Iron in PDB 4rkn: Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Protein crystallography data
The structure of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II, PDB code: 4rkn
was solved by
B.Hermann,
M.Kern,
L.La Pietra,
J.Simon,
O.Einsle,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.26 /
2.10
|
Space group
|
H 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
186.472,
186.472,
232.836,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
13.5 /
17.5
|
Other elements in 4rkn:
The structure of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 1 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe902
b:19.5
occ:1.00
|
FE
|
A:HEM902
|
0.0
|
19.5
|
1.0
|
ND
|
A:HEM902
|
1.9
|
20.0
|
1.0
|
NA
|
A:HEM902
|
2.1
|
19.4
|
1.0
|
NC
|
A:HEM902
|
2.1
|
19.5
|
1.0
|
NE2
|
A:HIS348
|
2.1
|
20.9
|
1.0
|
NE2
|
A:HIS147
|
2.1
|
17.1
|
1.0
|
NB
|
A:HEM902
|
2.1
|
20.8
|
1.0
|
C1D
|
A:HEM902
|
2.9
|
21.0
|
1.0
|
CE1
|
A:HIS147
|
2.9
|
18.7
|
1.0
|
CE1
|
A:HIS348
|
2.9
|
21.2
|
1.0
|
C4D
|
A:HEM902
|
3.0
|
19.6
|
1.0
|
C4C
|
A:HEM902
|
3.0
|
22.3
|
1.0
|
C4B
|
A:HEM902
|
3.0
|
19.9
|
1.0
|
C1B
|
A:HEM902
|
3.1
|
19.3
|
1.0
|
C4A
|
A:HEM902
|
3.1
|
19.1
|
1.0
|
C1C
|
A:HEM902
|
3.1
|
20.0
|
1.0
|
C1A
|
A:HEM902
|
3.1
|
20.0
|
1.0
|
CD2
|
A:HIS348
|
3.1
|
20.7
|
1.0
|
CD2
|
A:HIS147
|
3.2
|
17.8
|
1.0
|
CHD
|
A:HEM902
|
3.4
|
20.0
|
1.0
|
CHB
|
A:HEM902
|
3.4
|
18.9
|
1.0
|
CHA
|
A:HEM902
|
3.5
|
18.4
|
1.0
|
CHC
|
A:HEM902
|
3.5
|
18.2
|
1.0
|
ND1
|
A:HIS348
|
4.1
|
20.5
|
1.0
|
ND1
|
A:HIS147
|
4.1
|
20.4
|
1.0
|
C2D
|
A:HEM902
|
4.2
|
20.2
|
1.0
|
CG
|
A:HIS348
|
4.2
|
21.2
|
1.0
|
C3D
|
A:HEM902
|
4.2
|
18.8
|
1.0
|
C2B
|
A:HEM902
|
4.2
|
20.3
|
1.0
|
CG
|
A:HIS147
|
4.3
|
20.1
|
1.0
|
C3B
|
A:HEM902
|
4.3
|
19.6
|
1.0
|
C3C
|
A:HEM902
|
4.3
|
22.5
|
1.0
|
C2C
|
A:HEM902
|
4.3
|
20.5
|
1.0
|
C3A
|
A:HEM902
|
4.3
|
19.1
|
1.0
|
C2A
|
A:HEM902
|
4.3
|
20.1
|
1.0
|
|
Iron binding site 2 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 2 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe903
b:19.6
occ:1.00
|
FE
|
A:HEM903
|
0.0
|
19.6
|
1.0
|
ND
|
A:HEM903
|
1.9
|
17.7
|
1.0
|
NA
|
A:HEM903
|
1.9
|
17.4
|
1.0
|
NC
|
A:HEM903
|
2.0
|
16.6
|
1.0
|
NB
|
A:HEM903
|
2.1
|
20.1
|
1.0
|
NE2
|
A:HIS306
|
2.1
|
16.3
|
1.0
|
S
|
A:SO3912
|
2.3
|
22.6
|
1.0
|
C1D
|
A:HEM903
|
2.9
|
17.0
|
1.0
|
C4A
|
A:HEM903
|
3.0
|
20.9
|
1.0
|
CE1
|
A:HIS306
|
3.0
|
17.6
|
1.0
|
C4D
|
A:HEM903
|
3.0
|
18.2
|
1.0
|
C1B
|
A:HEM903
|
3.0
|
20.9
|
1.0
|
C1A
|
A:HEM903
|
3.0
|
19.4
|
1.0
|
C4C
|
A:HEM903
|
3.0
|
18.4
|
1.0
|
C4B
|
A:HEM903
|
3.0
|
20.7
|
1.0
|
C1C
|
A:HEM903
|
3.1
|
19.3
|
1.0
|
CD2
|
A:HIS306
|
3.1
|
18.0
|
1.0
|
CHB
|
A:HEM903
|
3.3
|
20.5
|
1.0
|
CHD
|
A:HEM903
|
3.4
|
17.3
|
1.0
|
O1
|
A:SO3912
|
3.4
|
35.0
|
1.0
|
O2
|
A:SO3912
|
3.4
|
21.7
|
1.0
|
O3
|
A:SO3912
|
3.4
|
25.9
|
1.0
|
CHA
|
A:HEM903
|
3.4
|
16.7
|
1.0
|
CHC
|
A:HEM903
|
3.5
|
19.5
|
1.0
|
ND1
|
A:HIS306
|
4.1
|
17.8
|
1.0
|
C3A
|
A:HEM903
|
4.2
|
20.6
|
1.0
|
CU
|
A:CU910
|
4.2
|
15.2
|
0.4
|
C2D
|
A:HEM903
|
4.2
|
17.0
|
1.0
|
CG
|
A:HIS306
|
4.2
|
18.4
|
1.0
|
C2A
|
A:HEM903
|
4.2
|
18.9
|
1.0
|
C2B
|
A:HEM903
|
4.2
|
22.6
|
1.0
|
C3D
|
A:HEM903
|
4.2
|
18.2
|
1.0
|
C2C
|
A:HEM903
|
4.2
|
18.6
|
1.0
|
C3C
|
A:HEM903
|
4.3
|
17.9
|
1.0
|
C3B
|
A:HEM903
|
4.3
|
20.5
|
1.0
|
O
|
A:HOH1327
|
4.9
|
46.2
|
1.0
|
CMD
|
A:HEM905
|
5.0
|
18.5
|
1.0
|
SG
|
A:CYS399
|
5.0
|
20.3
|
0.6
|
|
Iron binding site 3 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 3 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe904
b:17.1
occ:0.50
|
FE
|
A:HEM904
|
0.0
|
17.1
|
0.5
|
FE
|
A:HEM904
|
0.1
|
18.2
|
0.5
|
ND
|
A:HEM904
|
1.9
|
17.6
|
0.5
|
NA
|
A:HEM904
|
2.0
|
16.8
|
0.5
|
NB
|
A:HEM904
|
2.0
|
18.3
|
0.5
|
ND
|
A:HEM904
|
2.0
|
18.5
|
0.5
|
NA
|
A:HEM904
|
2.0
|
17.8
|
0.5
|
NC
|
A:HEM904
|
2.0
|
17.1
|
0.5
|
NB
|
A:HEM904
|
2.0
|
17.5
|
0.5
|
NC
|
A:HEM904
|
2.1
|
16.4
|
0.5
|
NE2
|
A:HIS343
|
2.1
|
17.8
|
1.0
|
NE2
|
A:HIS425
|
2.2
|
17.5
|
1.0
|
C4B
|
A:HEM904
|
2.9
|
18.7
|
0.5
|
C1A
|
A:HEM904
|
3.0
|
16.9
|
0.5
|
C1D
|
A:HEM904
|
3.0
|
16.8
|
0.5
|
C4D
|
A:HEM904
|
3.0
|
17.4
|
0.5
|
C4B
|
A:HEM904
|
3.0
|
17.7
|
0.5
|
C1B
|
A:HEM904
|
3.0
|
18.8
|
0.5
|
C4A
|
A:HEM904
|
3.0
|
17.2
|
0.5
|
C1D
|
A:HEM904
|
3.0
|
17.6
|
0.5
|
C4A
|
A:HEM904
|
3.0
|
18.6
|
0.5
|
C1C
|
A:HEM904
|
3.0
|
17.1
|
0.5
|
C4C
|
A:HEM904
|
3.0
|
17.7
|
0.5
|
C4D
|
A:HEM904
|
3.0
|
18.3
|
0.5
|
C4C
|
A:HEM904
|
3.0
|
16.9
|
0.5
|
C1B
|
A:HEM904
|
3.0
|
17.8
|
0.5
|
C1C
|
A:HEM904
|
3.0
|
16.4
|
0.5
|
C1A
|
A:HEM904
|
3.0
|
18.1
|
0.5
|
CE1
|
A:HIS343
|
3.0
|
17.8
|
1.0
|
CD2
|
A:HIS343
|
3.2
|
16.4
|
1.0
|
CD2
|
A:HIS425
|
3.2
|
17.6
|
1.0
|
CE1
|
A:HIS425
|
3.3
|
17.9
|
1.0
|
CHC
|
A:HEM904
|
3.4
|
16.5
|
0.5
|
CHA
|
A:HEM904
|
3.4
|
17.0
|
0.5
|
CHC
|
A:HEM904
|
3.4
|
15.8
|
0.5
|
CHB
|
A:HEM904
|
3.4
|
18.0
|
0.5
|
CHD
|
A:HEM904
|
3.4
|
16.6
|
0.5
|
CHD
|
A:HEM904
|
3.4
|
17.4
|
0.5
|
CHB
|
A:HEM904
|
3.4
|
16.9
|
0.5
|
CHA
|
A:HEM904
|
3.4
|
18.2
|
0.5
|
C2A
|
A:HEM904
|
4.1
|
16.7
|
0.5
|
C3A
|
A:HEM904
|
4.2
|
17.0
|
0.5
|
ND1
|
A:HIS343
|
4.2
|
18.5
|
1.0
|
C3B
|
A:HEM904
|
4.2
|
18.8
|
0.5
|
C2B
|
A:HEM904
|
4.2
|
19.5
|
0.5
|
C2C
|
A:HEM904
|
4.2
|
16.9
|
0.5
|
C3A
|
A:HEM904
|
4.2
|
18.4
|
0.5
|
C3C
|
A:HEM904
|
4.2
|
17.6
|
0.5
|
C2C
|
A:HEM904
|
4.2
|
16.2
|
0.5
|
C3C
|
A:HEM904
|
4.2
|
16.9
|
0.5
|
C2D
|
A:HEM904
|
4.2
|
17.5
|
0.5
|
CG
|
A:HIS343
|
4.3
|
17.9
|
1.0
|
C2A
|
A:HEM904
|
4.3
|
17.8
|
0.5
|
C3B
|
A:HEM904
|
4.3
|
17.9
|
0.5
|
C3D
|
A:HEM904
|
4.3
|
17.5
|
0.5
|
C2B
|
A:HEM904
|
4.3
|
18.4
|
0.5
|
C2D
|
A:HEM904
|
4.3
|
18.3
|
0.5
|
C3D
|
A:HEM904
|
4.3
|
18.3
|
0.5
|
CG
|
A:HIS425
|
4.3
|
17.1
|
1.0
|
ND1
|
A:HIS425
|
4.3
|
17.2
|
1.0
|
|
Iron binding site 4 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 4 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe904
b:18.2
occ:0.50
|
FE
|
A:HEM904
|
0.0
|
18.2
|
0.5
|
FE
|
A:HEM904
|
0.1
|
17.1
|
0.5
|
ND
|
A:HEM904
|
1.9
|
17.6
|
0.5
|
NA
|
A:HEM904
|
1.9
|
16.8
|
0.5
|
ND
|
A:HEM904
|
1.9
|
18.5
|
0.5
|
NA
|
A:HEM904
|
2.0
|
17.8
|
0.5
|
NB
|
A:HEM904
|
2.0
|
18.3
|
0.5
|
NC
|
A:HEM904
|
2.1
|
17.1
|
0.5
|
NC
|
A:HEM904
|
2.1
|
16.4
|
0.5
|
NB
|
A:HEM904
|
2.1
|
17.5
|
0.5
|
NE2
|
A:HIS343
|
2.1
|
17.8
|
1.0
|
NE2
|
A:HIS425
|
2.3
|
17.5
|
1.0
|
C4D
|
A:HEM904
|
2.9
|
17.4
|
0.5
|
C1A
|
A:HEM904
|
2.9
|
16.9
|
0.5
|
C1D
|
A:HEM904
|
2.9
|
16.8
|
0.5
|
C1D
|
A:HEM904
|
2.9
|
17.6
|
0.5
|
C4D
|
A:HEM904
|
3.0
|
18.3
|
0.5
|
C4A
|
A:HEM904
|
3.0
|
17.2
|
0.5
|
C4A
|
A:HEM904
|
3.0
|
18.6
|
0.5
|
C4B
|
A:HEM904
|
3.0
|
18.7
|
0.5
|
C1A
|
A:HEM904
|
3.0
|
18.1
|
0.5
|
CE1
|
A:HIS343
|
3.0
|
17.8
|
1.0
|
C1B
|
A:HEM904
|
3.0
|
18.8
|
0.5
|
C4C
|
A:HEM904
|
3.0
|
17.7
|
0.5
|
C4C
|
A:HEM904
|
3.0
|
16.9
|
0.5
|
C4B
|
A:HEM904
|
3.1
|
17.7
|
0.5
|
C1C
|
A:HEM904
|
3.1
|
17.1
|
0.5
|
C1B
|
A:HEM904
|
3.1
|
17.8
|
0.5
|
C1C
|
A:HEM904
|
3.1
|
16.4
|
0.5
|
CD2
|
A:HIS343
|
3.2
|
16.4
|
1.0
|
CD2
|
A:HIS425
|
3.2
|
17.6
|
1.0
|
CE1
|
A:HIS425
|
3.2
|
17.9
|
1.0
|
CHA
|
A:HEM904
|
3.3
|
17.0
|
0.5
|
CHA
|
A:HEM904
|
3.4
|
18.2
|
0.5
|
CHD
|
A:HEM904
|
3.4
|
16.6
|
0.5
|
CHD
|
A:HEM904
|
3.4
|
17.4
|
0.5
|
CHB
|
A:HEM904
|
3.4
|
18.0
|
0.5
|
CHC
|
A:HEM904
|
3.4
|
16.5
|
0.5
|
CHB
|
A:HEM904
|
3.4
|
16.9
|
0.5
|
CHC
|
A:HEM904
|
3.5
|
15.8
|
0.5
|
C2A
|
A:HEM904
|
4.1
|
16.7
|
0.5
|
C3A
|
A:HEM904
|
4.2
|
17.0
|
0.5
|
ND1
|
A:HIS343
|
4.2
|
18.5
|
1.0
|
C3A
|
A:HEM904
|
4.2
|
18.4
|
0.5
|
C2D
|
A:HEM904
|
4.2
|
17.5
|
0.5
|
C3D
|
A:HEM904
|
4.2
|
17.5
|
0.5
|
C2A
|
A:HEM904
|
4.2
|
17.8
|
0.5
|
C2D
|
A:HEM904
|
4.2
|
18.3
|
0.5
|
C3D
|
A:HEM904
|
4.2
|
18.3
|
0.5
|
C3C
|
A:HEM904
|
4.2
|
17.6
|
0.5
|
C2C
|
A:HEM904
|
4.3
|
16.9
|
0.5
|
C2B
|
A:HEM904
|
4.3
|
19.5
|
0.5
|
CG
|
A:HIS343
|
4.3
|
17.9
|
1.0
|
C3B
|
A:HEM904
|
4.3
|
18.8
|
0.5
|
C3C
|
A:HEM904
|
4.3
|
16.9
|
0.5
|
C2C
|
A:HEM904
|
4.3
|
16.2
|
0.5
|
C2B
|
A:HEM904
|
4.3
|
18.4
|
0.5
|
C3B
|
A:HEM904
|
4.3
|
17.9
|
0.5
|
ND1
|
A:HIS425
|
4.3
|
17.2
|
1.0
|
CG
|
A:HIS425
|
4.4
|
17.1
|
1.0
|
|
Iron binding site 5 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 5 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe905
b:17.2
occ:1.00
|
FE
|
A:HEM905
|
0.0
|
17.2
|
1.0
|
ND
|
A:HEM905
|
2.0
|
17.1
|
1.0
|
NA
|
A:HEM905
|
2.0
|
14.5
|
1.0
|
NC
|
A:HEM905
|
2.0
|
15.1
|
1.0
|
NE2
|
A:HIS159
|
2.1
|
16.8
|
1.0
|
NE2
|
A:HIS364
|
2.1
|
15.0
|
1.0
|
NB
|
A:HEM905
|
2.1
|
14.8
|
1.0
|
C1D
|
A:HEM905
|
3.0
|
17.3
|
1.0
|
C4D
|
A:HEM905
|
3.0
|
17.4
|
1.0
|
C1A
|
A:HEM905
|
3.0
|
15.5
|
1.0
|
C4A
|
A:HEM905
|
3.0
|
14.7
|
1.0
|
CE1
|
A:HIS159
|
3.0
|
17.1
|
1.0
|
C4C
|
A:HEM905
|
3.0
|
16.5
|
1.0
|
C1C
|
A:HEM905
|
3.1
|
17.5
|
1.0
|
CD2
|
A:HIS364
|
3.1
|
14.3
|
1.0
|
C1B
|
A:HEM905
|
3.1
|
15.0
|
1.0
|
CE1
|
A:HIS364
|
3.1
|
14.4
|
1.0
|
C4B
|
A:HEM905
|
3.1
|
17.4
|
1.0
|
CD2
|
A:HIS159
|
3.1
|
18.6
|
1.0
|
CHD
|
A:HEM905
|
3.4
|
16.1
|
1.0
|
CHA
|
A:HEM905
|
3.4
|
17.8
|
1.0
|
CHB
|
A:HEM905
|
3.5
|
13.9
|
1.0
|
CHC
|
A:HEM905
|
3.5
|
17.1
|
1.0
|
ND1
|
A:HIS159
|
4.2
|
18.1
|
1.0
|
ND1
|
A:HIS364
|
4.2
|
14.1
|
1.0
|
C3A
|
A:HEM905
|
4.2
|
15.7
|
1.0
|
CG
|
A:HIS364
|
4.2
|
15.0
|
1.0
|
C2A
|
A:HEM905
|
4.2
|
15.7
|
1.0
|
CG
|
A:HIS159
|
4.2
|
18.7
|
1.0
|
C2C
|
A:HEM905
|
4.3
|
16.4
|
1.0
|
C3D
|
A:HEM905
|
4.3
|
19.1
|
1.0
|
C2D
|
A:HEM905
|
4.3
|
17.4
|
1.0
|
C3C
|
A:HEM905
|
4.3
|
15.5
|
1.0
|
C2B
|
A:HEM905
|
4.3
|
15.3
|
1.0
|
C3B
|
A:HEM905
|
4.4
|
16.5
|
1.0
|
|
Iron binding site 6 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 6 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe906
b:16.7
occ:1.00
|
FE
|
A:HEM906
|
0.0
|
16.7
|
1.0
|
ND
|
A:HEM906
|
1.9
|
16.5
|
1.0
|
NA
|
A:HEM906
|
2.0
|
16.9
|
1.0
|
NE2
|
A:HIS422
|
2.0
|
16.9
|
1.0
|
NB
|
A:HEM906
|
2.1
|
16.3
|
1.0
|
NC
|
A:HEM906
|
2.1
|
14.8
|
1.0
|
NE2
|
A:HIS516
|
2.2
|
16.4
|
1.0
|
C1D
|
A:HEM906
|
2.9
|
16.7
|
1.0
|
C4D
|
A:HEM906
|
3.0
|
16.9
|
1.0
|
CE1
|
A:HIS422
|
3.0
|
15.9
|
1.0
|
C1B
|
A:HEM906
|
3.0
|
16.5
|
1.0
|
CD2
|
A:HIS516
|
3.0
|
16.0
|
1.0
|
C4A
|
A:HEM906
|
3.0
|
15.1
|
1.0
|
C4B
|
A:HEM906
|
3.0
|
16.3
|
1.0
|
C1A
|
A:HEM906
|
3.0
|
16.4
|
1.0
|
CD2
|
A:HIS422
|
3.1
|
17.2
|
1.0
|
C4C
|
A:HEM906
|
3.1
|
14.5
|
1.0
|
C1C
|
A:HEM906
|
3.1
|
15.6
|
1.0
|
CE1
|
A:HIS516
|
3.2
|
14.7
|
1.0
|
CHB
|
A:HEM906
|
3.4
|
15.6
|
1.0
|
CHA
|
A:HEM906
|
3.4
|
16.1
|
1.0
|
CHD
|
A:HEM906
|
3.4
|
14.3
|
1.0
|
CHC
|
A:HEM906
|
3.5
|
15.0
|
1.0
|
ND1
|
A:HIS422
|
4.1
|
14.7
|
1.0
|
CG
|
A:HIS422
|
4.2
|
16.0
|
1.0
|
C3A
|
A:HEM906
|
4.2
|
16.4
|
1.0
|
CG
|
A:HIS516
|
4.2
|
15.7
|
1.0
|
C3D
|
A:HEM906
|
4.2
|
17.6
|
1.0
|
C2D
|
A:HEM906
|
4.2
|
17.6
|
1.0
|
C2A
|
A:HEM906
|
4.3
|
18.6
|
1.0
|
C2B
|
A:HEM906
|
4.3
|
16.9
|
1.0
|
ND1
|
A:HIS516
|
4.3
|
15.3
|
1.0
|
C3B
|
A:HEM906
|
4.3
|
15.2
|
1.0
|
C2C
|
A:HEM906
|
4.3
|
13.7
|
1.0
|
C3C
|
A:HEM906
|
4.3
|
14.4
|
1.0
|
CE
|
A:MET489
|
4.7
|
18.1
|
1.0
|
|
Iron binding site 7 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 7 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe907
b:17.1
occ:1.00
|
FE
|
A:HEM907
|
0.0
|
17.1
|
1.0
|
ND
|
A:HEM907
|
1.9
|
16.4
|
1.0
|
NA
|
A:HEM907
|
2.0
|
15.8
|
1.0
|
NC
|
A:HEM907
|
2.1
|
16.9
|
1.0
|
NB
|
A:HEM907
|
2.1
|
17.1
|
1.0
|
NE2
|
A:HIS411
|
2.1
|
17.2
|
1.0
|
NE2
|
A:HIS466
|
2.1
|
18.9
|
1.0
|
C4D
|
A:HEM907
|
2.9
|
16.3
|
1.0
|
C1D
|
A:HEM907
|
3.0
|
16.5
|
1.0
|
C4B
|
A:HEM907
|
3.0
|
16.6
|
1.0
|
C1B
|
A:HEM907
|
3.0
|
16.5
|
1.0
|
C1A
|
A:HEM907
|
3.0
|
15.4
|
1.0
|
C1C
|
A:HEM907
|
3.1
|
17.0
|
1.0
|
CD2
|
A:HIS411
|
3.1
|
16.5
|
1.0
|
C4C
|
A:HEM907
|
3.1
|
17.1
|
1.0
|
C4A
|
A:HEM907
|
3.1
|
14.7
|
1.0
|
CE1
|
A:HIS411
|
3.1
|
17.9
|
1.0
|
CE1
|
A:HIS466
|
3.1
|
16.8
|
1.0
|
CD2
|
A:HIS466
|
3.1
|
19.3
|
1.0
|
CHC
|
A:HEM907
|
3.4
|
15.8
|
1.0
|
CHA
|
A:HEM907
|
3.4
|
15.9
|
1.0
|
CHB
|
A:HEM907
|
3.4
|
15.5
|
1.0
|
CHD
|
A:HEM907
|
3.5
|
18.6
|
1.0
|
ND1
|
A:HIS411
|
4.2
|
18.3
|
1.0
|
ND1
|
A:HIS466
|
4.2
|
18.0
|
1.0
|
CG
|
A:HIS411
|
4.2
|
15.9
|
1.0
|
C3D
|
A:HEM907
|
4.2
|
17.8
|
1.0
|
CG
|
A:HIS466
|
4.2
|
19.0
|
1.0
|
C2D
|
A:HEM907
|
4.2
|
16.4
|
1.0
|
C2B
|
A:HEM907
|
4.2
|
17.1
|
1.0
|
C2A
|
A:HEM907
|
4.3
|
15.5
|
1.0
|
C3B
|
A:HEM907
|
4.3
|
16.1
|
1.0
|
C3A
|
A:HEM907
|
4.3
|
16.1
|
1.0
|
C2C
|
A:HEM907
|
4.3
|
17.8
|
1.0
|
C3C
|
A:HEM907
|
4.3
|
18.0
|
1.0
|
|
Iron binding site 8 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 8 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe908
b:19.2
occ:1.00
|
FE
|
A:HEM908
|
0.0
|
19.2
|
1.0
|
ND
|
A:HEM908
|
1.9
|
17.3
|
1.0
|
NA
|
A:HEM908
|
2.0
|
16.9
|
1.0
|
NB
|
A:HEM908
|
2.0
|
16.9
|
1.0
|
NC
|
A:HEM908
|
2.1
|
17.6
|
1.0
|
NE2
|
A:HIS663
|
2.1
|
20.0
|
1.0
|
NE2
|
A:HIS488
|
2.1
|
16.6
|
1.0
|
C4D
|
A:HEM908
|
2.9
|
16.7
|
1.0
|
C1D
|
A:HEM908
|
2.9
|
18.3
|
1.0
|
C1B
|
A:HEM908
|
3.0
|
18.8
|
1.0
|
C1A
|
A:HEM908
|
3.0
|
17.2
|
1.0
|
C4B
|
A:HEM908
|
3.0
|
18.0
|
1.0
|
CE1
|
A:HIS488
|
3.0
|
15.9
|
1.0
|
C4A
|
A:HEM908
|
3.0
|
16.8
|
1.0
|
CE1
|
A:HIS663
|
3.1
|
19.2
|
1.0
|
CD2
|
A:HIS663
|
3.1
|
19.3
|
1.0
|
C4C
|
A:HEM908
|
3.1
|
16.7
|
1.0
|
CD2
|
A:HIS488
|
3.1
|
15.3
|
1.0
|
C1C
|
A:HEM908
|
3.1
|
17.6
|
1.0
|
CHA
|
A:HEM908
|
3.4
|
18.9
|
1.0
|
CHB
|
A:HEM908
|
3.4
|
18.1
|
1.0
|
CHD
|
A:HEM908
|
3.4
|
16.8
|
1.0
|
CHC
|
A:HEM908
|
3.5
|
18.1
|
1.0
|
ND1
|
A:HIS488
|
4.2
|
14.9
|
1.0
|
ND1
|
A:HIS663
|
4.2
|
19.7
|
1.0
|
CG
|
A:HIS663
|
4.2
|
18.7
|
1.0
|
C2B
|
A:HEM908
|
4.2
|
17.8
|
1.0
|
CG
|
A:HIS488
|
4.2
|
16.4
|
1.0
|
C2D
|
A:HEM908
|
4.2
|
16.4
|
1.0
|
C3D
|
A:HEM908
|
4.2
|
18.7
|
1.0
|
C2A
|
A:HEM908
|
4.2
|
16.8
|
1.0
|
C3A
|
A:HEM908
|
4.2
|
15.9
|
1.0
|
C3B
|
A:HEM908
|
4.2
|
17.8
|
1.0
|
C2C
|
A:HEM908
|
4.3
|
17.8
|
1.0
|
C3C
|
A:HEM908
|
4.3
|
16.9
|
1.0
|
|
Iron binding site 9 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 9 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe909
b:24.2
occ:1.00
|
FE
|
A:HEM909
|
0.0
|
24.2
|
1.0
|
ND
|
A:HEM909
|
1.9
|
24.1
|
1.0
|
NA
|
A:HEM909
|
2.0
|
23.8
|
1.0
|
NB
|
A:HEM909
|
2.1
|
22.2
|
1.0
|
NC
|
A:HEM909
|
2.1
|
23.1
|
1.0
|
NE2
|
A:HIS479
|
2.1
|
24.8
|
1.0
|
NE2
|
A:HIS579
|
2.1
|
25.7
|
1.0
|
C1D
|
A:HEM909
|
3.0
|
24.9
|
1.0
|
C4D
|
A:HEM909
|
3.0
|
25.7
|
1.0
|
CE1
|
A:HIS579
|
3.0
|
27.9
|
1.0
|
C4B
|
A:HEM909
|
3.0
|
21.0
|
1.0
|
C4A
|
A:HEM909
|
3.0
|
23.7
|
1.0
|
C1A
|
A:HEM909
|
3.0
|
25.5
|
1.0
|
C4C
|
A:HEM909
|
3.0
|
23.8
|
1.0
|
C1B
|
A:HEM909
|
3.1
|
22.4
|
1.0
|
C1C
|
A:HEM909
|
3.1
|
20.8
|
1.0
|
CE1
|
A:HIS479
|
3.1
|
23.0
|
1.0
|
CD2
|
A:HIS479
|
3.1
|
22.4
|
1.0
|
CD2
|
A:HIS579
|
3.2
|
26.4
|
1.0
|
CHD
|
A:HEM909
|
3.4
|
22.6
|
1.0
|
CHC
|
A:HEM909
|
3.4
|
19.3
|
1.0
|
CHA
|
A:HEM909
|
3.4
|
26.7
|
1.0
|
CHB
|
A:HEM909
|
3.4
|
21.5
|
1.0
|
ND1
|
A:HIS579
|
4.2
|
27.3
|
1.0
|
ND1
|
A:HIS479
|
4.2
|
22.9
|
1.0
|
C3A
|
A:HEM909
|
4.2
|
23.5
|
1.0
|
C2A
|
A:HEM909
|
4.2
|
27.2
|
1.0
|
CG
|
A:HIS479
|
4.2
|
22.3
|
1.0
|
C2D
|
A:HEM909
|
4.2
|
25.8
|
1.0
|
C2B
|
A:HEM909
|
4.2
|
21.1
|
1.0
|
C3D
|
A:HEM909
|
4.2
|
29.4
|
1.0
|
C2C
|
A:HEM909
|
4.2
|
21.3
|
1.0
|
C3B
|
A:HEM909
|
4.2
|
20.0
|
1.0
|
CG
|
A:HIS579
|
4.3
|
25.5
|
1.0
|
C3C
|
A:HEM909
|
4.3
|
22.7
|
1.0
|
CG2
|
A:THR478
|
4.9
|
29.1
|
1.0
|
|
Iron binding site 10 out
of 36 in 4rkn
Go back to
Iron Binding Sites List in 4rkn
Iron binding site 10 out
of 36 in the Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Wolinella Succinogenes Octaheme Sulfite Reductase Mcca, Form II within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe902
b:19.3
occ:1.00
|
FE
|
B:HEM902
|
0.0
|
19.3
|
1.0
|
ND
|
B:HEM902
|
1.9
|
16.7
|
1.0
|
NA
|
B:HEM902
|
2.0
|
17.8
|
1.0
|
NB
|
B:HEM902
|
2.0
|
18.4
|
1.0
|
NC
|
B:HEM902
|
2.1
|
17.7
|
1.0
|
NE2
|
B:HIS147
|
2.1
|
17.7
|
1.0
|
NE2
|
B:HIS348
|
2.1
|
20.5
|
1.0
|
C1D
|
B:HEM902
|
2.9
|
17.2
|
1.0
|
C4D
|
B:HEM902
|
2.9
|
17.7
|
1.0
|
C4B
|
B:HEM902
|
3.0
|
18.4
|
1.0
|
C1A
|
B:HEM902
|
3.0
|
19.7
|
1.0
|
CE1
|
B:HIS147
|
3.0
|
17.9
|
1.0
|
C1B
|
B:HEM902
|
3.0
|
19.1
|
1.0
|
C4A
|
B:HEM902
|
3.1
|
18.0
|
1.0
|
C4C
|
B:HEM902
|
3.1
|
17.3
|
1.0
|
CE1
|
B:HIS348
|
3.1
|
23.4
|
1.0
|
C1C
|
B:HEM902
|
3.1
|
18.7
|
1.0
|
CD2
|
B:HIS348
|
3.2
|
22.4
|
1.0
|
CD2
|
B:HIS147
|
3.2
|
18.8
|
1.0
|
CHA
|
B:HEM902
|
3.4
|
18.7
|
1.0
|
CHD
|
B:HEM902
|
3.4
|
18.6
|
1.0
|
CHC
|
B:HEM902
|
3.4
|
18.4
|
1.0
|
CHB
|
B:HEM902
|
3.5
|
18.2
|
1.0
|
C2D
|
B:HEM902
|
4.2
|
16.7
|
1.0
|
ND1
|
B:HIS147
|
4.2
|
18.1
|
1.0
|
ND1
|
B:HIS348
|
4.2
|
23.3
|
1.0
|
C3D
|
B:HEM902
|
4.2
|
16.9
|
1.0
|
C3A
|
B:HEM902
|
4.2
|
16.7
|
1.0
|
C2A
|
B:HEM902
|
4.3
|
18.5
|
1.0
|
C2B
|
B:HEM902
|
4.3
|
18.8
|
1.0
|
C3B
|
B:HEM902
|
4.3
|
17.8
|
1.0
|
CG
|
B:HIS147
|
4.3
|
17.7
|
1.0
|
C2C
|
B:HEM902
|
4.3
|
17.4
|
1.0
|
CG
|
B:HIS348
|
4.3
|
21.8
|
1.0
|
C3C
|
B:HEM902
|
4.3
|
17.6
|
1.0
|
|
Reference:
B.Hermann,
M.Kern,
L.La Pietra,
J.Simon,
O.Einsle.
The Octahaem Mcca Is A Haem C-Copper Sulphite Reductase Nature 2015.
ISSN: ESSN 1476-4687
DOI: 10.1038/NATURE14109
Page generated: Mon Aug 5 09:18:29 2024
|