0
|
1.0
|
N2
|
B:ITU1012
|
4.8
|
39.3
|
1.0
|
C
|
B:CYS200
|
4.9
|
12.9
|
1.0
|
N
|
B:ILE201
|
4.9
|
13.4
|
1.0
|
|
Iron binding site 3 out
of 4 in 4nos
Go back to
Iron Binding Sites List in 4nos
Iron binding site 3 out
of 4 in the Human Inducible Nitric Oxide Synthase with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Human Inducible Nitric Oxide Synthase with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe2010
b:17.9
occ:1.00
|
FE
|
C:HEM2010
|
0.0
|
17.9
|
1.0
|
NC
|
C:HEM2010
|
2.1
|
22.9
|
1.0
|
NA
|
C:HEM2010
|
2.1
|
16.2
|
1.0
|
ND
|
C:HEM2010
|
2.1
|
21.6
|
1.0
|
NB
|
C:HEM2010
|
2.2
|
26.0
|
1.0
|
SG
|
C:CYS200
|
2.3
|
16.6
|
1.0
|
C1A
|
C:HEM2010
|
3.1
|
19.5
|
1.0
|
C4C
|
C:HEM2010
|
3.1
|
21.1
|
1.0
|
C1C
|
C:HEM2010
|
3.1
|
24.0
|
1.0
|
C4D
|
C:HEM2010
|
3.1
|
18.3
|
1.0
|
C4A
|
C:HEM2010
|
3.1
|
18.6
|
1.0
|
C1D
|
C:HEM2010
|
3.1
|
18.1
|
1.0
|
C1B
|
C:HEM2010
|
3.1
|
20.7
|
1.0
|
C4B
|
C:HEM2010
|
3.2
|
23.5
|
1.0
|
CB
|
C:CYS200
|
3.3
|
15.2
|
1.0
|
CHD
|
C:HEM2010
|
3.4
|
22.5
|
1.0
|
CHA
|
C:HEM2010
|
3.4
|
16.6
|
1.0
|
CHB
|
C:HEM2010
|
3.5
|
19.1
|
1.0
|
CHC
|
C:HEM2010
|
3.5
|
22.5
|
1.0
|
S
|
C:ITU2012
|
3.8
|
43.9
|
1.0
|
C2
|
C:ITU2012
|
3.9
|
37.4
|
1.0
|
C1
|
C:ITU2012
|
4.0
|
43.1
|
1.0
|
CA
|
C:CYS200
|
4.1
|
13.3
|
1.0
|
C2A
|
C:HEM2010
|
4.3
|
19.4
|
1.0
|
C3A
|
C:HEM2010
|
4.3
|
20.1
|
1.0
|
C3C
|
C:HEM2010
|
4.3
|
21.9
|
1.0
|
C2C
|
C:HEM2010
|
4.3
|
22.3
|
1.0
|
C3D
|
C:HEM2010
|
4.3
|
17.4
|
1.0
|
C2D
|
C:HEM2010
|
4.3
|
17.2
|
1.0
|
C2B
|
C:HEM2010
|
4.4
|
22.9
|
1.0
|
C3B
|
C:HEM2010
|
4.4
|
21.6
|
1.0
|
NE1
|
C:TRP194
|
4.4
|
20.0
|
1.0
|
C3
|
C:ITU2012
|
4.6
|
45.2
|
1.0
|
N
|
C:GLY202
|
4.7
|
17.2
|
1.0
|
C
|
C:CYS200
|
4.8
|
10.4
|
1.0
|
N
|
C:ILE201
|
4.9
|
12.8
|
1.0
|
N2
|
C:ITU2012
|
5.0
|
45.0
|
1.0
|
|
Iron binding site 4 out
of 4 in 4nos
Go back to
Iron Binding Sites List in 4nos
Iron binding site 4 out
of 4 in the Human Inducible Nitric Oxide Synthase with Inhibitor
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Human Inducible Nitric Oxide Synthase with Inhibitor within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe3010
b:17.8
occ:1.00
|
FE
|
D:HEM3010
|
0.0
|
17.8
|
1.0
|
ND
|
D:HEM3010
|
2.0
|
2.0
|
1.0
|
NC
|
D:HEM3010
|
2.1
|
17.9
|
1.0
|
NB
|
D:HEM3010
|
2.1
|
10.9
|
1.0
|
NA
|
D:HEM3010
|
2.1
|
14.6
|
1.0
|
SG
|
D:CYS200
|
2.5
|
17.2
|
1.0
|
C1D
|
D:HEM3010
|
3.0
|
10.8
|
1.0
|
C4D
|
D:HEM3010
|
3.0
|
9.7
|
1.0
|
C4C
|
D:HEM3010
|
3.1
|
16.0
|
1.0
|
C1A
|
D:HEM3010
|
3.1
|
13.8
|
1.0
|
C1C
|
D:HEM3010
|
3.1
|
16.8
|
1.0
|
C1B
|
D:HEM3010
|
3.1
|
16.1
|
1.0
|
C4B
|
D:HEM3010
|
3.1
|
15.3
|
1.0
|
C4A
|
D:HEM3010
|
3.2
|
10.8
|
1.0
|
CHD
|
D:HEM3010
|
3.4
|
13.6
|
1.0
|
CHA
|
D:HEM3010
|
3.4
|
9.7
|
1.0
|
CHC
|
D:HEM3010
|
3.5
|
16.2
|
1.0
|
CB
|
D:CYS200
|
3.5
|
16.4
|
1.0
|
CHB
|
D:HEM3010
|
3.5
|
15.1
|
1.0
|
S
|
D:ITU3012
|
3.8
|
38.5
|
1.0
|
C2D
|
D:HEM3010
|
4.2
|
7.0
|
1.0
|
C2
|
D:ITU3012
|
4.2
|
35.8
|
1.0
|
C3D
|
D:HEM3010
|
4.2
|
7.7
|
1.0
|
CA
|
D:CYS200
|
4.3
|
13.6
|
1.0
|
C2A
|
D:HEM3010
|
4.3
|
18.1
|
1.0
|
C3C
|
D:HEM3010
|
4.3
|
18.6
|
1.0
|
C2B
|
D:HEM3010
|
4.3
|
15.7
|
1.0
|
C3B
|
D:HEM3010
|
4.4
|
10.1
|
1.0
|
C2C
|
D:HEM3010
|
4.4
|
19.9
|
1.0
|
C3A
|
D:HEM3010
|
4.4
|
16.8
|
1.0
|
NE1
|
D:TRP194
|
4.4
|
14.0
|
1.0
|
C1
|
D:ITU3012
|
4.4
|
43.9
|
1.0
|
C3
|
D:ITU3012
|
4.5
|
44.0
|
1.0
|
N
|
D:GLY202
|
4.7
|
15.7
|
1.0
|
N
|
D:ILE201
|
4.9
|
14.1
|
1.0
|
N1
|
D:ITU3012
|
4.9
|
39.8
|
1.0
|
C
|
D:CYS200
|
4.9
|
12.5
|
1.0
|
|
Reference:
T.O.Fischmann,
A.Hruza,
X.D.Niu,
J.D.Fossetta,
C.A.Lunn,
E.Dolphin,
A.J.Prongay,
P.Reichert,
D.J.Lundell,
S.K.Narula,
P.C.Weber.
Structural Characterization of Nitric Oxide Synthase Isoforms Reveals Striking Active-Site Conservation. Nat.Struct.Biol. V. 6 233 1999.
ISSN: ISSN 1072-8368
PubMed: 10074942
DOI: 10.1038/6675
Page generated: Mon Aug 5 07:57:27 2024
|