Atomistry » Iron » PDB 4q4u-4r21 » 4qoq
Atomistry »
  Iron »
    PDB 4q4u-4r21 »
      4qoq »

Iron in PDB 4qoq: Structure of Bacillus Pumilus Catalase with Guaiacol Bound

Enzymatic activity of Structure of Bacillus Pumilus Catalase with Guaiacol Bound

All present enzymatic activity of Structure of Bacillus Pumilus Catalase with Guaiacol Bound:
1.11.1.6;

Protein crystallography data

The structure of Structure of Bacillus Pumilus Catalase with Guaiacol Bound, PDB code: 4qoq was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 103.35 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 91.790, 108.109, 103.409, 90.00, 91.98, 90.00
R / Rfree (%) 16.2 / 19

Other elements in 4qoq:

The structure of Structure of Bacillus Pumilus Catalase with Guaiacol Bound also contains other interesting chemical elements:

Chlorine (Cl) 6 atoms
Sodium (Na) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound (pdb code 4qoq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound, PDB code: 4qoq:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 1 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:20.6
occ:0.50
 FE A:HEM501 0.0 20.6 0.5
FE A:HEM502 0.5 13.7 0.5
NA A:HEM502 1.6 13.4 0.5
ND A:HEM501 1.9 16.0 0.5
ND A:HEM502 2.0 13.3 0.5
NA A:HEM501 2.0 16.3 0.5
NC A:HEM501 2.1 16.3 0.5
NB A:HEM501 2.1 16.4 0.5
NB A:HEM502 2.1 13.8 0.5
OH A:TYR340 2.2 17.3 1.0
NC A:HEM502 2.5 13.6 0.5
C1A A:HEM502 2.6 12.9 0.5
C4A A:HEM502 2.7 13.2 0.5
C4D A:HEM502 2.9 13.0 0.5
C1D A:HEM501 2.9 14.9 0.5
C4D A:HEM501 2.9 15.1 0.5
C1B A:HEM502 2.9 13.7 0.5
C4C A:HEM501 3.0 15.7 0.5
C4B A:HEM501 3.1 16.2 0.5
C1A A:HEM501 3.1 15.7 0.5
C1C A:HEM501 3.1 16.0 0.5
C1B A:HEM501 3.1 16.3 0.5
CHA A:HEM502 3.1 12.7 0.5
C4A A:HEM501 3.1 16.4 0.5
C4B A:HEM502 3.2 14.4 0.5
CZ A:TYR340 3.2 16.4 1.0
C1D A:HEM502 3.2 13.3 0.5
CHB A:HEM502 3.2 13.4 0.5
CHD A:HEM501 3.4 15.3 0.5
CHA A:HEM501 3.4 15.1 0.5
C1C A:HEM502 3.5 13.5 0.5
C4C A:HEM502 3.5 13.3 0.5
CHC A:HEM501 3.5 15.8 0.5
CHB A:HEM501 3.5 15.9 0.5
CHC A:HEM502 3.7 13.9 0.5
CHD A:HEM502 3.8 13.1 0.5
CE2 A:TYR340 3.8 14.9 1.0
C2A A:HEM502 3.8 12.4 0.5
C3A A:HEM502 3.9 12.2 0.5
CE1 A:TYR340 4.0 14.9 1.0
C3D A:HEM501 4.2 14.2 0.5
C2D A:HEM501 4.2 14.1 0.5
C3C A:HEM501 4.2 15.7 0.5
C2C A:HEM501 4.2 15.8 0.5
C2B A:HEM502 4.2 14.0 0.5
C3D A:HEM502 4.2 12.8 0.5
NE2 A:HIS57 4.2 14.7 1.0
O A:HOH1008 4.3 22.2 1.0
C2A A:HEM501 4.3 15.5 0.5
C3A A:HEM501 4.3 15.7 0.5
C2B A:HEM501 4.3 15.8 0.5
C3B A:HEM502 4.3 14.8 0.5
NH2 A:ARG336 4.3 14.6 1.0
C3B A:HEM501 4.3 15.3 0.5
NE A:ARG336 4.4 14.8 1.0
CD2 A:HIS57 4.4 14.0 1.0
C2D A:HEM502 4.4 13.1 0.5
CG2 A:VAL56 4.4 15.8 1.0
CZ A:PHE143 4.6 16.4 1.0
C2C A:HEM502 4.6 13.2 0.5
C3C A:HEM502 4.7 12.8 0.5
CZ A:ARG336 4.8 14.7 1.0

Iron binding site 2 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 2 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe502

b:13.7
occ:0.50
 FE A:HEM502 0.0 13.7 0.5
FE A:HEM501 0.5 20.6 0.5
NB A:HEM501 1.7 16.4 0.5
OH A:TYR340 1.9 17.3 1.0
ND A:HEM502 2.0 13.3 0.5
NA A:HEM502 2.0 13.4 0.5
NC A:HEM502 2.1 13.6 0.5
NA A:HEM501 2.1 16.3 0.5
NB A:HEM502 2.1 13.8 0.5
NC A:HEM501 2.2 16.3 0.5
ND A:HEM501 2.3 16.0 0.5
C1B A:HEM501 2.7 16.3 0.5
C4B A:HEM501 2.7 16.2 0.5
CZ A:TYR340 2.9 16.4 1.0
C4A A:HEM501 3.0 16.4 0.5
C4D A:HEM502 3.0 13.0 0.5
C1C A:HEM501 3.0 16.0 0.5
C1A A:HEM502 3.0 12.9 0.5
C4B A:HEM502 3.0 14.4 0.5
C1D A:HEM502 3.0 13.3 0.5
C4C A:HEM502 3.0 13.3 0.5
C1B A:HEM502 3.0 13.7 0.5
C1C A:HEM502 3.1 13.5 0.5
C4A A:HEM502 3.1 13.2 0.5
C4C A:HEM501 3.2 15.7 0.5
CHB A:HEM501 3.2 15.9 0.5
C1A A:HEM501 3.2 15.7 0.5
CHC A:HEM501 3.2 15.8 0.5
C1D A:HEM501 3.3 14.9 0.5
C4D A:HEM501 3.3 15.1 0.5
CHA A:HEM502 3.4 12.7 0.5
CHD A:HEM502 3.4 13.1 0.5
CHC A:HEM502 3.4 13.9 0.5
CHB A:HEM502 3.5 13.4 0.5
CE1 A:TYR340 3.6 14.9 1.0
CE2 A:TYR340 3.7 14.9 1.0
CHD A:HEM501 3.7 15.3 0.5
CHA A:HEM501 3.7 15.1 0.5
C2B A:HEM501 3.9 15.8 0.5
C3B A:HEM501 3.9 15.3 0.5
NE A:ARG336 4.0 14.8 1.0
NH2 A:ARG336 4.2 14.6 1.0
C2C A:HEM501 4.2 15.8 0.5
C2C A:HEM502 4.2 13.2 0.5
C3A A:HEM501 4.2 15.7 0.5
C3C A:HEM502 4.2 12.8 0.5
C2A A:HEM502 4.2 12.4 0.5
C3B A:HEM502 4.2 14.8 0.5
C3C A:HEM501 4.2 15.7 0.5
C2B A:HEM502 4.3 14.0 0.5
C3D A:HEM502 4.3 12.8 0.5
C3A A:HEM502 4.3 12.2 0.5
C2D A:HEM502 4.3 13.1 0.5
C2A A:HEM501 4.3 15.5 0.5
CZ A:ARG336 4.5 14.7 1.0
CZ A:PHE143 4.5 16.4 1.0
C2D A:HEM501 4.6 14.1 0.5
C3D A:HEM501 4.6 14.2 0.5
O A:HOH1008 4.6 22.2 1.0
CG2 A:VAL56 4.7 15.8 1.0
NE2 A:HIS57 4.8 14.7 1.0
CD2 A:HIS57 4.9 14.0 1.0
CD1 A:TYR340 4.9 14.5 1.0
CD2 A:TYR340 4.9 15.2 1.0
CD A:ARG336 4.9 15.6 1.0
CE2 A:PHE143 5.0 15.9 1.0

Iron binding site 3 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 3 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:23.5
occ:0.50
 FE B:HEM501 0.0 23.5 0.5
FE B:HEM502 0.3 11.5 0.5
ND B:HEM501 1.9 15.9 0.5
ND B:HEM502 2.0 10.1 0.5
NA B:HEM501 2.0 16.2 0.5
NC B:HEM502 2.1 10.2 0.5
NA B:HEM502 2.1 10.3 0.5
NC B:HEM501 2.1 16.4 0.5
NB B:HEM501 2.1 16.7 0.5
NB B:HEM502 2.1 10.3 0.5
OH B:TYR340 2.2 14.2 1.0
O B:HOH976 2.4 37.6 1.0
C1D B:HEM501 2.9 15.1 0.5
C4D B:HEM501 2.9 15.6 0.5
C1D B:HEM502 3.0 10.2 0.5
C4B B:HEM502 3.0 10.5 0.5
C1A B:HEM501 3.0 15.4 0.5
C4D B:HEM502 3.0 9.8 0.5
C4B B:HEM501 3.0 16.6 0.5
C4C B:HEM501 3.0 16.0 0.5
C1C B:HEM502 3.0 10.3 0.5
C4C B:HEM502 3.1 10.2 0.5
C1B B:HEM502 3.1 10.5 0.5
C1A B:HEM502 3.1 10.1 0.5
C1C B:HEM501 3.1 16.5 0.5
C1B B:HEM501 3.1 16.2 0.5
C4A B:HEM501 3.1 15.7 0.5
C4A B:HEM502 3.1 9.9 0.5
CZ B:TYR340 3.2 13.4 1.0
CHC B:HEM502 3.4 10.5 0.5
CHD B:HEM501 3.4 15.2 0.5
CHA B:HEM501 3.4 14.9 0.5
CHD B:HEM502 3.4 9.6 0.5
CHC B:HEM501 3.5 16.6 0.5
CHA B:HEM502 3.5 9.9 0.5
CHB B:HEM502 3.5 10.0 0.5
CHB B:HEM501 3.5 15.1 0.5
CE2 B:TYR340 3.9 13.1 1.0
CE1 B:TYR340 4.0 14.6 1.0
C2D B:HEM501 4.2 14.4 0.5
C3D B:HEM501 4.2 14.9 0.5
C2A B:HEM501 4.2 14.6 0.5
C3C B:HEM501 4.2 16.1 0.5
C2D B:HEM502 4.2 9.7 0.5
C2C B:HEM501 4.2 16.7 0.5
C3B B:HEM502 4.3 10.8 0.5
C2C B:HEM502 4.3 10.3 0.5
C3D B:HEM502 4.3 9.6 0.5
C3A B:HEM501 4.3 15.1 0.5
C3C B:HEM502 4.3 10.4 0.5
C2B B:HEM502 4.3 10.7 0.5
NE B:ARG336 4.3 13.2 1.0
C3B B:HEM501 4.3 16.3 0.5
C3A B:HEM502 4.3 9.7 0.5
C2B B:HEM501 4.3 15.9 0.5
C2A B:HEM502 4.3 9.9 0.5
CZ B:PHE143 4.3 17.1 1.0
O B:HOH977 4.4 20.1 1.0
CG2 B:VAL56 4.4 12.2 1.0
NH2 B:ARG336 4.4 13.1 1.0
NE2 B:HIS57 4.5 13.8 1.0
CD2 B:HIS57 4.5 13.6 1.0
CZ B:ARG336 4.8 14.1 1.0
CE2 B:PHE143 4.9 16.6 1.0
CE1 B:PHE143 4.9 17.9 1.0

Iron binding site 4 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 4 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe502

b:11.5
occ:0.50
 FE B:HEM502 0.0 11.5 0.5
FE B:HEM501 0.3 23.5 0.5
ND B:HEM501 1.9 15.9 0.5
OH B:TYR340 1.9 14.2 1.0
ND B:HEM502 1.9 10.1 0.5
NA B:HEM502 2.0 10.3 0.5
NA B:HEM501 2.0 16.2 0.5
NB B:HEM502 2.1 10.3 0.5
NC B:HEM502 2.1 10.2 0.5
NC B:HEM501 2.1 16.4 0.5
NB B:HEM501 2.2 16.7 0.5
O B:HOH976 2.7 37.6 1.0
C1D B:HEM501 2.9 15.1 0.5
C4D B:HEM501 2.9 15.6 0.5
CZ B:TYR340 2.9 13.4 1.0
C1D B:HEM502 3.0 10.2 0.5
C4D B:HEM502 3.0 9.8 0.5
C1A B:HEM501 3.0 15.4 0.5
C1A B:HEM502 3.0 10.1 0.5
C4C B:HEM501 3.0 16.0 0.5
C4B B:HEM502 3.0 10.5 0.5
C4A B:HEM502 3.0 9.9 0.5
C1B B:HEM502 3.1 10.5 0.5
C4C B:HEM502 3.1 10.2 0.5
C4A B:HEM501 3.1 15.7 0.5
C4B B:HEM501 3.1 16.6 0.5
C1C B:HEM502 3.1 10.3 0.5
C1B B:HEM501 3.1 16.2 0.5
C1C B:HEM501 3.1 16.5 0.5
CHD B:HEM501 3.4 15.2 0.5
CHA B:HEM501 3.4 14.9 0.5
CHD B:HEM502 3.4 9.6 0.5
CHA B:HEM502 3.4 9.9 0.5
CHB B:HEM502 3.4 10.0 0.5
CHC B:HEM502 3.5 10.5 0.5
CHB B:HEM501 3.5 15.1 0.5
CHC B:HEM501 3.5 16.6 0.5
CE2 B:TYR340 3.6 13.1 1.0
CE1 B:TYR340 3.7 14.6 1.0
NE B:ARG336 4.1 13.2 1.0
C2D B:HEM501 4.1 14.4 0.5
C3D B:HEM501 4.2 14.9 0.5
C2A B:HEM501 4.2 14.6 0.5
C3C B:HEM501 4.2 16.1 0.5
NH2 B:ARG336 4.2 13.1 1.0
C2D B:HEM502 4.2 9.7 0.5
C3A B:HEM502 4.2 9.7 0.5
C3D B:HEM502 4.2 9.6 0.5
C2A B:HEM502 4.2 9.9 0.5
C2C B:HEM501 4.3 16.7 0.5
C3A B:HEM501 4.3 15.1 0.5
C2B B:HEM502 4.3 10.7 0.5
C3B B:HEM502 4.3 10.8 0.5
C3C B:HEM502 4.3 10.4 0.5
C2C B:HEM502 4.3 10.3 0.5
C2B B:HEM501 4.4 15.9 0.5
C3B B:HEM501 4.4 16.3 0.5
CZ B:PHE143 4.6 17.1 1.0
CZ B:ARG336 4.6 14.1 1.0
O B:HOH977 4.6 20.1 1.0
CG2 B:VAL56 4.6 12.2 1.0
NE2 B:HIS57 4.7 13.8 1.0
CD2 B:HIS57 4.7 13.6 1.0
CD2 B:TYR340 4.9 12.8 1.0
CD1 B:TYR340 5.0 12.5 1.0

Iron binding site 5 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 5 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe501

b:19.8
occ:0.50
 FE C:HEM501 0.0 19.8 0.5
FE C:HEM502 0.4 12.4 0.5
ND C:HEM502 1.9 11.6 0.5
ND C:HEM501 1.9 13.8 0.5
NA C:HEM502 2.0 12.3 0.5
NA C:HEM501 2.0 13.8 0.5
NB C:HEM501 2.1 14.7 0.5
NC C:HEM501 2.1 13.8 0.5
NB C:HEM502 2.2 12.6 0.5
OH C:TYR340 2.2 12.2 1.0
NC C:HEM502 2.2 12.2 0.5
O C:HOH992 2.8 42.6 1.0
C4D C:HEM502 2.9 11.3 0.5
C1A C:HEM502 2.9 11.7 0.5
C1D C:HEM501 3.0 12.8 0.5
C1D C:HEM502 3.0 10.9 0.5
C4D C:HEM501 3.0 13.0 0.5
C4B C:HEM501 3.0 15.1 0.5
C4C C:HEM501 3.0 14.2 0.5
C4A C:HEM502 3.0 11.6 0.5
C1B C:HEM501 3.1 14.3 0.5
C1A C:HEM501 3.1 13.5 0.5
C4A C:HEM501 3.1 13.2 0.5
C1C C:HEM501 3.1 14.7 0.5
C1B C:HEM502 3.1 12.6 0.5
C4B C:HEM502 3.2 13.2 0.5
CZ C:TYR340 3.2 12.6 1.0
C4C C:HEM502 3.2 11.5 0.5
C1C C:HEM502 3.2 12.4 0.5
CHA C:HEM502 3.3 11.3 0.5
CHD C:HEM501 3.4 13.0 0.5
CHA C:HEM501 3.4 13.2 0.5
CHB C:HEM501 3.4 13.8 0.5
CHB C:HEM502 3.5 12.1 0.5
CHC C:HEM501 3.5 14.4 0.5
CHD C:HEM502 3.5 11.3 0.5
CHC C:HEM502 3.6 12.9 0.5
CE2 C:TYR340 3.8 13.1 1.0
CE1 C:TYR340 4.0 13.2 1.0
C2A C:HEM502 4.2 11.7 0.5
C3C C:HEM501 4.2 14.4 0.5
C3A C:HEM502 4.2 11.6 0.5
C2D C:HEM502 4.2 10.8 0.5
C3D C:HEM502 4.2 11.1 0.5
C2D C:HEM501 4.2 12.8 0.5
C3B C:HEM501 4.2 14.8 0.5
C2C C:HEM501 4.2 14.9 0.5
C3D C:HEM501 4.2 12.6 0.5
C2B C:HEM501 4.2 14.1 0.5
C3A C:HEM501 4.3 12.7 0.5
C2A C:HEM501 4.3 13.0 0.5
NE C:ARG336 4.3 13.8 1.0
C2B C:HEM502 4.4 13.0 0.5
C2C C:HEM502 4.4 12.1 0.5
CG2 C:VAL56 4.4 13.8 1.0
C3C C:HEM502 4.4 11.7 0.5
NH2 C:ARG336 4.4 12.9 1.0
C3B C:HEM502 4.4 13.2 0.5
NE2 C:HIS57 4.4 14.5 1.0
O C:HOH990 4.4 20.0 1.0
CZ C:PHE143 4.4 15.3 1.0
CD2 C:HIS57 4.5 14.4 1.0
CZ C:ARG336 4.8 13.8 1.0
CE2 C:PHE143 4.9 14.2 1.0

