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Iron in PDB 4pbu: Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Enzymatic activity of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
All present enzymatic activity of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State:
1.10.3.9;
1.10.3.9;
Protein crystallography data
The structure of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State, PDB code: 4pbu
was solved by
C.Kupitz,
S.Basu,
I.Grotjohann,
R.Fromme,
N.Zatsepin,
K.N.Rendek,
M.Hunter,
R.L.Shoeman,
T.A.White,
D.Wang,
D.James,
J.H.Yang,
D.E.Cobb,
B.Reeder,
R.G.Sierra,
H.Liu,
A.Barty,
A.Aquila,
D.Deponte,
R.A.Kirian,
S.Bari,
J.J.Bergkamp,
K.Beyerlein,
M.J.Bogan,
C.Caleman,
T.-C.Chao,
C.E.Conrad,
K.M.Davis,
H.Fleckenstein,
L.Galli,
S.P.Hau-Riege,
S.Kassemeyer,
H.Laksmono,
M.Liang,
L.Lomb,
S.Marchesini,
A.V.Martin,
M.Messerschmidt,
D.Milathianaki,
K.Nass,
A.Ros,
S.Roy-Chowdhury,
K.Schmidt,
M.Seibert,
J.Steinbrener,
F.Stellato,
L.Yan,
C.Yoon,
T.A.Moore,
A.L.Moore,
Y.Pushkar,
G.J.Williams,
S.Boutet,
R.B.Doak,
U.Weierstall,
M.Frank,
H.N.Chapman,
J.C.H.Spence,
P.Fromme,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 100.64 / 5.00 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 133.250, 226.260, 307.090, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 26.1 / 26.2 |
Other elements in 4pbu:
The structure of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State also contains other interesting chemical elements:
| Magnesium | (Mg) | 71 atoms |
| Manganese | (Mn) | 8 atoms |
| Chlorine | (Cl) | 6 atoms |
| Calcium | (Ca) | 9 atoms |
Iron Binding Sites:
The binding sites of Iron atom in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
(pdb code 4pbu). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 6 binding sites of Iron where determined in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State, PDB code: 4pbu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
In total 6 binding sites of Iron where determined in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State, PDB code: 4pbu:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6;
Iron binding site 1 out of 6 in 4pbu
Go back to
Iron Binding Sites List in 4pbu
Iron binding site 1 out
of 6 in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State within 5.0Å range:
|
Iron binding site 2 out of 6 in 4pbu
Go back to
Iron Binding Sites List in 4pbu
Iron binding site 2 out
of 6 in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State within 5.0Å range:
|
Iron binding site 3 out of 6 in 4pbu
Go back to
Iron Binding Sites List in 4pbu
Iron binding site 3 out
of 6 in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State within 5.0Å range:
|
Iron binding site 4 out of 6 in 4pbu
Go back to
Iron Binding Sites List in 4pbu
Iron binding site 4 out
of 6 in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State within 5.0Å range:
|
Iron binding site 5 out of 6 in 4pbu
Go back to
Iron Binding Sites List in 4pbu
Iron binding site 5 out
of 6 in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State within 5.0Å range:
|
Iron binding site 6 out of 6 in 4pbu
Go back to
Iron Binding Sites List in 4pbu
Iron binding site 6 out
of 6 in the Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser the S1 State within 5.0Å range:
|
Reference:
C.Kupitz,
S.Basu,
I.Grotjohann,
R.Fromme,
N.A.Zatsepin,
K.N.Rendek,
M.S.Hunter,
R.L.Shoeman,
T.A.White,
D.Wang,
D.James,
J.H.Yang,
D.E.Cobb,
B.Reeder,
R.G.Sierra,
H.Liu,
A.Barty,
A.L.Aquila,
D.Deponte,
R.A.Kirian,
S.Bari,
J.J.Bergkamp,
K.R.Beyerlein,
M.J.Bogan,
C.Caleman,
T.C.Chao,
C.E.Conrad,
K.M.Davis,
H.Fleckenstein,
L.Galli,
S.P.Hau-Riege,
S.Kassemeyer,
H.Laksmono,
M.Liang,
L.Lomb,
S.Marchesini,
A.V.Martin,
M.Messerschmidt,
D.Milathianaki,
K.Nass,
A.Ros,
S.Roy-Chowdhury,
K.Schmidt,
M.Seibert,
J.Steinbrener,
F.Stellato,
L.Yan,
C.Yoon,
T.A.Moore,
A.L.Moore,
Y.Pushkar,
G.J.Williams,
S.Boutet,
R.B.Doak,
U.Weierstall,
M.Frank,
H.N.Chapman,
J.C.Spence,
P.Fromme.
Serial Time-Resolved Crystallography of Photosystem II Using A Femtosecond X-Ray Laser. Nature V. 513 261 2014.
ISSN: ESSN 1476-4687
PubMed: 25043005
DOI: 10.1038/NATURE13453
Page generated: Tue Aug 5 13:38:15 2025
ISSN: ESSN 1476-4687
PubMed: 25043005
DOI: 10.1038/NATURE13453
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