Atomistry » Iron » PDB 4o1w-4oxf » 4o1w
Atomistry »
  Iron »
    PDB 4o1w-4oxf »
      4o1w »

Iron in PDB 4o1w: Crystal Structure of Colwellia Psychrerythraea Cytochrome C

Protein crystallography data

The structure of Crystal Structure of Colwellia Psychrerythraea Cytochrome C, PDB code: 4o1w was solved by P.B.Harvilla, H.N.Wolcott, J.S.Magyar, L.S.Shapiro, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.95 / 2.00
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.280, 45.043, 87.574, 90.00, 90.85, 90.00
R / Rfree (%) 17 / 21.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C (pdb code 4o1w). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C, PDB code: 4o1w:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;

Iron binding site 1 out of 6 in 4o1w

Go back to Iron Binding Sites List in 4o1w
Iron binding site 1 out of 6 in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Colwellia Psychrerythraea Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe101

b:12.8
occ:1.00
FE A:HEM101 0.0 12.8 1.0
NE2 A:HIS18 1.9 15.6 1.0
NB A:HEM101 1.9 13.2 1.0
NC A:HEM101 2.0 16.1 1.0
NA A:HEM101 2.0 14.8 1.0
ND A:HEM101 2.1 16.5 1.0
SD A:MET57 2.3 16.0 1.0
CE1 A:HIS18 2.8 18.4 1.0
C4B A:HEM101 2.9 16.6 1.0
C1B A:HEM101 3.0 14.8 1.0
C4C A:HEM101 3.0 13.2 1.0
C4A A:HEM101 3.0 15.0 1.0
C1C A:HEM101 3.0 16.4 1.0
C1A A:HEM101 3.1 15.2 1.0
CD2 A:HIS18 3.1 15.0 1.0
C1D A:HEM101 3.1 17.3 1.0
C4D A:HEM101 3.1 16.4 1.0
CHC A:HEM101 3.4 14.5 1.0
CHB A:HEM101 3.4 12.2 1.0
CHD A:HEM101 3.4 16.4 1.0
CG A:MET57 3.4 12.0 1.0
CE A:MET57 3.4 15.6 1.0
CHA A:HEM101 3.5 15.9 1.0
ND1 A:HIS18 3.9 16.9 1.0
CG A:HIS18 4.1 16.3 1.0
C3B A:HEM101 4.2 14.9 1.0
C2B A:HEM101 4.2 15.0 1.0
C3C A:HEM101 4.2 14.8 1.0
C2C A:HEM101 4.2 18.6 1.0
C3A A:HEM101 4.2 14.6 1.0
C2A A:HEM101 4.3 13.7 1.0
C2D A:HEM101 4.3 12.1 1.0
C3D A:HEM101 4.3 15.5 1.0
CB A:MET57 4.9 16.2 1.0

Iron binding site 2 out of 6 in 4o1w

Go back to Iron Binding Sites List in 4o1w
Iron binding site 2 out of 6 in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Colwellia Psychrerythraea Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe101

b:14.1
occ:1.00
FE B:HEM101 0.0 14.1 1.0
NB B:HEM101 2.0 14.7 1.0
NE2 B:HIS18 2.0 13.5 1.0
ND B:HEM101 2.0 17.8 1.0
NA B:HEM101 2.0 15.4 1.0
NC B:HEM101 2.0 17.3 1.0
SD B:MET57 2.3 17.2 1.0
CE1 B:HIS18 2.9 12.9 1.0
C4C B:HEM101 3.0 16.1 1.0
C1D B:HEM101 3.0 15.3 1.0
C4B B:HEM101 3.0 18.5 1.0
C1B B:HEM101 3.0 16.4 1.0
C4A B:HEM101 3.0 14.4 1.0
C1A B:HEM101 3.0 16.6 1.0
C4D B:HEM101 3.1 16.8 1.0
CD2 B:HIS18 3.1 15.1 1.0
C1C B:HEM101 3.1 13.7 1.0
CHD B:HEM101 3.3 17.8 1.0
CHB B:HEM101 3.4 14.3 1.0
CE B:MET57 3.4 18.5 1.0
CHA B:HEM101 3.4 14.1 1.0
CG B:MET57 3.4 16.7 1.0
CHC B:HEM101 3.4 17.2 1.0
ND1 B:HIS18 4.0 13.8 1.0
CG B:HIS18 4.2 13.8 1.0
C3B B:HEM101 4.2 21.5 1.0
C3C B:HEM101 4.2 18.4 1.0
C2B B:HEM101 4.2 19.5 1.0
C3A B:HEM101 4.2 16.4 1.0
C2A B:HEM101 4.3 13.7 1.0
C2D B:HEM101 4.3 15.5 1.0
C2C B:HEM101 4.3 20.7 1.0
C3D B:HEM101 4.3 12.4 1.0
CB B:MET57 4.9 17.2 1.0