Iron binding site 6 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 6 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe502

b:12.4
occ:0.50
 FE C:HEM502 0.0 12.4 0.5
FE C:HEM501 0.4 19.8 0.5
OH C:TYR340 1.9 12.2 1.0
ND C:HEM502 2.0 11.6 0.5
NB C:HEM501 2.0 14.7 0.5
NC C:HEM501 2.0 13.8 0.5
NA C:HEM502 2.0 12.3 0.5
NB C:HEM502 2.1 12.6 0.5
NC C:HEM502 2.1 12.2 0.5
ND C:HEM501 2.1 13.8 0.5
NA C:HEM501 2.1 13.8 0.5
CZ C:TYR340 2.9 12.6 1.0
C4B C:HEM501 2.9 15.1 0.5
C1B C:HEM501 3.0 14.3 0.5
C4C C:HEM501 3.0 14.2 0.5
C1D C:HEM502 3.0 10.9 0.5
C4D C:HEM502 3.0 11.3 0.5
C1C C:HEM501 3.0 14.7 0.5
C4B C:HEM502 3.0 13.2 0.5
C1D C:HEM501 3.0 12.8 0.5
C1B C:HEM502 3.1 12.6 0.5
C1C C:HEM502 3.1 12.4 0.5
C1A C:HEM502 3.1 11.7 0.5
C4C C:HEM502 3.1 11.5 0.5
C4A C:HEM501 3.1 13.2 0.5
C4A C:HEM502 3.1 11.6 0.5
O C:HOH992 3.1 42.6 1.0
C4D C:HEM501 3.1 13.0 0.5
C1A C:HEM501 3.2 13.5 0.5
CHC C:HEM501 3.4 14.4 0.5
CHB C:HEM501 3.4 13.8 0.5
CHD C:HEM501 3.4 13.0 0.5
CHA C:HEM502 3.4 11.3 0.5
CHC C:HEM502 3.4 12.9 0.5
CHD C:HEM502 3.5 11.3 0.5
CHB C:HEM502 3.5 12.1 0.5
CHA C:HEM501 3.6 13.2 0.5
CE2 C:TYR340 3.7 13.1 1.0
CE1 C:TYR340 3.7 13.2 1.0
NE C:ARG336 4.0 13.8 1.0
C3C C:HEM501 4.1 14.4 0.5
C3B C:HEM501 4.1 14.8 0.5
NH2 C:ARG336 4.1 12.9 1.0
C2B C:HEM501 4.1 14.1 0.5
C2C C:HEM501 4.1 14.9 0.5
C2C C:HEM502 4.2 12.1 0.5
C3C C:HEM502 4.2 11.7 0.5
C2D C:HEM502 4.3 10.8 0.5
C2B C:HEM502 4.3 13.0 0.5
C3A C:HEM502 4.3 11.6 0.5
C2A C:HEM502 4.3 11.7 0.5
C3B C:HEM502 4.3 13.2 0.5
C3D C:HEM502 4.3 11.1 0.5
C2D C:HEM501 4.3 12.8 0.5
C3A C:HEM501 4.3 12.7 0.5
C2A C:HEM501 4.4 13.0 0.5
C3D C:HEM501 4.4 12.6 0.5
CZ C:ARG336 4.5 13.8 1.0
CZ C:PHE143 4.6 15.3 1.0
O C:HOH990 4.6 20.0 1.0
CG2 C:VAL56 4.7 13.8 1.0
NE2 C:HIS57 4.7 14.5 1.0
CD2 C:HIS57 4.9 14.4 1.0
CD2 C:TYR340 4.9 12.1 1.0
CD1 C:TYR340 4.9 13.8 1.0
CD C:ARG336 4.9 13.1 1.0

Iron binding site 7 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 7 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe501

b:24.0
occ:0.50
 FE D:HEM501 0.0 24.0 0.5
FE D:HEM502 0.3 13.7 0.5
ND D:HEM502 1.9 13.2 0.5
ND D:HEM501 1.9 16.8 0.5
NA D:HEM501 2.0 17.4 0.5
NC D:HEM501 2.1 17.6 0.5
NC D:HEM502 2.1 13.0 0.5
NB D:HEM501 2.1 17.2 0.5
NA D:HEM502 2.1 12.4 0.5
OH D:TYR340 2.2 16.2 1.0
NB D:HEM502 2.2 13.5 0.5
O D:HOH978 2.9 37.5 1.0
C1D D:HEM502 2.9 12.0 0.5
C4D D:HEM502 2.9 12.2 0.5
C1D D:HEM501 2.9 15.6 0.5
C4D D:HEM501 3.0 16.7 0.5
C4B D:HEM501 3.0 17.1 0.5
C1B D:HEM501 3.0 16.6 0.5
C4A D:HEM501 3.0 16.5 0.5
C4C D:HEM502 3.0 12.3 0.5
C1A D:HEM502 3.0 12.1 0.5
C4C D:HEM501 3.0 17.7 0.5
C1A D:HEM501 3.1 16.8 0.5
C1C D:HEM501 3.1 17.6 0.5
C1C D:HEM502 3.1 12.7 0.5
C4B D:HEM502 3.1 13.1 0.5
CZ D:TYR340 3.2 15.7 1.0
C1B D:HEM502 3.2 13.1 0.5
C4A D:HEM502 3.2 11.8 0.5
CHD D:HEM502 3.4 11.7 0.5
CHA D:HEM502 3.4 12.5 0.5
CHB D:HEM501 3.4 15.6 0.5
CHD D:HEM501 3.4 16.5 0.5
CHC D:HEM501 3.5 17.0 0.5
CHA D:HEM501 3.5 17.5 0.5
CHC D:HEM502 3.5 13.0 0.5
CHB D:HEM502 3.6 12.2 0.5
CE2 D:TYR340 3.8 13.8 1.0
CE1 D:TYR340 3.9 15.9 1.0
C2D D:HEM502 4.2 12.2 0.5
C2D D:HEM501 4.2 15.3 0.5
C3D D:HEM502 4.2 11.9 0.5
C2B D:HEM501 4.2 15.7 0.5
NE D:ARG336 4.2 15.7 1.0
C3A D:HEM501 4.2 16.5 0.5
C3C D:HEM502 4.3 12.0 0.5
C3C D:HEM501 4.3 17.9 0.5
C2C D:HEM501 4.3 18.3 0.5
C3D D:HEM501 4.3 16.0 0.5
C3B D:HEM501 4.3 16.4 0.5
C2A D:HEM502 4.3 11.9 0.5
C2C D:HEM502 4.3 12.2 0.5
C2A D:HEM501 4.3 16.0 0.5
C3A D:HEM502 4.3 11.2 0.5
C2B D:HEM502 4.4 13.5 0.5
C3B D:HEM502 4.4 13.8 0.5
O D:HOH976 4.4 21.8 1.0
CG2 D:VAL56 4.4 14.0 1.0
CZ D:PHE143 4.4 16.8 1.0
NH2 D:ARG336 4.4 16.6 1.0
NE2 D:HIS57 4.5 15.7 1.0
CD2 D:HIS57 4.5 13.9 1.0
CZ D:ARG336 4.7 16.8 1.0
CE2 D:PHE143 4.9 16.8 1.0

Iron binding site 8 out of 8 in 4qoq

Go back to Iron Binding Sites List in 4qoq
Iron binding site 8 out of 8 in the Structure of Bacillus Pumilus Catalase with Guaiacol Bound


