Atomistry » Iron » PDB 4oyn-4q1o » 4pjy
Atomistry »
  Iron »
    PDB 4oyn-4q1o »
      4pjy »

Iron in PDB 4pjy: Azide Bound Cysteine Dioxygenase at pH 6.2

Enzymatic activity of Azide Bound Cysteine Dioxygenase at pH 6.2

All present enzymatic activity of Azide Bound Cysteine Dioxygenase at pH 6.2:
1.13.11.20;

Protein crystallography data

The structure of Azide Bound Cysteine Dioxygenase at pH 6.2, PDB code: 4pjy was solved by C.M.Driggers, P.A.Karplus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.29 / 1.50
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 57.600, 57.600, 122.400, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 21.2

Iron Binding Sites:

The binding sites of Iron atom in the Azide Bound Cysteine Dioxygenase at pH 6.2 (pdb code 4pjy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Azide Bound Cysteine Dioxygenase at pH 6.2, PDB code: 4pjy:

Iron binding site 1 out of 1 in 4pjy

Go back to Iron Binding Sites List in 4pjy
Iron binding site 1 out of 1 in the Azide Bound Cysteine Dioxygenase at pH 6.2


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Azide Bound Cysteine Dioxygenase at pH 6.2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:18.0
occ:1.00
N1 A:AZI502 2.0 28.1 1.0
NE2 A:HIS86 2.0 19.0 1.0
NE2 A:HIS88 2.1 20.0 1.0
NE2 A:HIS140 2.1 20.4 1.0
O A:HOH608 2.3 37.1 1.0
N2 A:AZI502 2.6 51.6 1.0
CE1 A:HIS88 2.9 19.3 1.0
CD2 A:HIS86 3.0 19.5 1.0
CE1 A:HIS86 3.0 18.4 1.0
CE1 A:HIS140 3.1 19.1 1.0
CD2 A:HIS140 3.1 17.1 1.0
CD2 A:HIS88 3.2 20.4 1.0
N3 A:AZI502 3.5 60.6 1.0
OH A:TYR157 4.1 27.3 1.0
ND1 A:HIS88 4.1 20.2 1.0
ND1 A:HIS86 4.1 18.5 1.0
CG A:HIS86 4.1 19.1 1.0
ND1 A:HIS140 4.2 17.8 1.0
CG A:HIS140 4.2 19.5 1.0
CG A:HIS88 4.3 21.9 1.0
SG A:CYS93 4.3 22.4 1.0
CG2 A:ILE133 4.7 21.4 1.0
CG2 A:VAL142 4.9 23.0 1.0
CZ A:TYR157 5.0 24.9 1.0

Reference:

C.M.Driggers, K.M.Kean, L.L.Hirschberger, R.B.Cooley, M.H.Stipanuk, P.A.Karplus. Structure-Based Insights Into the Role of the Cys-Tyr Crosslink and Inhibitor Recognition By Mammalian Cysteine Dioxygenase. J. Mol. Biol. V. 428 3999 2016.
ISSN: ESSN 1089-8638
PubMed: 27477048
DOI: 10.1016/J.JMB.2016.07.012
Page generated: Mon Aug 5 08:27:16 2024

Last articles

Ca in 5W4T
Ca in 5W1C
Ca in 5W0U
Ca in 5W78
Ca in 5W1F
Ca in 5W4S
Ca in 5W4C
Ca in 5W3Q
Ca in 5W2Y
Ca in 5W2W
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy