Iron in PDB 4omf: The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Enzymatic activity of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
All present enzymatic activity of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member:
1.12.98.1;
Protein crystallography data
The structure of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member, PDB code: 4omf
was solved by
S.Vitt,
K.Ma,
E.Warkentin,
J.Moll,
A.Pierik,
S.Shima,
U.Ermler,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.99 /
1.71
|
Space group
|
F 2 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
233.160,
233.160,
233.160,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
15 /
18.1
|
Other elements in 4omf:
The structure of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
17;
Binding sites:
The binding sites of Iron atom in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
(pdb code 4omf). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 17 binding sites of Iron where determined in the
The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member, PDB code: 4omf:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 1 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe301
b:15.8
occ:1.00
|
FE1
|
G:SF4301
|
0.0
|
15.8
|
1.0
|
S4
|
G:SF4301
|
2.3
|
16.1
|
1.0
|
SG
|
G:CYS57
|
2.3
|
15.6
|
1.0
|
S2
|
G:SF4301
|
2.3
|
16.2
|
1.0
|
S3
|
G:SF4301
|
2.3
|
16.5
|
1.0
|
FE4
|
G:SF4301
|
2.6
|
17.3
|
1.0
|
FE2
|
G:SF4301
|
2.6
|
16.8
|
1.0
|
FE3
|
G:SF4301
|
2.7
|
16.5
|
1.0
|
CB
|
G:CYS57
|
3.3
|
12.7
|
1.0
|
N
|
G:CYS57
|
3.8
|
16.8
|
1.0
|
S1
|
G:SF4301
|
3.8
|
16.5
|
1.0
|
NE2
|
A:HIS150
|
3.9
|
15.7
|
1.0
|
CA
|
G:CYS57
|
4.1
|
15.4
|
1.0
|
OD2
|
G:ASP60
|
4.1
|
23.9
|
1.0
|
N
|
G:GLY59
|
4.3
|
14.4
|
1.0
|
C
|
G:CYS57
|
4.6
|
15.4
|
1.0
|
CA
|
G:GLY59
|
4.6
|
13.2
|
1.0
|
SG
|
G:CYS132
|
4.7
|
17.2
|
1.0
|
CD2
|
A:HIS150
|
4.7
|
16.4
|
1.0
|
N
|
G:THR58
|
4.8
|
14.3
|
1.0
|
SG
|
G:CYS171
|
4.8
|
15.8
|
1.0
|
CE1
|
A:HIS150
|
4.8
|
16.0
|
1.0
|
C
|
G:GLY56
|
4.8
|
17.3
|
1.0
|
O
|
G:HOH410
|
4.8
|
15.4
|
1.0
|
CG
|
G:ASP60
|
5.0
|
24.2
|
1.0
|
|
Iron binding site 2 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 2 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe301
b:16.8
occ:1.00
|
FE2
|
G:SF4301
|
0.0
|
16.8
|
1.0
|
S3
|
G:SF4301
|
2.3
|
16.5
|
1.0
|
S4
|
G:SF4301
|
2.3
|
16.1
|
1.0
|
S1
|
G:SF4301
|
2.3
|
16.5
|
1.0
|
SG
|
G:CYS132
|
2.3
|
17.2
|
1.0
|
FE1
|
G:SF4301
|
2.6
|
15.8
|
1.0
|
FE3
|
G:SF4301
|
2.7
|
16.5
|
1.0
|
FE4
|
G:SF4301
|
2.8
|
17.3
|
1.0
|
CB
|
G:CYS132
|
3.2
|
15.8
|
1.0
|
N
|
G:CYS132
|
3.8
|
15.4
|
1.0
|
S2
|
G:SF4301
|
3.9
|
16.2
|
1.0
|
CA
|
G:CYS132
|
4.0
|
13.2
|
1.0
|
O
|
G:HOH422
|
4.1
|
14.7
|
1.0
|
O
|
G:HOH410
|
4.1
|
15.4
|
1.0
|
SG
|
G:CYS171
|
4.5
|
15.8
|
1.0
|
OD2
|
G:ASP60
|
4.6
|
23.9
|
1.0
|
SG
|
G:CYS137
|
4.7
|
16.6
|
1.0
|
CE2
|
G:PHE138
|
4.7
|
16.2
|
1.0
|
CB
|
G:CYS137
|
4.7
|
13.6
|
1.0
|
SG
|
G:CYS57
|
4.8
|
15.6
|
1.0
|
CD2
|
G:PHE138
|
4.8
|
13.1
|
1.0
|
N
|
G:CYS57
|
5.0
|
16.8
|
1.0
|
|
Iron binding site 3 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 3 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe301
b:16.5
occ:1.00
|
FE3
|
G:SF4301
|
0.0
|
16.5
|
1.0
|
S2
|
G:SF4301
|
2.3
|
16.2
|
1.0
|
S4
|
G:SF4301
|
2.3
|
16.1
|
1.0
|
SG
|
G:CYS171
|
2.3
|
15.8
|
1.0
|
S1
|
G:SF4301
|
2.3
|
16.5
|
1.0
|
FE1
|
G:SF4301
|
2.7
|
15.8
|
1.0
|
FE2
|
G:SF4301
|
2.7
|
16.8
|
1.0
|
FE4
|
G:SF4301
|
2.7
|
17.3
|
1.0
|
CB
|
G:CYS171
|
3.4
|
13.1
|
1.0
|
CA
|
G:CYS171
|
3.5
|
13.7
|
1.0
|
C
|
G:CYS171
|
3.9
|
14.6
|
1.0
|
S3
|
G:SF4301
|
3.9
|
16.5
|
1.0
|
NE2
|
A:HIS150
|
4.1
|
15.7
|
1.0
|
CD2
|
A:HIS150
|
4.2
|
16.4
|
1.0
|
N
|
G:PRO172
|
4.3
|
14.9
|
1.0
|
O
|
G:CYS171
|
4.4
|
16.1
|
1.0
|
O
|
G:GLY170
|
4.6
|
15.6
|
1.0
|
SG
|
G:CYS137
|
4.6
|
16.6
|
1.0
|
SG
|
G:CYS57
|
4.6
|
15.6
|
1.0
|
CA
|
G:PRO172
|
4.6
|
15.5
|
1.0
|
SG
|
G:CYS132
|
4.7
|
17.2
|
1.0
|
NE
|
A:ARG61
|
4.7
|
15.2
|
1.0
|
N
|
G:CYS171
|
4.8
|
15.8
|
1.0
|
OD1
|
G:ASP60
|
4.9
|
32.9
|
1.0
|
OD2
|
G:ASP60
|
4.9
|
23.9
|
1.0
|
|
Iron binding site 4 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 4 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe301
b:17.3
occ:1.00
|
FE4
|
G:SF4301
|
0.0
|
17.3
|
1.0
|
OD2
|
G:ASP60
|
2.2
|
23.9
|
1.0
|
S1
|
G:SF4301
|
2.3
|
16.5
|
1.0
|
S2
|
G:SF4301
|
2.3
|
16.2
|
1.0
|
S3
|
G:SF4301
|
2.3
|
16.5
|
1.0
|
FE1
|
G:SF4301
|
2.6
|
15.8
|
1.0
|
OD1
|
G:ASP60
|
2.7
|
32.9
|
1.0
|
FE3
|
G:SF4301
|
2.7
|
16.5
|
1.0
|
FE2
|
G:SF4301
|
2.8
|
16.8
|
1.0
|
CG
|
G:ASP60
|
2.8
|
24.2
|
1.0
|
O
|
G:HOH422
|
3.7
|
14.7
|
1.0
|
S4
|
G:SF4301
|
3.9
|
16.1
|
1.0
|
N
|
G:ASP60
|
4.1
|
16.0
|
1.0
|
CB
|
G:ASP60
|
4.2
|
14.6
|
1.0
|
CA
|
G:GLY130
|
4.5
|
16.6
|
1.0
|
SG
|
G:CYS57
|
4.5
|
15.6
|
1.0
|
CA
|
G:PRO172
|
4.6
|
15.5
|
1.0
|
O
|
G:GLY170
|
4.6
|
15.6
|
1.0
|
CA
|
G:ASP60
|
4.7
|
14.8
|
1.0
|
CB
|
G:PRO172
|
4.7
|
13.6
|
1.0
|
CG
|
G:GLU102
|
4.7
|
15.7
|
1.0
|
C
|
G:GLY59
|
4.8
|
19.4
|
1.0
|
N
|
G:SER131
|
4.9
|
15.3
|
1.0
|
CA
|
G:CYS171
|
4.9
|
13.7
|
1.0
|
O
|
G:PHE129
|
4.9
|
19.3
|
1.0
|
SG
|
G:CYS171
|
4.9
|
15.8
|
1.0
|
N
|
G:GLY59
|
4.9
|
14.4
|
1.0
|
C
|
G:GLY130
|
4.9
|
13.6
|
1.0
|
SG
|
G:CYS132
|
5.0
|
17.2
|
1.0
|
N
|
G:CYS132
|
5.0
|
15.4
|
1.0
|
CA
|
G:GLY59
|
5.0
|
13.2
|
1.0
|
|
Iron binding site 5 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 5 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe302
b:15.8
occ:1.00
|
FE1
|
G:SF4302
|
0.0
|
15.8
|
1.0
|
S4
|
G:SF4302
|
2.3
|
15.1
|
1.0
|
S2
|
G:SF4302
|
2.3
|
13.6
|
1.0
|
S3
|
G:SF4302
|
2.3
|
17.0
|
1.0
|
SG
|
G:CYS249
|
2.3
|
17.1
|
1.0
|
FE2
|
G:SF4302
|
2.7
|
15.3
|
1.0
|
FE3
|
G:SF4302
|
2.7
|
16.4
|
1.0
|
FE4
|
G:SF4302
|
2.7
|
16.1
|
1.0
|
CB
|
G:CYS249
|
3.4
|
17.2
|
1.0
|
CA
|
G:CYS249
|
3.7
|
14.5
|
1.0
|
S1
|
G:SF4302
|
3.9
|
15.4
|
1.0
|
N
|
G:GLY207
|
3.9
|
18.9
|
1.0
|
N
|
G:ILE250
|
4.0
|
16.1
|
1.0
|
CA
|
G:GLY207
|
4.1
|
16.9
|
1.0
|
N
|
G:LYS251
|
4.1
|
15.2
|
1.0
|
C
|
G:CYS249
|
4.3
|
14.7
|
1.0
|
CD1
|
G:LEU244
|
4.6
|
16.8
|
1.0
|
CB
|
G:ALA234
|
4.6
|
12.6
|
1.0
|
CA
|
G:LYS251
|
4.7
|
16.3
|
1.0
|
C
|
G:CYS206
|
4.8
|
20.6
|
1.0
|
N
|
G:CYS252
|
4.9
|
14.7
|
1.0
|
SG
|
G:CYS255
|
4.9
|
16.2
|
1.0
|
SG
|
G:CYS230
|
4.9
|
16.2
|
1.0
|
N
|
G:CYS249
|
5.0
|
13.4
|
1.0
|
|
Iron binding site 6 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 6 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe302
b:15.3
occ:1.00
|
FE2
|
G:SF4302
|
0.0
|
15.3
|
1.0
|
S1
|
G:SF4302
|
2.3
|
15.4
|
1.0
|
S3
|
G:SF4302
|
2.3
|
17.0
|
1.0
|
S4
|
G:SF4302
|
2.3
|
15.1
|
1.0
|
SG
|
G:CYS255
|
2.4
|
16.2
|
1.0
|
FE4
|
G:SF4302
|
2.7
|
16.1
|
1.0
|
FE3
|
G:SF4302
|
2.7
|
16.4
|
1.0
|
FE1
|
G:SF4302
|
2.7
|
15.8
|
1.0
|
CB
|
G:CYS255
|
3.3
|
15.1
|
1.0
|
N
|
G:CYS255
|
3.8
|
14.9
|
1.0
|
S2
|
G:SF4302
|
3.9
|
13.6
|
1.0
|
CA
|
G:GLY207
|
4.0
|
16.9
|
1.0
|
CA
|
G:CYS255
|
4.2
|
13.0
|
1.0
|
N
|
G:GLY207
|
4.3
|
18.9
|
1.0
|
CD1
|
G:LEU235
|
4.5
|
13.6
|
1.0
|
N
|
G:ILE254
|
4.6
|
14.7
|
1.0
|
SG
|
G:CYS252
|
4.7
|
16.3
|
1.0
|
SG
|
G:CYS249
|
4.8
|
17.1
|
1.0
|
N
|
G:GLY253
|
4.8
|
14.7
|
1.0
|
C
|
G:CYS206
|
4.8
|
20.6
|
1.0
|
SG
|
G:CYS230
|
4.8
|
16.2
|
1.0
|
C
|
G:GLY253
|
4.9
|
16.9
|
1.0
|
C
|
G:ILE254
|
5.0
|
13.7
|
1.0
|
O
|
G:CYS206
|
5.0
|
18.4
|
1.0
|
|
Iron binding site 7 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 7 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe302
b:16.4
occ:1.00
|
FE3
|
G:SF4302
|
0.0
|
16.4
|
1.0
|
S2
|
G:SF4302
|
2.3
|
13.6
|
1.0
|
S4
|
G:SF4302
|
2.3
|
15.1
|
1.0
|
S1
|
G:SF4302
|
2.3
|
15.4
|
1.0
|
SG
|
G:CYS230
|
2.4
|
16.2
|
1.0
|
FE2
|
G:SF4302
|
2.7
|
15.3
|
1.0
|
FE1
|
G:SF4302
|
2.7
|
15.8
|
1.0
|
FE4
|
G:SF4302
|
2.7
|
16.1
|
1.0
|
CB
|
G:CYS230
|
3.3
|
15.7
|
1.0
|
S3
|
G:SF4302
|
3.9
|
17.0
|
1.0
|
CA
|
G:CYS230
|
4.0
|
13.5
|
1.0
|
CB
|
G:ALA234
|
4.1
|
12.6
|
1.0
|
OG1
|
G:THR232
|
4.1
|
14.2
|
1.0
|
CD1
|
G:LEU235
|
4.6
|
13.6
|
1.0
|
CG
|
G:LEU235
|
4.7
|
14.1
|
1.0
|
O
|
G:HOH414
|
4.7
|
14.7
|
1.0
|
C
|
G:CYS230
|
4.7
|
14.8
|
1.0
|
SG
|
G:CYS252
|
4.8
|
16.3
|
1.0
|
SG
|
G:CYS255
|
4.8
|
16.2
|
1.0
|
N
|
G:GLN231
|
4.8
|
13.1
|
1.0
|
N
|
G:ALA234
|
4.8
|
14.1
|
1.0
|
CB
|
G:CYS255
|
4.9
|
15.1
|
1.0
|
SG
|
G:CYS249
|
5.0
|
17.1
|
1.0
|
CA
|
G:ALA234
|
5.0
|
16.9
|
1.0
|
|
Iron binding site 8 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 8 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe302
b:16.1
occ:1.00
|
FE4
|
G:SF4302
|
0.0
|
16.1
|
1.0
|
S1
|
G:SF4302
|
2.3
|
15.4
|
1.0
|
S2
|
G:SF4302
|
2.3
|
13.6
|
1.0
|
S3
|
G:SF4302
|
2.3
|
17.0
|
1.0
|
SG
|
G:CYS252
|
2.4
|
16.3
|
1.0
|
FE2
|
G:SF4302
|
2.7
|
15.3
|
1.0
|
FE3
|
G:SF4302
|
2.7
|
16.4
|
1.0
|
FE1
|
G:SF4302
|
2.7
|
15.8
|
1.0
|
N
|
G:CYS252
|
3.7
|
14.7
|
1.0
|
CB
|
G:CYS252
|
3.7
|
12.6
|
1.0
|
N
|
G:GLY253
|
3.9
|
14.7
|
1.0
|
S4
|
G:SF4302
|
3.9
|
15.1
|
1.0
|
CA
|
G:CYS252
|
4.1
|
17.6
|
1.0
|
O
|
G:HOH414
|
4.1
|
14.7
|
1.0
|
N
|
G:ILE254
|
4.2
|
14.7
|
1.0
|
CG1
|
G:ILE250
|
4.2
|
12.2
|
1.0
|
C
|
G:CYS252
|
4.3
|
14.7
|
1.0
|
N
|
G:LYS251
|
4.5
|
15.2
|
1.0
|
SG
|
G:CYS249
|
4.7
|
17.1
|
1.0
|
SG
|
G:CYS230
|
4.7
|
16.2
|
1.0
|
CA
|
G:GLY253
|
4.8
|
14.8
|
1.0
|
C
|
G:LYS251
|
4.8
|
18.6
|
1.0
|
CB
|
G:ILE254
|
4.8
|
14.7
|
1.0
|
SG
|
G:CYS255
|
4.8
|
16.2
|
1.0
|
N
|
G:ILE250
|
4.8
|
16.1
|
1.0
|
N
|
G:CYS255
|
4.8
|
14.9
|
1.0
|
CD1
|
G:ILE250
|
4.9
|
14.5
|
1.0
|
C
|
G:GLY253
|
4.9
|
16.9
|
1.0
|
CA
|
G:LYS251
|
5.0
|
16.3
|
1.0
|
CA
|
G:ILE254
|
5.0
|
15.5
|
1.0
|
|
Iron binding site 9 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 9 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe303
b:17.0
occ:1.00
|
FE1
|
G:SF4303
|
0.0
|
17.0
|
1.0
|
S2
|
G:SF4303
|
2.3
|
15.5
|
1.0
|
S4
|
G:SF4303
|
2.3
|
16.2
|
1.0
|
S3
|
G:SF4303
|
2.3
|
15.6
|
1.0
|
SG
|
G:CYS226
|
2.3
|
16.0
|
1.0
|
FE2
|
G:SF4303
|
2.7
|
16.4
|
1.0
|
FE4
|
G:SF4303
|
2.7
|
17.7
|
1.0
|
FE3
|
G:SF4303
|
2.8
|
17.0
|
1.0
|
CB
|
G:CYS226
|
3.2
|
15.7
|
1.0
|
N
|
G:CYS226
|
3.9
|
14.7
|
1.0
|
S1
|
G:SF4303
|
3.9
|
15.8
|
1.0
|
CA
|
G:CYS226
|
4.2
|
16.5
|
1.0
|
CG
|
G:PRO242
|
4.5
|
16.5
|
1.0
|
CD
|
G:PRO242
|
4.6
|
18.4
|
1.0
|
N
|
G:THR225
|
4.7
|
17.2
|
1.0
|
SG
|
G:CYS223
|
4.7
|
16.6
|
1.0
|
N
|
G:GLY224
|
4.7
|
15.1
|
1.0
|
CB
|
G:PRO242
|
4.8
|
15.1
|
1.0
|
SG
|
G:CYS220
|
4.8
|
16.4
|
1.0
|
CD1
|
G:LEU210
|
4.8
|
19.2
|
1.0
|
SG
|
G:CYS259
|
4.9
|
17.3
|
1.0
|
CD2
|
G:LEU210
|
4.9
|
14.5
|
1.0
|
|
Iron binding site 10 out
of 17 in 4omf
Go back to
Iron Binding Sites List in 4omf
Iron binding site 10 out
of 17 in the The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe303
b:16.4
occ:1.00
|
FE2
|
G:SF4303
|
0.0
|
16.4
|
1.0
|
S3
|
G:SF4303
|
2.3
|
15.6
|
1.0
|
S4
|
G:SF4303
|
2.3
|
16.2
|
1.0
|
S1
|
G:SF4303
|
2.3
|
15.8
|
1.0
|
SG
|
G:CYS220
|
2.4
|
16.4
|
1.0
|
FE4
|
G:SF4303
|
2.7
|
17.7
|
1.0
|
FE1
|
G:SF4303
|
2.7
|
17.0
|
1.0
|
FE3
|
G:SF4303
|
2.7
|
17.0
|
1.0
|
CB
|
G:CYS220
|
3.4
|
14.3
|
1.0
|
CA
|
G:CYS220
|
3.8
|
15.0
|
1.0
|
S2
|
G:SF4303
|
3.9
|
15.5
|
1.0
|
N
|
G:ILE221
|
4.0
|
15.9
|
1.0
|
N
|
G:GLY222
|
4.1
|
17.5
|
1.0
|
CG1
|
G:VAL214
|
4.3
|
16.4
|
1.0
|
C
|
G:CYS220
|
4.4
|
14.6
|
1.0
|
CD
|
G:PRO242
|
4.5
|
18.4
|
1.0
|
CA
|
G:GLY222
|
4.7
|
18.1
|
1.0
|
CG
|
G:PRO242
|
4.8
|
16.5
|
1.0
|
SG
|
G:CYS259
|
4.9
|
17.3
|
1.0
|
N
|
G:CYS223
|
4.9
|
15.9
|
1.0
|
SG
|
G:CYS226
|
4.9
|
16.0
|
1.0
|
|
Reference:
S.Vitt,
K.Ma,
E.Warkentin,
J.Moll,
A.J.Pierik,
S.Shima,
U.Ermler.
The F420-Reducing [Nife]-Hydrogenase Complex From Methanothermobacter Marburgensis, the First X-Ray Structure of A Group 3 Family Member. J.Mol.Biol. V. 426 2813 2014.
ISSN: ISSN 0022-2836
PubMed: 24887099
DOI: 10.1016/J.JMB.2014.05.024
Page generated: Mon Aug 5 08:10:04 2024
|