Iron binding site 3 out of 6 in 4o1w

Go back to Iron Binding Sites List in 4o1w
Iron binding site 3 out of 6 in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Colwellia Psychrerythraea Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe101

b:18.2
occ:1.00
FE C:HEM101 0.0 18.2 1.0
NE2 C:HIS18 1.8 13.2 1.0
NB C:HEM101 2.0 19.2 1.0
ND C:HEM101 2.1 21.0 1.0
NC C:HEM101 2.1 18.6 1.0
NA C:HEM101 2.1 21.4 1.0
SD C:MET57 2.2 19.3 1.0
CE1 C:HIS18 2.6 20.0 1.0
C1B C:HEM101 3.0 19.8 1.0
C4B C:HEM101 3.0 22.5 1.0
CD2 C:HIS18 3.0 20.3 1.0
C4C C:HEM101 3.0 20.2 1.0
C1D C:HEM101 3.1 19.7 1.0
C4A C:HEM101 3.1 15.9 1.0
C4D C:HEM101 3.1 18.1 1.0
C1A C:HEM101 3.1 20.1 1.0
C1C C:HEM101 3.1 25.2 1.0
CG C:MET57 3.3 20.6 1.0
CE C:MET57 3.4 19.2 1.0
CHB C:HEM101 3.4 17.4 1.0
CHD C:HEM101 3.4 15.4 1.0
CHC C:HEM101 3.4 21.6 1.0
CHA C:HEM101 3.5 16.1 1.0
ND1 C:HIS18 3.8 15.1 1.0
CG C:HIS18 4.0 18.8 1.0
C2B C:HEM101 4.2 22.9 1.0
C3B C:HEM101 4.2 24.7 1.0
C3C C:HEM101 4.3 20.2 1.0
C3A C:HEM101 4.3 18.6 1.0
C2D C:HEM101 4.3 23.4 1.0
C3D C:HEM101 4.3 18.8 1.0
C2A C:HEM101 4.3 18.4 1.0
C2C C:HEM101 4.4 22.1 1.0
CB C:MET57 4.7 23.2 1.0

Iron binding site 4 out of 6 in 4o1w

Go back to Iron Binding Sites List in 4o1w
Iron binding site 4 out of 6 in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Colwellia Psychrerythraea Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe101

b:15.4
occ:1.00
FE D:HEM101 0.0 15.4 1.0
NE2 D:HIS18 1.9 15.1 1.0
NB D:HEM101 2.0 15.0 1.0
NC D:HEM101 2.0 16.6 1.0
NA D:HEM101 2.0 14.6 1.0
ND D:HEM101 2.1 17.0 1.0
SD D:MET57 2.3 18.1 1.0
CE1 D:HIS18 2.9 15.0 1.0
C4B D:HEM101 2.9 16.8 1.0
CD2 D:HIS18 3.0 14.7 1.0
C1A D:HEM101 3.0 11.4 1.0
C4C D:HEM101 3.0 17.3 1.0
C1C D:HEM101 3.0 19.0 1.0
C1D D:HEM101 3.0 16.0 1.0
C4A D:HEM101 3.1 12.3 1.0
C4D D:HEM101 3.1 18.5 1.0
C1B D:HEM101 3.1 18.1 1.0
CHC D:HEM101 3.3 16.2 1.0
CHD D:HEM101 3.4 19.3 1.0
CHA D:HEM101 3.4 15.4 1.0
CE D:MET57 3.4 16.0 1.0
CG D:MET57 3.4 16.3 1.0
CHB D:HEM101 3.5 15.3 1.0
ND1 D:HIS18 4.0 14.4 1.0
CG D:HIS18 4.1 16.4 1.0
C3B D:HEM101 4.2 19.9 1.0
C2B D:HEM101 4.2 17.1 1.0
C3C D:HEM101 4.2 19.5 1.0
C2A D:HEM101 4.3 14.2 1.0
C2C D:HEM101 4.3 19.0 1.0
C3A D:HEM101 4.3 18.1 1.0
C2D D:HEM101 4.3 16.2 1.0
C3D D:HEM101 4.3 15.9 1.0
CB D:MET57 4.8 19.6 1.0

Iron binding site 5 out of 6 in 4o1w

Go back to Iron Binding Sites List in 4o1w
Iron binding site 5 out of 6 in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Colwellia Psychrerythraea Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe101

b:14.9
occ:1.00
FE E:HEM101 0.0 14.9 1.0
NB E:HEM101 1.9 15.2 1.0
ND E:HEM101 1.9 12.1 1.0
NE2 E:HIS18 2.0 14.7 1.0
NC E:HEM101 2.0 16.8 1.0
NA E:HEM101 2.1 16.1 1.0
SD E:MET57 2.3 16.9 1.0
C4B E:HEM101 2.8 16.3 1.0
CE1 E:HIS18 2.9 16.2 1.0
C4D E:HEM101 2.9 15.2 1.0
C1C E:HEM101 3.0 14.5 1.0
C1D E:HEM101 3.0 18.9 1.0
C1B E:HEM101 3.0 15.9 1.0
CD2 E:HIS18 3.0 20.7 1.0
C1A E:HEM101 3.0 12.4 1.0
C4C E:HEM101 3.0 16.3 1.0
C4A E:HEM101 3.1 12.5 1.0
CHC E:HEM101 3.2 18.9 1.0
CE E:MET57 3.3 15.7 1.0
CHA E:HEM101 3.3 12.6 1.0
CHD E:HEM101 3.4 14.7 1.0
CG E:MET57 3.5 18.3 1.0
CHB E:HEM101 3.5 15.0 1.0
C3B E:HEM101 4.0 14.8 1.0
ND1 E:HIS18 4.1 17.0 1.0
CG E:HIS18 4.1 18.5 1.0
C2B E:HEM101 4.2 13.2 1.0
C3D E:HEM101 4.2 14.8 1.0
C2D E:HEM101 4.2 14.7 1.0
C2C E:HEM101 4.2 20.0 1.0
C3C E:HEM101 4.2 15.9 1.0
C2A E:HEM101 4.3 13.0 1.0
C3A E:HEM101 4.3 15.0 1.0
CB E:MET57 4.9 20.9 1.0

Iron binding site 6 out of 6 in 4o1w

Go back to Iron Binding Sites List in 4o1w
Iron binding site 6 out of 6 in the Crystal Structure of Colwellia Psychrerythraea Cytochrome C


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of Colwellia Psychrerythraea Cytochrome C within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe101

b:14.5
occ:1.00
FE F:HEM101 0.0 14.5 1.0
NE2 F:HIS18 2.0 18.3 1.0
NB F:HEM101 2.0 15.9 1.0
NC F:HEM101 2.0 16.6 1.0
NA F:HEM101 2.1 14.1 1.0
ND F:HEM101 2.1 16.4 1.0
SD F:MET57 2.3 15.3 1.0
C4B F:HEM101 2.9 19.5 1.0
CE1 F:HIS18 2.9 15.4 1.0
C1C F:HEM101 3.0 15.4 1.0
CD2 F:HIS18 3.0 18.8 1.0
C1A F:HEM101 3.0 13.9 1.0
C4D F:HEM101 3.0 15.4 1.0
C1B F:HEM101 3.1 16.0 1.0
C4C F:HEM101 3.1 16.0 1.0
C1D F:HEM101 3.1 19.4 1.0
C4A F:HEM101 3.1 14.4 1.0
CHC F:HEM101 3.3 16.4 1.0
CE F:MET57 3.3 11.9 1.0
CHA F:HEM101 3.4 13.2 1.0
CG F:MET57 3.4 15.1 1.0
CHB F:HEM101 3.5 13.3 1.0
CHD F:HEM101 3.5 15.4 1.0
ND1 F:HIS18 4.0 17.0 1.0
CG F:HIS18 4.1 20.3 1.0
C3B F:HEM101 4.1 18.9 1.0
C2B F:HEM101 4.2 18.6 1.0
C2C F:HEM101 4.2 20.0 1.0
C3C F:HEM101 4.3 15.8 1.0
C2A F:HEM101 4.3 15.7 1.0
C3A F:HEM101 4.3 13.0 1.0
C3D F:HEM101 4.3 15.7 1.0
C2D F:HEM101 4.3 17.1 1.0
CB F:MET57 4.8 17.7 1.0

Reference:

P.B.Harvilla, H.N.Wolcott, J.S.Magyar. The Structure of Ferricytochrome C552 From the Psychrophilic Marine Bacterium Colwellia Psychrerythraea 34H. Metallomics V. 6 1126 2014.
ISSN: ISSN 1756-5901
PubMed: 24727932
DOI: 10.1039/C4MT00045E
Page generated: Mon Aug 5 08:06:56 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy