Atomistry » Iron » PDB 4o1w-4oxf » 4ols
Atomistry »
  Iron »
    PDB 4o1w-4oxf »
      4ols »

Iron in PDB 4ols: The Amidase-2 Domain of LYSGH15

Protein crystallography data

The structure of The Amidase-2 Domain of LYSGH15, PDB code: 4ols was solved by J.Gu, S.Ouyang, Z.J.Liu, W.Han, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.57 / 2.27
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 135.400, 135.400, 107.077, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 16.1

Other elements in 4ols:

The structure of The Amidase-2 Domain of LYSGH15 also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Zinc (Zn) 17 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The Amidase-2 Domain of LYSGH15 (pdb code 4ols). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The Amidase-2 Domain of LYSGH15, PDB code: 4ols:

Iron binding site 1 out of 1 in 4ols

Go back to Iron Binding Sites List in 4ols
Iron binding site 1 out of 1 in the The Amidase-2 Domain of LYSGH15


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Amidase-2 Domain of LYSGH15 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe505

b:19.7
occ:0.53
O A:HOH614 2.9 23.6 1.0
O D:HOH733 3.1 21.2 1.0
N D:ASN272 3.1 25.1 1.0
C D:GLY270 3.3 29.3 1.0
CA D:GLY270 3.5 25.4 1.0
N D:SER273 3.5 28.4 1.0
CB D:ASN272 3.6 32.6 1.0
O D:GLY270 3.6 29.8 1.0
CA D:ASN272 3.6 28.7 1.0
N D:ALA271 3.7 28.2 1.0
CA A:ASN317 3.7 26.1 1.0
CB A:ASN317 3.8 23.8 1.0
C D:ASN272 3.8 28.7 1.0
N D:GLY270 4.0 26.0 1.0
N A:ARG318 4.0 23.9 1.0
CD1 A:ILE364 4.1 19.9 1.0
CG2 A:ILE364 4.1 19.2 1.0
CB D:SER273 4.2 23.0 1.0
C D:ALA271 4.3 28.9 1.0
CA D:SER273 4.3 27.1 1.0
C A:ASN317 4.4 25.0 1.0
CG A:ARG318 4.5 22.6 1.0
O A:PRO316 4.5 25.7 1.0
CA D:ALA271 4.6 29.9 1.0
O D:ASN272 4.7 33.8 1.0
OG D:SER273 4.8 26.0 1.0
N A:ASN317 4.9 25.1 1.0
CB A:ILE364 4.9 17.6 1.0
CG1 A:ILE364 4.9 18.4 1.0
CG D:ASN272 4.9 33.7 1.0
OD1 A:ASP361 4.9 22.9 1.0
O A:HOH607 5.0 21.4 1.0

Reference:

J.Gu, F.Feng, X.Feng, C.Sun, L.Lei, W.Ding, F.Niu, L.Jiao, M.Yang, Y.Li, X.Liu, J.Song, Z.Cui, D.Han, C.Du, Y.Yang, S.Ouyang, Z.Liu, W.Han. Structural and Biochemical Characterization Reveals LYSGH15 As An Unprecedented "Ef-Hand-Like" Calcium-Binding Phage Lysin Plos Pathog. V. 10 04109 2014.
ISSN: ISSN 1553-7366
DOI: 10.1371/JOURNAL.PPAT.1004109
Page generated: Mon Aug 5 08:10:03 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy