Iron in PDB 4rkm: Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Protein crystallography data
The structure of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I, PDB code: 4rkm
was solved by
B.Hermann,
M.Kern,
L.La Pietra,
J.Simon,
O.Einsle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.37 /
2.20
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
211.121,
103.042,
233.070,
90.00,
98.46,
90.00
|
R / Rfree (%)
|
18.4 /
22
|
Other elements in 4rkm:
The structure of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
96;
Binding sites:
The binding sites of Iron atom in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
(pdb code 4rkm). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 96 binding sites of Iron where determined in the
Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I, PDB code: 4rkm:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 1 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe806
b:20.7
occ:1.00
|
FE
|
A:HEM806
|
0.0
|
20.7
|
1.0
|
ND
|
A:HEM806
|
1.9
|
21.5
|
1.0
|
NE2
|
A:HIS147
|
2.0
|
17.3
|
1.0
|
NE2
|
A:HIS348
|
2.0
|
20.5
|
1.0
|
NA
|
A:HEM806
|
2.0
|
20.3
|
1.0
|
NC
|
A:HEM806
|
2.1
|
21.2
|
1.0
|
NB
|
A:HEM806
|
2.3
|
20.5
|
1.0
|
C4D
|
A:HEM806
|
2.9
|
21.1
|
1.0
|
C1D
|
A:HEM806
|
2.9
|
21.5
|
1.0
|
CE1
|
A:HIS147
|
2.9
|
17.4
|
1.0
|
CE1
|
A:HIS348
|
2.9
|
20.9
|
1.0
|
C1A
|
A:HEM806
|
3.0
|
20.0
|
1.0
|
CD2
|
A:HIS147
|
3.0
|
17.4
|
1.0
|
C4A
|
A:HEM806
|
3.0
|
19.7
|
1.0
|
CD2
|
A:HIS348
|
3.0
|
20.8
|
1.0
|
C4C
|
A:HEM806
|
3.0
|
21.3
|
1.0
|
C1C
|
A:HEM806
|
3.1
|
21.1
|
1.0
|
C4B
|
A:HEM806
|
3.2
|
20.9
|
1.0
|
C1B
|
A:HEM806
|
3.2
|
20.9
|
1.0
|
CHA
|
A:HEM806
|
3.4
|
20.9
|
1.0
|
CHD
|
A:HEM806
|
3.4
|
21.4
|
1.0
|
CHC
|
A:HEM806
|
3.5
|
20.6
|
1.0
|
CHB
|
A:HEM806
|
3.5
|
20.2
|
1.0
|
ND1
|
A:HIS147
|
4.1
|
17.5
|
1.0
|
ND1
|
A:HIS348
|
4.1
|
21.1
|
1.0
|
CG
|
A:HIS147
|
4.1
|
17.6
|
1.0
|
CG
|
A:HIS348
|
4.1
|
20.4
|
1.0
|
C2D
|
A:HEM806
|
4.2
|
21.6
|
1.0
|
C3D
|
A:HEM806
|
4.2
|
21.0
|
1.0
|
C2A
|
A:HEM806
|
4.2
|
19.7
|
1.0
|
C3A
|
A:HEM806
|
4.2
|
19.6
|
1.0
|
C3C
|
A:HEM806
|
4.3
|
21.7
|
1.0
|
C2C
|
A:HEM806
|
4.3
|
21.2
|
1.0
|
C3B
|
A:HEM806
|
4.4
|
20.8
|
1.0
|
C2B
|
A:HEM806
|
4.4
|
20.4
|
1.0
|
|
Iron binding site 2 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 2 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe807
b:17.2
occ:1.00
|
FE
|
A:HEM807
|
0.0
|
17.2
|
1.0
|
ND
|
A:HEM807
|
1.9
|
17.0
|
1.0
|
NA
|
A:HEM807
|
2.0
|
17.0
|
1.0
|
NE2
|
A:HIS306
|
2.0
|
17.2
|
1.0
|
NC
|
A:HEM807
|
2.1
|
17.1
|
1.0
|
NB
|
A:HEM807
|
2.3
|
17.1
|
1.0
|
S
|
A:SO2814
|
2.4
|
16.2
|
0.3
|
S
|
A:SX802
|
2.4
|
50.5
|
0.7
|
C1D
|
A:HEM807
|
2.9
|
16.8
|
1.0
|
C4D
|
A:HEM807
|
2.9
|
17.0
|
1.0
|
CE1
|
A:HIS306
|
3.0
|
17.2
|
1.0
|
C4A
|
A:HEM807
|
3.0
|
16.8
|
1.0
|
C1A
|
A:HEM807
|
3.0
|
16.8
|
1.0
|
O2
|
A:SO2814
|
3.0
|
16.4
|
0.3
|
C4C
|
A:HEM807
|
3.0
|
16.6
|
1.0
|
CD2
|
A:HIS306
|
3.1
|
17.2
|
1.0
|
C1C
|
A:HEM807
|
3.1
|
17.1
|
1.0
|
C1B
|
A:HEM807
|
3.2
|
17.0
|
1.0
|
C4B
|
A:HEM807
|
3.2
|
17.2
|
1.0
|
CHD
|
A:HEM807
|
3.4
|
16.4
|
1.0
|
CHA
|
A:HEM807
|
3.4
|
16.8
|
1.0
|
CHB
|
A:HEM807
|
3.4
|
16.9
|
1.0
|
CHC
|
A:HEM807
|
3.5
|
17.1
|
1.0
|
O1
|
A:SO2814
|
3.7
|
16.1
|
0.3
|
O
|
A:SX802
|
3.7
|
45.5
|
0.7
|
ND1
|
A:HIS306
|
4.1
|
17.3
|
1.0
|
C2D
|
A:HEM807
|
4.2
|
16.6
|
1.0
|
CG
|
A:HIS306
|
4.2
|
17.6
|
1.0
|
C3D
|
A:HEM807
|
4.2
|
16.7
|
1.0
|
C3A
|
A:HEM807
|
4.2
|
16.6
|
1.0
|
C2A
|
A:HEM807
|
4.2
|
16.6
|
1.0
|
C3C
|
A:HEM807
|
4.2
|
16.6
|
1.0
|
C2C
|
A:HEM807
|
4.3
|
16.6
|
1.0
|
O
|
A:HOH1232
|
4.3
|
19.4
|
0.5
|
CU
|
A:CU1801
|
4.4
|
26.7
|
1.0
|
C2B
|
A:HEM807
|
4.4
|
17.0
|
1.0
|
C3B
|
A:HEM807
|
4.5
|
17.2
|
1.0
|
SG
|
A:CYS399
|
4.9
|
19.8
|
1.0
|
CMD
|
A:HEM809
|
5.0
|
15.2
|
1.0
|
O
|
A:HOH1233
|
5.0
|
44.0
|
1.0
|
|
Iron binding site 3 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 3 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe808
b:18.4
occ:1.00
|
FE
|
A:HEM808
|
0.0
|
18.4
|
1.0
|
ND
|
A:HEM808
|
1.9
|
18.5
|
1.0
|
NA
|
A:HEM808
|
2.0
|
18.8
|
1.0
|
NE2
|
A:HIS343
|
2.0
|
17.7
|
1.0
|
NE2
|
A:HIS425
|
2.1
|
17.3
|
1.0
|
NC
|
A:HEM808
|
2.1
|
17.7
|
1.0
|
NB
|
A:HEM808
|
2.3
|
17.9
|
1.0
|
C1D
|
A:HEM808
|
2.9
|
17.9
|
1.0
|
CE1
|
A:HIS343
|
2.9
|
18.1
|
1.0
|
C4D
|
A:HEM808
|
2.9
|
18.2
|
1.0
|
C1A
|
A:HEM808
|
3.0
|
19.4
|
1.0
|
C4A
|
A:HEM808
|
3.0
|
18.9
|
1.0
|
CD2
|
A:HIS425
|
3.0
|
17.3
|
1.0
|
C4C
|
A:HEM808
|
3.0
|
17.4
|
1.0
|
CE1
|
A:HIS425
|
3.1
|
17.4
|
1.0
|
C1C
|
A:HEM808
|
3.1
|
17.6
|
1.0
|
CD2
|
A:HIS343
|
3.1
|
17.7
|
1.0
|
C4B
|
A:HEM808
|
3.2
|
17.9
|
1.0
|
C1B
|
A:HEM808
|
3.2
|
18.1
|
1.0
|
CHD
|
A:HEM808
|
3.4
|
17.3
|
1.0
|
CHA
|
A:HEM808
|
3.4
|
18.8
|
1.0
|
CHB
|
A:HEM808
|
3.5
|
18.2
|
1.0
|
CHC
|
A:HEM808
|
3.5
|
17.5
|
1.0
|
ND1
|
A:HIS343
|
4.1
|
17.6
|
1.0
|
ND1
|
A:HIS425
|
4.2
|
17.4
|
1.0
|
CG
|
A:HIS343
|
4.2
|
17.5
|
1.0
|
C2D
|
A:HEM808
|
4.2
|
17.8
|
1.0
|
CG
|
A:HIS425
|
4.2
|
17.5
|
1.0
|
C3D
|
A:HEM808
|
4.2
|
17.7
|
1.0
|
C2A
|
A:HEM808
|
4.2
|
19.7
|
1.0
|
C3A
|
A:HEM808
|
4.2
|
19.4
|
1.0
|
C3C
|
A:HEM808
|
4.2
|
17.4
|
1.0
|
C2C
|
A:HEM808
|
4.2
|
17.5
|
1.0
|
C2B
|
A:HEM808
|
4.4
|
18.0
|
1.0
|
C3B
|
A:HEM808
|
4.4
|
18.0
|
1.0
|
O
|
A:HOH1234
|
4.7
|
29.7
|
1.0
|
|
Iron binding site 4 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 4 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe809
b:16.3
occ:1.00
|
FE
|
A:HEM809
|
0.0
|
16.3
|
1.0
|
ND
|
A:HEM809
|
1.9
|
15.6
|
1.0
|
NA
|
A:HEM809
|
2.0
|
15.6
|
1.0
|
NE2
|
A:HIS364
|
2.0
|
16.0
|
1.0
|
NC
|
A:HEM809
|
2.1
|
15.1
|
1.0
|
NE2
|
A:HIS159
|
2.1
|
17.6
|
1.0
|
NB
|
A:HEM809
|
2.3
|
15.4
|
1.0
|
C1D
|
A:HEM809
|
2.9
|
15.4
|
1.0
|
C4D
|
A:HEM809
|
2.9
|
15.5
|
1.0
|
CE1
|
A:HIS364
|
2.9
|
15.7
|
1.0
|
C1A
|
A:HEM809
|
3.0
|
15.9
|
1.0
|
CE1
|
A:HIS159
|
3.0
|
17.4
|
1.0
|
C4A
|
A:HEM809
|
3.0
|
15.6
|
1.0
|
CD2
|
A:HIS364
|
3.0
|
15.5
|
1.0
|
C4C
|
A:HEM809
|
3.0
|
15.2
|
1.0
|
C1C
|
A:HEM809
|
3.1
|
15.0
|
1.0
|
CD2
|
A:HIS159
|
3.2
|
17.4
|
1.0
|
C4B
|
A:HEM809
|
3.2
|
15.4
|
1.0
|
C1B
|
A:HEM809
|
3.2
|
15.6
|
1.0
|
CHA
|
A:HEM809
|
3.4
|
16.0
|
1.0
|
CHD
|
A:HEM809
|
3.4
|
15.2
|
1.0
|
CHB
|
A:HEM809
|
3.5
|
15.4
|
1.0
|
CHC
|
A:HEM809
|
3.5
|
15.3
|
1.0
|
ND1
|
A:HIS364
|
4.1
|
15.5
|
1.0
|
CG
|
A:HIS364
|
4.1
|
15.5
|
1.0
|
ND1
|
A:HIS159
|
4.2
|
17.3
|
1.0
|
C2D
|
A:HEM809
|
4.2
|
15.2
|
1.0
|
C3D
|
A:HEM809
|
4.2
|
15.1
|
1.0
|
C3A
|
A:HEM809
|
4.2
|
15.8
|
1.0
|
C2A
|
A:HEM809
|
4.2
|
16.4
|
1.0
|
C3C
|
A:HEM809
|
4.2
|
14.8
|
1.0
|
C2C
|
A:HEM809
|
4.3
|
14.7
|
1.0
|
CG
|
A:HIS159
|
4.3
|
17.4
|
1.0
|
C2B
|
A:HEM809
|
4.4
|
15.3
|
1.0
|
C3B
|
A:HEM809
|
4.5
|
15.2
|
1.0
|
|
Iron binding site 5 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 5 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe810
b:17.7
occ:1.00
|
FE
|
A:HEM810
|
0.0
|
17.7
|
1.0
|
ND
|
A:HEM810
|
1.9
|
17.4
|
1.0
|
NA
|
A:HEM810
|
2.0
|
17.6
|
1.0
|
NE2
|
A:HIS422
|
2.0
|
17.4
|
1.0
|
NE2
|
A:HIS516
|
2.1
|
16.0
|
1.0
|
NC
|
A:HEM810
|
2.1
|
17.2
|
1.0
|
NB
|
A:HEM810
|
2.3
|
17.4
|
1.0
|
C1D
|
A:HEM810
|
2.9
|
17.6
|
1.0
|
C4D
|
A:HEM810
|
2.9
|
18.4
|
1.0
|
CE1
|
A:HIS422
|
2.9
|
17.3
|
1.0
|
CD2
|
A:HIS516
|
3.0
|
15.7
|
1.0
|
C4A
|
A:HEM810
|
3.0
|
17.7
|
1.0
|
C1A
|
A:HEM810
|
3.0
|
17.9
|
1.0
|
CD2
|
A:HIS422
|
3.0
|
17.3
|
1.0
|
C4C
|
A:HEM810
|
3.1
|
17.0
|
1.0
|
CE1
|
A:HIS516
|
3.1
|
15.8
|
1.0
|
C1C
|
A:HEM810
|
3.1
|
17.0
|
1.0
|
C4B
|
A:HEM810
|
3.2
|
17.6
|
1.0
|
C1B
|
A:HEM810
|
3.2
|
17.6
|
1.0
|
CHA
|
A:HEM810
|
3.4
|
18.1
|
1.0
|
CHD
|
A:HEM810
|
3.4
|
17.6
|
1.0
|
CHB
|
A:HEM810
|
3.5
|
17.4
|
1.0
|
CHC
|
A:HEM810
|
3.5
|
17.3
|
1.0
|
ND1
|
A:HIS422
|
4.0
|
17.4
|
1.0
|
CG
|
A:HIS422
|
4.1
|
17.6
|
1.0
|
CG
|
A:HIS516
|
4.1
|
15.9
|
1.0
|
ND1
|
A:HIS516
|
4.2
|
15.9
|
1.0
|
C2D
|
A:HEM810
|
4.2
|
17.9
|
1.0
|
C3A
|
A:HEM810
|
4.2
|
17.5
|
1.0
|
C3D
|
A:HEM810
|
4.2
|
18.8
|
1.0
|
C2A
|
A:HEM810
|
4.2
|
17.6
|
1.0
|
C3C
|
A:HEM810
|
4.3
|
16.9
|
1.0
|
C2C
|
A:HEM810
|
4.3
|
16.8
|
1.0
|
C3B
|
A:HEM810
|
4.4
|
18.1
|
1.0
|
C2B
|
A:HEM810
|
4.4
|
17.6
|
1.0
|
CE
|
A:MET489
|
4.6
|
18.1
|
1.0
|
|
Iron binding site 6 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 6 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe811
b:19.3
occ:1.00
|
FE
|
A:HEM811
|
0.0
|
19.3
|
1.0
|
ND
|
A:HEM811
|
1.9
|
20.4
|
1.0
|
NA
|
A:HEM811
|
2.0
|
19.6
|
1.0
|
NE2
|
A:HIS466
|
2.0
|
20.7
|
1.0
|
NE2
|
A:HIS411
|
2.1
|
19.2
|
1.0
|
NC
|
A:HEM811
|
2.1
|
19.5
|
1.0
|
NB
|
A:HEM811
|
2.3
|
19.8
|
1.0
|
C1D
|
A:HEM811
|
2.9
|
20.7
|
1.0
|
C4D
|
A:HEM811
|
2.9
|
21.0
|
1.0
|
CE1
|
A:HIS466
|
2.9
|
20.5
|
1.0
|
C1A
|
A:HEM811
|
3.0
|
20.0
|
1.0
|
C4A
|
A:HEM811
|
3.0
|
19.4
|
1.0
|
C4C
|
A:HEM811
|
3.0
|
19.8
|
1.0
|
CD2
|
A:HIS411
|
3.0
|
18.7
|
1.0
|
CE1
|
A:HIS411
|
3.0
|
19.2
|
1.0
|
C1C
|
A:HEM811
|
3.1
|
19.3
|
1.0
|
CD2
|
A:HIS466
|
3.1
|
20.7
|
1.0
|
C1B
|
A:HEM811
|
3.2
|
20.2
|
1.0
|
C4B
|
A:HEM811
|
3.2
|
20.3
|
1.0
|
CHD
|
A:HEM811
|
3.4
|
20.2
|
1.0
|
CHA
|
A:HEM811
|
3.4
|
20.3
|
1.0
|
CHB
|
A:HEM811
|
3.4
|
19.8
|
1.0
|
CHC
|
A:HEM811
|
3.5
|
19.8
|
1.0
|
ND1
|
A:HIS466
|
4.1
|
21.2
|
1.0
|
C2D
|
A:HEM811
|
4.1
|
21.6
|
1.0
|
C3D
|
A:HEM811
|
4.2
|
22.5
|
1.0
|
ND1
|
A:HIS411
|
4.2
|
19.1
|
1.0
|
CG
|
A:HIS466
|
4.2
|
21.2
|
1.0
|
C3A
|
A:HEM811
|
4.2
|
19.3
|
1.0
|
C2A
|
A:HEM811
|
4.2
|
19.7
|
1.0
|
CG
|
A:HIS411
|
4.2
|
18.6
|
1.0
|
C3C
|
A:HEM811
|
4.2
|
19.9
|
1.0
|
C2C
|
A:HEM811
|
4.3
|
19.6
|
1.0
|
C2B
|
A:HEM811
|
4.4
|
20.6
|
1.0
|
C3B
|
A:HEM811
|
4.4
|
21.4
|
1.0
|
|
Iron binding site 7 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 7 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe812
b:20.0
occ:1.00
|
FE
|
A:HEM812
|
0.0
|
20.0
|
1.0
|
ND
|
A:HEM812
|
1.9
|
19.7
|
1.0
|
NA
|
A:HEM812
|
2.0
|
19.9
|
1.0
|
NE2
|
A:HIS663
|
2.0
|
22.5
|
1.0
|
NE2
|
A:HIS488
|
2.0
|
18.8
|
1.0
|
NC
|
A:HEM812
|
2.1
|
19.2
|
1.0
|
NB
|
A:HEM812
|
2.3
|
19.8
|
1.0
|
C4D
|
A:HEM812
|
2.9
|
19.9
|
1.0
|
C1D
|
A:HEM812
|
2.9
|
19.8
|
1.0
|
CE1
|
A:HIS488
|
2.9
|
18.5
|
1.0
|
CE1
|
A:HIS663
|
3.0
|
22.2
|
1.0
|
C1A
|
A:HEM812
|
3.0
|
20.1
|
1.0
|
CD2
|
A:HIS663
|
3.0
|
22.1
|
1.0
|
C4A
|
A:HEM812
|
3.0
|
20.4
|
1.0
|
C4C
|
A:HEM812
|
3.0
|
19.4
|
1.0
|
C1C
|
A:HEM812
|
3.1
|
19.5
|
1.0
|
CD2
|
A:HIS488
|
3.1
|
18.7
|
1.0
|
C4B
|
A:HEM812
|
3.1
|
19.6
|
1.0
|
C1B
|
A:HEM812
|
3.2
|
19.8
|
1.0
|
CHA
|
A:HEM812
|
3.4
|
20.4
|
1.0
|
CHD
|
A:HEM812
|
3.4
|
19.3
|
1.0
|
CHC
|
A:HEM812
|
3.5
|
19.4
|
1.0
|
CHB
|
A:HEM812
|
3.5
|
20.0
|
1.0
|
ND1
|
A:HIS488
|
4.1
|
18.7
|
1.0
|
ND1
|
A:HIS663
|
4.1
|
21.7
|
1.0
|
CG
|
A:HIS663
|
4.1
|
21.9
|
1.0
|
C3D
|
A:HEM812
|
4.2
|
20.1
|
1.0
|
C2D
|
A:HEM812
|
4.2
|
19.7
|
1.0
|
C2A
|
A:HEM812
|
4.2
|
21.0
|
1.0
|
C3A
|
A:HEM812
|
4.2
|
20.1
|
1.0
|
CG
|
A:HIS488
|
4.2
|
18.7
|
1.0
|
C3C
|
A:HEM812
|
4.3
|
19.4
|
1.0
|
C2C
|
A:HEM812
|
4.3
|
19.2
|
1.0
|
C3B
|
A:HEM812
|
4.4
|
19.3
|
1.0
|
C2B
|
A:HEM812
|
4.4
|
19.4
|
1.0
|
|
Iron binding site 8 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 8 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe813
b:21.9
occ:1.00
|
FE
|
A:HEM813
|
0.0
|
21.9
|
1.0
|
ND
|
A:HEM813
|
1.9
|
23.2
|
1.0
|
NA
|
A:HEM813
|
2.0
|
24.2
|
1.0
|
NE2
|
A:HIS579
|
2.0
|
20.3
|
1.0
|
NE2
|
A:HIS479
|
2.0
|
23.4
|
1.0
|
NC
|
A:HEM813
|
2.1
|
22.2
|
1.0
|
NB
|
A:HEM813
|
2.3
|
22.8
|
1.0
|
C1D
|
A:HEM813
|
2.9
|
22.1
|
1.0
|
C4D
|
A:HEM813
|
2.9
|
23.7
|
1.0
|
CE1
|
A:HIS579
|
2.9
|
20.1
|
1.0
|
C1A
|
A:HEM813
|
3.0
|
24.3
|
1.0
|
CE1
|
A:HIS479
|
3.0
|
23.0
|
1.0
|
C4A
|
A:HEM813
|
3.0
|
24.3
|
1.0
|
CD2
|
A:HIS579
|
3.0
|
20.7
|
1.0
|
C4C
|
A:HEM813
|
3.0
|
21.7
|
1.0
|
CD2
|
A:HIS479
|
3.0
|
23.4
|
1.0
|
C1C
|
A:HEM813
|
3.1
|
22.3
|
1.0
|
C4B
|
A:HEM813
|
3.2
|
22.6
|
1.0
|
C1B
|
A:HEM813
|
3.2
|
23.1
|
1.0
|
CHA
|
A:HEM813
|
3.4
|
24.1
|
1.0
|
CHD
|
A:HEM813
|
3.4
|
22.1
|
1.0
|
CHB
|
A:HEM813
|
3.5
|
23.8
|
1.0
|
CHC
|
A:HEM813
|
3.5
|
22.5
|
1.0
|
ND1
|
A:HIS579
|
4.1
|
20.0
|
1.0
|
ND1
|
A:HIS479
|
4.1
|
22.4
|
1.0
|
CG
|
A:HIS579
|
4.1
|
20.1
|
1.0
|
C3D
|
A:HEM813
|
4.2
|
24.0
|
1.0
|
CG
|
A:HIS479
|
4.2
|
23.4
|
1.0
|
C2D
|
A:HEM813
|
4.2
|
22.8
|
1.0
|
C2A
|
A:HEM813
|
4.2
|
25.6
|
1.0
|
C3A
|
A:HEM813
|
4.2
|
24.6
|
1.0
|
C3C
|
A:HEM813
|
4.2
|
22.0
|
1.0
|
C2C
|
A:HEM813
|
4.3
|
21.8
|
1.0
|
C3B
|
A:HEM813
|
4.4
|
22.8
|
1.0
|
C2B
|
A:HEM813
|
4.4
|
22.8
|
1.0
|
CG2
|
A:THR478
|
4.9
|
25.3
|
1.0
|
|
Iron binding site 9 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 9 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe807
b:21.8
occ:1.00
|
FE
|
B:HEM807
|
0.0
|
21.8
|
1.0
|
ND
|
B:HEM807
|
1.9
|
22.1
|
1.0
|
NA
|
B:HEM807
|
2.0
|
22.2
|
1.0
|
NE2
|
B:HIS348
|
2.0
|
23.2
|
1.0
|
NE2
|
B:HIS147
|
2.0
|
25.0
|
1.0
|
NC
|
B:HEM807
|
2.1
|
21.8
|
1.0
|
NB
|
B:HEM807
|
2.3
|
22.3
|
1.0
|
CE1
|
B:HIS147
|
2.9
|
24.8
|
1.0
|
C4D
|
B:HEM807
|
2.9
|
21.9
|
1.0
|
C1D
|
B:HEM807
|
2.9
|
21.9
|
1.0
|
CE1
|
B:HIS348
|
3.0
|
22.8
|
1.0
|
C1A
|
B:HEM807
|
3.0
|
22.2
|
1.0
|
C4A
|
B:HEM807
|
3.0
|
21.8
|
1.0
|
CD2
|
B:HIS348
|
3.0
|
22.6
|
1.0
|
C4C
|
B:HEM807
|
3.0
|
22.1
|
1.0
|
C1C
|
B:HEM807
|
3.1
|
22.5
|
1.0
|
CD2
|
B:HIS147
|
3.1
|
25.4
|
1.0
|
C4B
|
B:HEM807
|
3.2
|
22.4
|
1.0
|
C1B
|
B:HEM807
|
3.2
|
22.3
|
1.0
|
CHA
|
B:HEM807
|
3.4
|
22.1
|
1.0
|
CHD
|
B:HEM807
|
3.4
|
22.1
|
1.0
|
CHC
|
B:HEM807
|
3.5
|
22.4
|
1.0
|
CHB
|
B:HEM807
|
3.5
|
21.6
|
1.0
|
ND1
|
B:HIS147
|
4.1
|
24.7
|
1.0
|
ND1
|
B:HIS348
|
4.1
|
22.2
|
1.0
|
CG
|
B:HIS348
|
4.2
|
22.1
|
1.0
|
CG
|
B:HIS147
|
4.2
|
24.6
|
1.0
|
C3D
|
B:HEM807
|
4.2
|
21.8
|
1.0
|
C2D
|
B:HEM807
|
4.2
|
22.1
|
1.0
|
C2A
|
B:HEM807
|
4.2
|
22.2
|
1.0
|
C3A
|
B:HEM807
|
4.2
|
21.9
|
1.0
|
C3C
|
B:HEM807
|
4.3
|
22.4
|
1.0
|
C2C
|
B:HEM807
|
4.3
|
22.2
|
1.0
|
C3B
|
B:HEM807
|
4.4
|
22.8
|
1.0
|
C2B
|
B:HEM807
|
4.4
|
22.6
|
1.0
|
|
Iron binding site 10 out
of 96 in 4rkm
Go back to
Iron Binding Sites List in 4rkm
Iron binding site 10 out
of 96 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form I within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe808
b:25.4
occ:1.00
|
FE
|
B:HEM808
|
0.0
|
25.4
|
1.0
|
ND
|
B:HEM808
|
1.9
|
26.0
|
1.0
|
NA
|
B:HEM808
|
2.0
|
26.4
|
1.0
|
NE2
|
B:HIS306
|
2.0
|
20.8
|
1.0
|
NC
|
B:HEM808
|
2.1
|
26.4
|
1.0
|
NB
|
B:HEM808
|
2.3
|
26.3
|
1.0
|
S
|
B:SX802
|
2.3
|
52.3
|
1.0
|
C1D
|
B:HEM808
|
2.9
|
25.4
|
1.0
|
C4D
|
B:HEM808
|
2.9
|
25.5
|
1.0
|
CE1
|
B:HIS306
|
3.0
|
20.6
|
1.0
|
C4A
|
B:HEM808
|
3.0
|
25.9
|
1.0
|
C1A
|
B:HEM808
|
3.0
|
26.1
|
1.0
|
CD2
|
B:HIS306
|
3.0
|
21.0
|
1.0
|
C4C
|
B:HEM808
|
3.1
|
25.6
|
1.0
|
C1C
|
B:HEM808
|
3.1
|
26.2
|
1.0
|
C4B
|
B:HEM808
|
3.2
|
26.2
|
1.0
|
C1B
|
B:HEM808
|
3.2
|
25.8
|
1.0
|
CHD
|
B:HEM808
|
3.4
|
26.0
|
1.0
|
CHA
|
B:HEM808
|
3.4
|
25.8
|
1.0
|
CHB
|
B:HEM808
|
3.5
|
26.0
|
1.0
|
CHC
|
B:HEM808
|
3.5
|
26.2
|
1.0
|
O
|
B:SX802
|
3.6
|
51.0
|
1.0
|
ND1
|
B:HIS306
|
4.1
|
20.7
|
1.0
|
CG
|
B:HIS306
|
4.1
|
20.8
|
1.0
|
C2D
|
B:HEM808
|
4.1
|
25.5
|
1.0
|
O
|
B:HOH1148
|
4.2
|
38.9
|
1.0
|
C3A
|
B:HEM808
|
4.2
|
26.0
|
1.0
|
C3D
|
B:HEM808
|
4.2
|
25.6
|
1.0
|
C2A
|
B:HEM808
|
4.2
|
26.1
|
1.0
|
C3C
|
B:HEM808
|
4.3
|
25.3
|
1.0
|
C2C
|
B:HEM808
|
4.3
|
25.9
|
1.0
|
CU
|
B:CU1801
|
4.4
|
35.5
|
1.0
|
C2B
|
B:HEM808
|
4.4
|
26.0
|
1.0
|
C3B
|
B:HEM808
|
4.5
|
26.1
|
1.0
|
SG
|
B:CYS399
|
4.9
|
27.1
|
1.0
|
|
Reference:
B.Hermann,
M.Kern,
L.La Pietra,
J.Simon,
O.Einsle.
The Octahaem Mcca Is A Haem C-Copper Sulphite Reductase Nature 2015.
ISSN: ESSN 1476-4687
DOI: 10.1038/NATURE14109
Page generated: Mon Aug 5 09:17:53 2024
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