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Iron in PDB 4o1z: Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam

Enzymatic activity of Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam

All present enzymatic activity of Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam:
1.14.99.1;

Protein crystallography data

The structure of Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam, PDB code: 4o1z was solved by S.Xu, D.J.Hermanson, S.Banerjee, K.Ghebreselasie, G.M.Clayton, R.M.Garavito, L.J.Marnett, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.55 / 2.40
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 181.326, 181.326, 103.213, 90.00, 90.00, 120.00
R / Rfree (%) 15 / 17.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam (pdb code 4o1z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam, PDB code: 4o1z:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4o1z

Go back to Iron Binding Sites List in 4o1z
Iron binding site 1 out of 2 in the Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe801

b:47.5
occ:1.00
FE A:HEM801 0.0 47.5 1.0
NC A:HEM801 2.0 46.7 1.0
NB A:HEM801 2.1 55.9 1.0
ND A:HEM801 2.1 48.9 1.0
NA A:HEM801 2.1 45.5 1.0
NE2 A:HIS388 2.5 50.9 1.0
C4C A:HEM801 3.0 38.1 1.0
C1C A:HEM801 3.0 56.5 1.0
C1D A:HEM801 3.0 41.4 1.0
C4B A:HEM801 3.1 47.1 1.0
C1B A:HEM801 3.1 46.1 1.0
C4A A:HEM801 3.1 51.8 1.0
C4D A:HEM801 3.1 41.8 1.0
C1A A:HEM801 3.1 51.0 1.0
CD2 A:HIS388 3.2 42.2 1.0
CHD A:HEM801 3.3 41.4 1.0
CHC A:HEM801 3.4 43.2 1.0
CE1 A:HIS388 3.4 57.0 1.0
CHB A:HEM801 3.5 46.8 1.0
CHA A:HEM801 3.5 47.3 1.0
C2C A:HEM801 4.2 50.9 1.0
C3C A:HEM801 4.2 43.6 1.0
C2D A:HEM801 4.3 46.5 1.0
CG A:HIS388 4.3 40.1 1.0
C3B A:HEM801 4.3 45.6 1.0
C2B A:HEM801 4.3 55.6 1.0
C3D A:HEM801 4.4 49.1 1.0
NE2 A:GLN203 4.4 38.2 1.0
C3A A:HEM801 4.4 55.6 1.0
C2A A:HEM801 4.4 46.5 1.0
ND1 A:HIS388 4.4 43.5 1.0
CE1 A:HIS207 4.6 44.1 1.0
NE2 A:HIS207 4.8 49.4 1.0
CG1 A:VAL447 4.9 51.0 1.0
CD A:GLN203 5.0 55.7 1.0

Iron binding site 2 out of 2 in 4o1z

Go back to Iron Binding Sites List in 4o1z
Iron binding site 2 out of 2 in the Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Ovine Cyclooxygenase-1 Complex with Meloxicam within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe801

b:46.6
occ:1.00
FE B:HEM801 0.0 46.6 1.0
NC B:HEM801 2.0 42.8 1.0
NB B:HEM801 2.0 45.8 1.0
ND B:HEM801 2.1 55.8 1.0
NA B:HEM801 2.1 59.8 1.0
NE2 B:HIS388 2.5 57.1 1.0
C4C B:HEM801 3.0 48.8 1.0
C1C B:HEM801 3.0 48.3 1.0
C1D B:HEM801 3.1 51.1 1.0
C4B B:HEM801 3.1 45.0 1.0
C1B B:HEM801 3.1 47.9 1.0
C4D B:HEM801 3.1 52.8 1.0
C4A B:HEM801 3.1 46.9 1.0
C1A B:HEM801 3.1 52.3 1.0
CE1 B:HIS388 3.1 59.2 1.0
CHD B:HEM801 3.4 44.1 1.0
CHC B:HEM801 3.4 40.7 1.0
CD2 B:HIS388 3.4 47.5 1.0
CHB B:HEM801 3.5 56.7 1.0
CHA B:HEM801 3.5 53.4 1.0
NE2 B:GLN203 4.1 45.9 1.0
ND1 B:HIS388 4.1 52.1 1.0
C2C B:HEM801 4.2 49.8 1.0
C3C B:HEM801 4.2 48.6 1.0
C2B B:HEM801 4.3 48.6 1.0
C3B B:HEM801 4.3 54.6 1.0
C2D B:HEM801 4.3 39.5 1.0
C3D B:HEM801 4.3 52.3 1.0
CG B:HIS388 4.3 34.2 1.0
C3A B:HEM801 4.3 61.0 1.0
C2A B:HEM801 4.3 51.9 1.0
NE2 B:HIS207 4.6 56.6 1.0
CE1 B:HIS207 4.7 45.5 1.0
CD B:GLN203 4.8 42.5 1.0
CG B:GLN203 5.0 40.5 1.0

Reference:

S.Xu, D.J.Hermanson, S.Banerjee, K.Ghebreselasie, G.M.Clayton, R.M.Garavito, L.J.Marnett. Oxicams Bind in A Novel Mode to the Cyclooxygenase Active Site Via A Two-Water-Mediated H-Bonding Network. J.Biol.Chem. V. 289 6799 2014.
ISSN: ISSN 0021-9258
PubMed: 24425867
DOI: 10.1074/JBC.M113.517987
Page generated: Mon Aug 5 08:06:56 2024

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