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of Bacillus Pumilus Catalase with Guaiacol Bound within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe502

b:13.7
occ:0.50
 FE D:HEM502 0.0 13.7 0.5
FE D:HEM501 0.3 24.0 0.5
OH D:TYR340 1.8 16.2 1.0
ND D:HEM501 1.9 16.8 0.5
ND D:HEM502 2.0 13.2 0.5
NC D:HEM501 2.0 17.6 0.5
NA D:HEM502 2.0 12.4 0.5
NB D:HEM502 2.1 13.5 0.5
NC D:HEM502 2.1 13.0 0.5
NB D:HEM501 2.1 17.2 0.5
NA D:HEM501 2.2 17.4 0.5
C1D D:HEM501 2.9 15.6 0.5
CZ D:TYR340 2.9 15.7 1.0
C4C D:HEM501 2.9 17.7 0.5
C1D D:HEM502 3.0 12.0 0.5
C4D D:HEM502 3.0 12.2 0.5
C4D D:HEM501 3.0 16.7 0.5
C1B D:HEM502 3.0 13.1 0.5
C1C D:HEM501 3.0 17.6 0.5
C4B D:HEM501 3.0 17.1 0.5
C4B D:HEM502 3.0 13.1 0.5
C1A D:HEM502 3.0 12.1 0.5
C4A D:HEM502 3.1 11.8 0.5
C4C D:HEM502 3.1 12.3 0.5
C1B D:HEM501 3.1 16.6 0.5
O D:HOH978 3.1 37.5 1.0
C1C D:HEM502 3.1 12.7 0.5
C4A D:HEM501 3.1 16.5 0.5
C1A D:HEM501 3.2 16.8 0.5
CHD D:HEM501 3.3 16.5 0.5
CHD D:HEM502 3.4 11.7 0.5
CHC D:HEM501 3.4 17.0 0.5
CHC D:HEM502 3.4 13.0 0.5
CHA D:HEM502 3.5 12.5 0.5
CHB D:HEM502 3.5 12.2 0.5
CHB D:HEM501 3.5 15.6 0.5
CHA D:HEM501 3.6 17.5 0.5
CE2 D:TYR340 3.6 13.8 1.0
CE1 D:TYR340 3.7 15.9 1.0
NE D:ARG336 4.0 15.7 1.0
C3C D:HEM501 4.1 17.9 0.5
NH2 D:ARG336 4.1 16.6 1.0
C2C D:HEM501 4.1 18.3 0.5
C2D D:HEM501 4.2 15.3 0.5
C3A D:HEM502 4.2 11.2 0.5
C2A D:HEM502 4.2 11.9 0.5
C2D D:HEM502 4.3 12.2 0.5
C3D D:HEM501 4.3 16.0 0.5
C2B D:HEM502 4.3 13.5 0.5
C2B D:HEM501 4.3 15.7 0.5
C3C D:HEM502 4.3 12.0 0.5
C2C D:HEM502 4.3 12.2 0.5
C3B D:HEM501 4.3 16.4 0.5
C3B D:HEM502 4.3 13.8 0.5
C3D D:HEM502 4.3 11.9 0.5
C3A D:HEM501 4.3 16.5 0.5
C2A D:HEM501 4.4 16.0 0.5
CZ D:ARG336 4.5 16.8 1.0
O D:HOH976 4.6 21.8 1.0
CZ D:PHE143 4.7 16.8 1.0
CG2 D:VAL56 4.7 14.0 1.0
NE2 D:HIS57 4.7 15.7 1.0
CD2 D:HIS57 4.7 13.9 1.0
CD2 D:TYR340 4.9 13.4 1.0
CD1 D:TYR340 4.9 15.4 1.0
CD D:ARG336 4.9 16.4 1.0

Reference:

P.C.Loewen, J.Villanueva, J.Switala, L.J.Donald, A.Ivancich. Unprecedented Access of Phenolic Substrates to the Heme Active Site of A Catalase: Substrate Binding and Peroxidase-Like Reactivity of Bacillus Pumilus Catalase Monitored By X-Ray Crystallography and Epr Spectroscopy. Proteins 2015.
ISSN: ESSN 1097-0134
PubMed: 25663126
DOI: 10.1002/PROT.24777
Page generated: Mon Aug 5 08:52:33 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy