Iron in PDB 4rxn: Crystallographic Refinement of Rubredoxin at 1.2 Angstroms Resolution

Protein crystallography data

The structure of Crystallographic Refinement of Rubredoxin at 1.2 Angstroms Resolution, PDB code: 4rxn was solved by K.D.Watenpaugh, L.C.Sieker, L.H.Jensen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.20
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 64.290, 64.290, 32.490, 90.00, 90.00, 120.00
R / Rfree (%) 12.8 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Crystallographic Refinement of Rubredoxin at 1.2 Angstroms Resolution (pdb code 4rxn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystallographic Refinement of Rubredoxin at 1.2 Angstroms Resolution, PDB code: 4rxn:

Iron binding site 1 out of 1 in 4rxn

Go back to Iron Binding Sites List in 4rxn
Iron binding site 1 out of 1 in the Crystallographic Refinement of Rubredoxin at 1.2 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystallographic Refinement of Rubredoxin at 1.2 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe55

b:14.2
occ:1.00
SG A:CYS42 2.2 16.8 1.0
SG A:CYS9 2.3 15.6 1.0
SG A:CYS39 2.3 13.0 1.0
SG A:CYS6 2.3 12.5 1.0
HB3 A:CYS6 3.1 7.7 1.0
CB A:CYS39 3.2 12.3 1.0
CB A:CYS6 3.2 7.7 1.0
H A:CYS42 3.2 14.3 1.0
HB3 A:CYS39 3.2 12.3 1.0
HB3 A:CYS9 3.2 12.8 1.0
HB2 A:CYS39 3.3 12.3 1.0
HB3 A:CYS42 3.3 15.3 1.0
H A:CYS9 3.3 10.3 1.0
HB2 A:CYS6 3.3 7.7 1.0
CB A:CYS42 3.4 15.3 1.0
CB A:CYS9 3.4 12.8 1.0
HB3 A:TYR11 3.5 10.6 1.0
HG21 A:VAL44 3.5 16.5 1.0
N A:CYS9 3.8 10.3 1.0
HB2 A:LEU41 3.9 19.0 1.0
N A:CYS42 3.9 14.3 1.0
HB A:VAL8 3.9 17.3 1.0
H A:TYR11 3.9 9.4 1.0
CA A:CYS42 4.1 11.5 1.0
CA A:CYS9 4.1 9.8 1.0
HB2 A:CYS9 4.2 12.8 1.0
HB2 A:CYS42 4.2 15.3 1.0
HB2 A:TYR11 4.2 10.6 1.0
CB A:TYR11 4.4 10.6 1.0
H A:VAL44 4.4 11.0 1.0
HG11 A:VAL8 4.4 15.9 1.0
H A:LEU41 4.4 14.5 1.0
CG2 A:VAL44 4.5 16.5 1.0
H A:GLY10 4.5 11.4 1.0
H A:GLY43 4.5 14.6 1.0
H A:VAL8 4.5 12.5 1.0
CA A:CYS6 4.6 8.3 1.0
CA A:CYS39 4.6 10.2 1.0
HG23 A:VAL44 4.6 16.5 1.0
C A:CYS9 4.7 11.1 1.0
C A:CYS42 4.7 15.8 1.0
HZ A:PHE49 4.7 11.1 1.0
CB A:VAL8 4.8 17.3 1.0
C A:VAL8 4.8 14.0 1.0
N A:TYR11 4.8 9.4 1.0
CB A:LEU41 4.8 19.0 1.0
HD2 A:TYR11 4.9 15.3 1.0
HA A:CYS6 4.9 8.3 1.0
C A:LEU41 4.9 26.1 1.0
HG22 A:VAL44 4.9 16.5 1.0
N A:GLY10 4.9 11.4 1.0
N A:GLY43 4.9 14.6 1.0
HA A:CYS42 4.9 11.5 1.0
CG1 A:VAL8 4.9 15.9 1.0
HA A:CYS39 4.9 10.2 1.0
HA A:CYS9 4.9 9.8 1.0
HG12 A:VAL44 5.0 15.3 1.0
HG13 A:VAL8 5.0 15.9 1.0
HB3 A:LEU41 5.0 19.0 1.0

Reference:

K.D.Watenpaugh, L.C.Sieker, L.H.Jensen. Crystallographic Refinement of Rubredoxin at 1 X 2 A Degrees Resolution. J.Mol.Biol. V. 138 615 1980.
ISSN: ISSN 0022-2836
PubMed: 7411618
DOI: 10.1016/S0022-2836(80)80020-9
Page generated: Sun Dec 13 15:46:23 2020

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