Iron in PDB 4tod: 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
Enzymatic activity of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
All present enzymatic activity of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa:
1.16.3.1;
Protein crystallography data
The structure of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa, PDB code: 4tod
was solved by
S.Lovell,
K.P.Battaile,
H.Yao,
R.Kumar,
K.Eshelman,
M.Rivera,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
41.06 /
2.05
|
|
Space group
|
P 21 21 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
125.678,
203.538,
206.973,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
15.3 /
19.2
|
Other elements in 4tod:
The structure of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
(pdb code 4tod). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa, PDB code: 4tod:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 1 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:21.8
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
21.8
|
1.0
|
|
NC
|
A:HEM201
|
2.0
|
23.4
|
1.0
|
|
NA
|
A:HEM201
|
2.0
|
19.2
|
1.0
|
|
NB
|
A:HEM201
|
2.0
|
21.1
|
1.0
|
|
ND
|
A:HEM201
|
2.1
|
25.0
|
1.0
|
|
SD
|
B:MET52
|
2.3
|
19.8
|
1.0
|
|
SD
|
A:MET52
|
2.3
|
20.9
|
1.0
|
|
C4B
|
A:HEM201
|
2.9
|
18.3
|
1.0
|
|
C1A
|
A:HEM201
|
3.0
|
24.4
|
1.0
|
|
C1C
|
A:HEM201
|
3.0
|
20.8
|
1.0
|
|
C4D
|
A:HEM201
|
3.0
|
21.8
|
1.0
|
|
C4C
|
A:HEM201
|
3.0
|
21.5
|
1.0
|
|
C4A
|
A:HEM201
|
3.1
|
22.7
|
1.0
|
|
C1D
|
A:HEM201
|
3.1
|
20.6
|
1.0
|
|
C1B
|
A:HEM201
|
3.2
|
18.4
|
1.0
|
|
CE
|
B:MET52
|
3.3
|
19.3
|
1.0
|
|
CHC
|
A:HEM201
|
3.3
|
21.5
|
1.0
|
|
CE
|
A:MET52
|
3.4
|
24.8
|
1.0
|
|
CHA
|
A:HEM201
|
3.4
|
20.7
|
1.0
|
|
CHD
|
A:HEM201
|
3.4
|
22.0
|
1.0
|
|
CG
|
B:MET52
|
3.5
|
20.3
|
1.0
|
|
CG
|
A:MET52
|
3.5
|
20.7
|
1.0
|
|
CHB
|
A:HEM201
|
3.5
|
18.3
|
1.0
|
|
C3B
|
A:HEM201
|
4.2
|
23.3
|
1.0
|
|
CB
|
B:MET52
|
4.2
|
17.8
|
1.0
|
|
CB
|
A:MET52
|
4.2
|
21.8
|
1.0
|
|
C3C
|
A:HEM201
|
4.2
|
22.2
|
1.0
|
|
C2A
|
A:HEM201
|
4.3
|
23.3
|
1.0
|
|
C2C
|
A:HEM201
|
4.3
|
22.6
|
1.0
|
|
C3A
|
A:HEM201
|
4.3
|
24.7
|
1.0
|
|
C3D
|
A:HEM201
|
4.3
|
23.5
|
1.0
|
|
C2B
|
A:HEM201
|
4.3
|
22.0
|
1.0
|
|
C2D
|
A:HEM201
|
4.3
|
22.0
|
1.0
|
|
Iron binding site 2 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 2 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:20.5
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
20.5
|
1.0
|
|
NC
|
C:HEM201
|
2.0
|
23.0
|
1.0
|
|
NA
|
C:HEM201
|
2.0
|
19.8
|
1.0
|
|
NB
|
C:HEM201
|
2.0
|
20.5
|
1.0
|
|
ND
|
C:HEM201
|
2.1
|
19.1
|
1.0
|
|
SD
|
D:MET52
|
2.4
|
20.9
|
1.0
|
|
SD
|
C:MET52
|
2.4
|
20.9
|
1.0
|
|
C1A
|
C:HEM201
|
3.0
|
21.0
|
1.0
|
|
C1C
|
C:HEM201
|
3.0
|
22.5
|
1.0
|
|
C4D
|
C:HEM201
|
3.0
|
20.8
|
1.0
|
|
C4B
|
C:HEM201
|
3.0
|
20.7
|
1.0
|
|
C4C
|
C:HEM201
|
3.1
|
23.0
|
1.0
|
|
C1B
|
C:HEM201
|
3.1
|
20.5
|
1.0
|
|
C4A
|
C:HEM201
|
3.1
|
21.3
|
1.0
|
|
C1D
|
C:HEM201
|
3.1
|
22.0
|
1.0
|
|
CHA
|
C:HEM201
|
3.3
|
19.3
|
1.0
|
|
CHC
|
C:HEM201
|
3.3
|
21.0
|
1.0
|
|
CE
|
D:MET52
|
3.3
|
20.2
|
1.0
|
|
CE
|
C:MET52
|
3.4
|
19.0
|
1.0
|
|
CHD
|
C:HEM201
|
3.5
|
22.8
|
1.0
|
|
CG
|
C:MET52
|
3.5
|
23.1
|
1.0
|
|
CG
|
D:MET52
|
3.5
|
21.8
|
1.0
|
|
CHB
|
C:HEM201
|
3.5
|
20.6
|
1.0
|
|
CB
|
D:MET52
|
4.2
|
20.7
|
1.0
|
|
C2A
|
C:HEM201
|
4.2
|
23.1
|
1.0
|
|
C3B
|
C:HEM201
|
4.2
|
20.9
|
1.0
|
|
C2C
|
C:HEM201
|
4.2
|
27.2
|
1.0
|
|
CB
|
C:MET52
|
4.2
|
21.0
|
1.0
|
|
C3D
|
C:HEM201
|
4.3
|
22.2
|
1.0
|
|
C3C
|
C:HEM201
|
4.3
|
22.7
|
1.0
|
|
C3A
|
C:HEM201
|
4.3
|
20.8
|
1.0
|
|
C2B
|
C:HEM201
|
4.3
|
19.5
|
1.0
|
|
C2D
|
C:HEM201
|
4.4
|
23.4
|
1.0
|
|
Iron binding site 3 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 3 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:20.7
occ:1.00
|
FE
|
F:HEM201
|
0.0
|
20.7
|
1.0
|
|
NC
|
F:HEM201
|
2.0
|
21.5
|
1.0
|
|
NB
|
F:HEM201
|
2.0
|
20.5
|
1.0
|
|
ND
|
F:HEM201
|
2.0
|
22.8
|
1.0
|
|
NA
|
F:HEM201
|
2.0
|
22.0
|
1.0
|
|
SD
|
E:MET52
|
2.3
|
20.9
|
1.0
|
|
SD
|
F:MET52
|
2.4
|
21.2
|
1.0
|
|
C4B
|
F:HEM201
|
3.0
|
20.3
|
1.0
|
|
C4C
|
F:HEM201
|
3.0
|
22.1
|
1.0
|
|
C1C
|
F:HEM201
|
3.0
|
19.1
|
1.0
|
|
C4D
|
F:HEM201
|
3.0
|
21.4
|
1.0
|
|
C1A
|
F:HEM201
|
3.0
|
23.3
|
1.0
|
|
C1D
|
F:HEM201
|
3.1
|
21.5
|
1.0
|
|
C4A
|
F:HEM201
|
3.1
|
21.1
|
1.0
|
|
C1B
|
F:HEM201
|
3.1
|
22.6
|
1.0
|
|
CE
|
F:MET52
|
3.3
|
20.0
|
1.0
|
|
CE
|
E:MET52
|
3.3
|
23.0
|
1.0
|
|
CHA
|
F:HEM201
|
3.4
|
23.4
|
1.0
|
|
CHC
|
F:HEM201
|
3.4
|
19.9
|
1.0
|
|
CHD
|
F:HEM201
|
3.4
|
18.0
|
1.0
|
|
CG
|
E:MET52
|
3.5
|
21.5
|
1.0
|
|
CHB
|
F:HEM201
|
3.5
|
19.7
|
1.0
|
|
CG
|
F:MET52
|
3.6
|
21.9
|
1.0
|
|
CB
|
F:MET52
|
4.2
|
20.1
|
1.0
|
|
CB
|
E:MET52
|
4.2
|
20.1
|
1.0
|
|
C3C
|
F:HEM201
|
4.2
|
20.6
|
1.0
|
|
C3B
|
F:HEM201
|
4.2
|
21.9
|
1.0
|
|
C2C
|
F:HEM201
|
4.2
|
18.8
|
1.0
|
|
C3D
|
F:HEM201
|
4.3
|
22.8
|
1.0
|
|
C2A
|
F:HEM201
|
4.3
|
26.7
|
1.0
|
|
C2D
|
F:HEM201
|
4.3
|
21.1
|
1.0
|
|
C3A
|
F:HEM201
|
4.3
|
22.0
|
1.0
|
|
C2B
|
F:HEM201
|
4.3
|
22.1
|
1.0
|
|
Iron binding site 4 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 4 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:18.8
occ:1.00
|
FE
|
H:HEM201
|
0.0
|
18.8
|
1.0
|
|
NB
|
H:HEM201
|
2.0
|
18.5
|
1.0
|
|
NA
|
H:HEM201
|
2.0
|
20.2
|
1.0
|
|
NC
|
H:HEM201
|
2.0
|
17.7
|
1.0
|
|
ND
|
H:HEM201
|
2.0
|
16.2
|
1.0
|
|
SD
|
H:MET52
|
2.3
|
18.9
|
1.0
|
|
SD
|
G:MET52
|
2.4
|
17.7
|
1.0
|
|
C4B
|
H:HEM201
|
3.0
|
20.9
|
1.0
|
|
C4D
|
H:HEM201
|
3.0
|
19.4
|
1.0
|
|
C1A
|
H:HEM201
|
3.0
|
18.7
|
1.0
|
|
C4C
|
H:HEM201
|
3.0
|
19.8
|
1.0
|
|
C1B
|
H:HEM201
|
3.0
|
20.8
|
1.0
|
|
C4A
|
H:HEM201
|
3.1
|
19.1
|
1.0
|
|
C1C
|
H:HEM201
|
3.1
|
20.8
|
1.0
|
|
C1D
|
H:HEM201
|
3.1
|
20.2
|
1.0
|
|
CE
|
G:MET52
|
3.3
|
19.8
|
1.0
|
|
CE
|
H:MET52
|
3.4
|
19.1
|
1.0
|
|
CHA
|
H:HEM201
|
3.4
|
18.9
|
1.0
|
|
CHC
|
H:HEM201
|
3.4
|
22.4
|
1.0
|
|
CHB
|
H:HEM201
|
3.4
|
20.4
|
1.0
|
|
CHD
|
H:HEM201
|
3.4
|
20.0
|
1.0
|
|
CG
|
H:MET52
|
3.4
|
17.4
|
1.0
|
|
CG
|
G:MET52
|
3.6
|
18.0
|
1.0
|
|
CB
|
H:MET52
|
4.2
|
15.8
|
1.0
|
|
C3B
|
H:HEM201
|
4.2
|
19.9
|
1.0
|
|
CB
|
G:MET52
|
4.2
|
21.8
|
1.0
|
|
C2B
|
H:HEM201
|
4.3
|
19.0
|
1.0
|
|
C2A
|
H:HEM201
|
4.3
|
20.7
|
1.0
|
|
C3C
|
H:HEM201
|
4.3
|
19.0
|
1.0
|
|
C3D
|
H:HEM201
|
4.3
|
18.0
|
1.0
|
|
C3A
|
H:HEM201
|
4.3
|
16.5
|
1.0
|
|
C2C
|
H:HEM201
|
4.3
|
17.4
|
1.0
|
|
C2D
|
H:HEM201
|
4.3
|
21.0
|
1.0
|
|
Iron binding site 5 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 5 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe201
b:21.1
occ:1.00
|
FE
|
J:HEM201
|
0.0
|
21.1
|
1.0
|
|
NC
|
J:HEM201
|
2.0
|
20.6
|
1.0
|
|
NB
|
J:HEM201
|
2.1
|
19.6
|
1.0
|
|
ND
|
J:HEM201
|
2.1
|
20.9
|
1.0
|
|
NA
|
J:HEM201
|
2.1
|
22.4
|
1.0
|
|
SD
|
J:MET52
|
2.3
|
20.8
|
1.0
|
|
SD
|
I:MET52
|
2.3
|
20.4
|
1.0
|
|
C4B
|
J:HEM201
|
3.0
|
23.0
|
1.0
|
|
C1C
|
J:HEM201
|
3.0
|
25.7
|
1.0
|
|
C4D
|
J:HEM201
|
3.0
|
20.5
|
1.0
|
|
C1A
|
J:HEM201
|
3.0
|
23.4
|
1.0
|
|
C1D
|
J:HEM201
|
3.1
|
25.7
|
1.0
|
|
C4C
|
J:HEM201
|
3.1
|
22.1
|
1.0
|
|
C1B
|
J:HEM201
|
3.2
|
23.7
|
1.0
|
|
C4A
|
J:HEM201
|
3.2
|
24.7
|
1.0
|
|
CHC
|
J:HEM201
|
3.3
|
20.0
|
1.0
|
|
CE
|
I:MET52
|
3.3
|
20.1
|
1.0
|
|
CHA
|
J:HEM201
|
3.4
|
19.9
|
1.0
|
|
CE
|
J:MET52
|
3.4
|
19.1
|
1.0
|
|
CHD
|
J:HEM201
|
3.4
|
21.7
|
1.0
|
|
CG
|
I:MET52
|
3.4
|
27.3
|
1.0
|
|
CG
|
J:MET52
|
3.5
|
20.8
|
1.0
|
|
CHB
|
J:HEM201
|
3.6
|
20.7
|
1.0
|
|
CB
|
I:MET52
|
4.2
|
21.2
|
1.0
|
|
CB
|
J:MET52
|
4.2
|
20.8
|
1.0
|
|
C3B
|
J:HEM201
|
4.2
|
24.8
|
1.0
|
|
C3D
|
J:HEM201
|
4.3
|
27.2
|
1.0
|
|
C3C
|
J:HEM201
|
4.3
|
24.2
|
1.0
|
|
C2C
|
J:HEM201
|
4.3
|
23.0
|
1.0
|
|
C2D
|
J:HEM201
|
4.3
|
19.6
|
1.0
|
|
C2A
|
J:HEM201
|
4.3
|
23.7
|
1.0
|
|
C2B
|
J:HEM201
|
4.3
|
22.4
|
1.0
|
|
C3A
|
J:HEM201
|
4.4
|
26.3
|
1.0
|
|
Iron binding site 6 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 6 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Fe201
b:23.5
occ:1.00
|
FE
|
L:HEM201
|
0.0
|
23.5
|
1.0
|
|
NC
|
L:HEM201
|
2.0
|
26.1
|
1.0
|
|
NB
|
L:HEM201
|
2.1
|
25.2
|
1.0
|
|
NA
|
L:HEM201
|
2.1
|
24.8
|
1.0
|
|
ND
|
L:HEM201
|
2.1
|
24.4
|
1.0
|
|
SD
|
L:MET52
|
2.3
|
22.8
|
1.0
|
|
SD
|
K:MET52
|
2.3
|
21.1
|
1.0
|
|
C1C
|
L:HEM201
|
3.0
|
25.1
|
1.0
|
|
C4C
|
L:HEM201
|
3.0
|
27.1
|
1.0
|
|
C4B
|
L:HEM201
|
3.1
|
23.3
|
1.0
|
|
C4D
|
L:HEM201
|
3.1
|
26.3
|
1.0
|
|
C1A
|
L:HEM201
|
3.1
|
26.0
|
1.0
|
|
C1D
|
L:HEM201
|
3.1
|
27.5
|
1.0
|
|
C4A
|
L:HEM201
|
3.1
|
29.4
|
1.0
|
|
C1B
|
L:HEM201
|
3.1
|
30.5
|
1.0
|
|
CE
|
K:MET52
|
3.3
|
23.5
|
1.0
|
|
CE
|
L:MET52
|
3.4
|
23.4
|
1.0
|
|
CHC
|
L:HEM201
|
3.4
|
18.1
|
1.0
|
|
CHD
|
L:HEM201
|
3.4
|
25.8
|
1.0
|
|
CHA
|
L:HEM201
|
3.4
|
27.1
|
1.0
|
|
CHB
|
L:HEM201
|
3.5
|
24.1
|
1.0
|
|
CG
|
L:MET52
|
3.5
|
24.8
|
1.0
|
|
CG
|
K:MET52
|
3.5
|
25.9
|
1.0
|
|
CB
|
L:MET52
|
4.2
|
22.2
|
1.0
|
|
C2C
|
L:HEM201
|
4.2
|
28.0
|
1.0
|
|
C3C
|
L:HEM201
|
4.2
|
24.9
|
1.0
|
|
CB
|
K:MET52
|
4.2
|
24.9
|
1.0
|
|
C3B
|
L:HEM201
|
4.3
|
27.1
|
1.0
|
|
C3D
|
L:HEM201
|
4.3
|
29.1
|
1.0
|
|
C2A
|
L:HEM201
|
4.3
|
28.0
|
1.0
|
|
C2D
|
L:HEM201
|
4.3
|
25.4
|
1.0
|
|
C3A
|
L:HEM201
|
4.3
|
26.6
|
1.0
|
|
C2B
|
L:HEM201
|
4.3
|
24.8
|
1.0
|
|
Iron binding site 7 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 7 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Fe201
b:20.9
occ:1.00
|
FE
|
N:HEM201
|
0.0
|
20.9
|
1.0
|
|
ND
|
N:HEM201
|
2.0
|
20.5
|
1.0
|
|
NB
|
N:HEM201
|
2.0
|
19.7
|
1.0
|
|
NC
|
N:HEM201
|
2.0
|
21.7
|
1.0
|
|
NA
|
N:HEM201
|
2.0
|
18.9
|
1.0
|
|
SD
|
N:MET52
|
2.3
|
21.2
|
1.0
|
|
SD
|
M:MET52
|
2.4
|
21.4
|
1.0
|
|
C4B
|
N:HEM201
|
3.0
|
22.7
|
1.0
|
|
C4D
|
N:HEM201
|
3.0
|
25.5
|
1.0
|
|
C1A
|
N:HEM201
|
3.0
|
23.3
|
1.0
|
|
C4C
|
N:HEM201
|
3.0
|
19.1
|
1.0
|
|
C1C
|
N:HEM201
|
3.0
|
23.4
|
1.0
|
|
C1D
|
N:HEM201
|
3.0
|
22.6
|
1.0
|
|
C1B
|
N:HEM201
|
3.1
|
21.2
|
1.0
|
|
C4A
|
N:HEM201
|
3.1
|
20.8
|
1.0
|
|
CHA
|
N:HEM201
|
3.3
|
22.0
|
1.0
|
|
CHC
|
N:HEM201
|
3.3
|
20.5
|
1.0
|
|
CE
|
M:MET52
|
3.4
|
22.0
|
1.0
|
|
CHD
|
N:HEM201
|
3.4
|
22.6
|
1.0
|
|
CE
|
N:MET52
|
3.4
|
19.7
|
1.0
|
|
CG
|
M:MET52
|
3.5
|
22.4
|
1.0
|
|
CG
|
N:MET52
|
3.5
|
20.8
|
1.0
|
|
CHB
|
N:HEM201
|
3.5
|
20.2
|
1.0
|
|
C3B
|
N:HEM201
|
4.2
|
24.4
|
1.0
|
|
CB
|
N:MET52
|
4.2
|
16.1
|
1.0
|
|
CB
|
M:MET52
|
4.2
|
23.0
|
1.0
|
|
C3D
|
N:HEM201
|
4.3
|
21.1
|
1.0
|
|
C3C
|
N:HEM201
|
4.3
|
19.8
|
1.0
|
|
C2B
|
N:HEM201
|
4.3
|
21.2
|
1.0
|
|
C2A
|
N:HEM201
|
4.3
|
25.5
|
1.0
|
|
C2C
|
N:HEM201
|
4.3
|
26.8
|
1.0
|
|
C2D
|
N:HEM201
|
4.3
|
21.5
|
1.0
|
|
C3A
|
N:HEM201
|
4.3
|
23.6
|
1.0
|
|
Iron binding site 8 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 8 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
P:Fe201
b:21.0
occ:1.00
|
FE
|
P:HEM201
|
0.0
|
21.0
|
1.0
|
|
NA
|
P:HEM201
|
2.0
|
22.6
|
1.0
|
|
NC
|
P:HEM201
|
2.0
|
18.1
|
1.0
|
|
NB
|
P:HEM201
|
2.1
|
24.8
|
1.0
|
|
ND
|
P:HEM201
|
2.1
|
22.7
|
1.0
|
|
SD
|
P:MET52
|
2.3
|
21.8
|
1.0
|
|
SD
|
O:MET52
|
2.4
|
20.5
|
1.0
|
|
C1A
|
P:HEM201
|
3.0
|
23.7
|
1.0
|
|
C1C
|
P:HEM201
|
3.0
|
22.3
|
1.0
|
|
C4B
|
P:HEM201
|
3.0
|
26.8
|
1.0
|
|
C4C
|
P:HEM201
|
3.1
|
25.2
|
1.0
|
|
C4D
|
P:HEM201
|
3.1
|
23.4
|
1.0
|
|
C4A
|
P:HEM201
|
3.1
|
21.9
|
1.0
|
|
C1D
|
P:HEM201
|
3.1
|
25.1
|
1.0
|
|
C1B
|
P:HEM201
|
3.1
|
23.3
|
1.0
|
|
CE
|
P:MET52
|
3.3
|
18.9
|
1.0
|
|
CHC
|
P:HEM201
|
3.4
|
20.2
|
1.0
|
|
CE
|
O:MET52
|
3.4
|
22.2
|
1.0
|
|
CHA
|
P:HEM201
|
3.4
|
24.2
|
1.0
|
|
CG
|
O:MET52
|
3.4
|
21.9
|
1.0
|
|
CHD
|
P:HEM201
|
3.5
|
21.3
|
1.0
|
|
CHB
|
P:HEM201
|
3.5
|
21.8
|
1.0
|
|
CG
|
P:MET52
|
3.5
|
21.2
|
1.0
|
|
CB
|
O:MET52
|
4.2
|
20.4
|
1.0
|
|
CB
|
P:MET52
|
4.2
|
21.6
|
1.0
|
|
C2A
|
P:HEM201
|
4.2
|
23.4
|
1.0
|
|
C3A
|
P:HEM201
|
4.3
|
25.5
|
1.0
|
|
C3C
|
P:HEM201
|
4.3
|
21.2
|
1.0
|
|
C2C
|
P:HEM201
|
4.3
|
23.0
|
1.0
|
|
C3B
|
P:HEM201
|
4.3
|
22.8
|
1.0
|
|
C3D
|
P:HEM201
|
4.3
|
24.9
|
1.0
|
|
C2D
|
P:HEM201
|
4.3
|
22.0
|
1.0
|
|
C2B
|
P:HEM201
|
4.3
|
24.7
|
1.0
|
|
Iron binding site 9 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 9 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe201
b:23.3
occ:1.00
|
FE
|
Q:HEM201
|
0.0
|
23.3
|
1.0
|
|
NC
|
Q:HEM201
|
2.0
|
23.2
|
1.0
|
|
NA
|
Q:HEM201
|
2.0
|
26.5
|
1.0
|
|
NB
|
Q:HEM201
|
2.1
|
24.4
|
1.0
|
|
ND
|
Q:HEM201
|
2.1
|
21.9
|
1.0
|
|
SD
|
Q:MET52
|
2.3
|
21.1
|
1.0
|
|
SD
|
R:MET52
|
2.3
|
23.1
|
1.0
|
|
C1C
|
Q:HEM201
|
3.0
|
23.3
|
1.0
|
|
C4D
|
Q:HEM201
|
3.0
|
22.5
|
1.0
|
|
C1A
|
Q:HEM201
|
3.0
|
20.9
|
1.0
|
|
C4B
|
Q:HEM201
|
3.0
|
24.7
|
1.0
|
|
C4C
|
Q:HEM201
|
3.1
|
23.9
|
1.0
|
|
C1B
|
Q:HEM201
|
3.1
|
22.3
|
1.0
|
|
C4A
|
Q:HEM201
|
3.1
|
25.7
|
1.0
|
|
C1D
|
Q:HEM201
|
3.1
|
23.4
|
1.0
|
|
CHA
|
Q:HEM201
|
3.3
|
21.0
|
1.0
|
|
CHC
|
Q:HEM201
|
3.3
|
25.9
|
1.0
|
|
CE
|
Q:MET52
|
3.4
|
21.1
|
1.0
|
|
CE
|
R:MET52
|
3.4
|
24.8
|
1.0
|
|
CG
|
Q:MET52
|
3.5
|
21.9
|
1.0
|
|
CHD
|
Q:HEM201
|
3.5
|
21.3
|
1.0
|
|
CHB
|
Q:HEM201
|
3.5
|
23.2
|
1.0
|
|
CG
|
R:MET52
|
3.6
|
24.3
|
1.0
|
|
CB
|
Q:MET52
|
4.1
|
24.1
|
1.0
|
|
C2C
|
Q:HEM201
|
4.2
|
23.9
|
1.0
|
|
CB
|
R:MET52
|
4.2
|
22.6
|
1.0
|
|
C3C
|
Q:HEM201
|
4.2
|
24.1
|
1.0
|
|
C2A
|
Q:HEM201
|
4.2
|
28.6
|
1.0
|
|
C3D
|
Q:HEM201
|
4.2
|
26.4
|
1.0
|
|
C3B
|
Q:HEM201
|
4.3
|
24.2
|
1.0
|
|
C2B
|
Q:HEM201
|
4.3
|
25.6
|
1.0
|
|
C3A
|
Q:HEM201
|
4.3
|
22.9
|
1.0
|
|
C2D
|
Q:HEM201
|
4.3
|
26.2
|
1.0
|
|
Iron binding site 10 out
of 12 in 4tod
Go back to
Iron Binding Sites List in 4tod
Iron binding site 10 out
of 12 in the 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of 2.05A Resolution Structure of Bfrb (D34F) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Fe201
b:23.0
occ:1.00
|
FE
|
T:HEM201
|
0.0
|
23.0
|
1.0
|
|
NA
|
T:HEM201
|
2.0
|
24.1
|
1.0
|
|
NB
|
T:HEM201
|
2.0
|
25.4
|
1.0
|
|
NC
|
T:HEM201
|
2.0
|
26.3
|
1.0
|
|
ND
|
T:HEM201
|
2.1
|
26.2
|
1.0
|
|
SD
|
T:MET52
|
2.3
|
23.2
|
1.0
|
|
SD
|
S:MET52
|
2.4
|
24.5
|
1.0
|
|
C1A
|
T:HEM201
|
3.0
|
25.1
|
1.0
|
|
C4B
|
T:HEM201
|
3.0
|
27.7
|
1.0
|
|
C4D
|
T:HEM201
|
3.0
|
23.2
|
1.0
|
|
C1C
|
T:HEM201
|
3.1
|
20.6
|
1.0
|
|
C4C
|
T:HEM201
|
3.1
|
28.7
|
1.0
|
|
C4A
|
T:HEM201
|
3.1
|
24.7
|
1.0
|
|
C1D
|
T:HEM201
|
3.1
|
25.7
|
1.0
|
|
C1B
|
T:HEM201
|
3.1
|
25.9
|
1.0
|
|
CE
|
T:MET52
|
3.3
|
24.1
|
1.0
|
|
CHA
|
T:HEM201
|
3.3
|
22.8
|
1.0
|
|
CE
|
S:MET52
|
3.4
|
25.4
|
1.0
|
|
CHC
|
T:HEM201
|
3.4
|
21.9
|
1.0
|
|
CG
|
T:MET52
|
3.5
|
23.6
|
1.0
|
|
CHD
|
T:HEM201
|
3.5
|
24.9
|
1.0
|
|
CHB
|
T:HEM201
|
3.5
|
25.5
|
1.0
|
|
CG
|
S:MET52
|
3.6
|
24.9
|
1.0
|
|
CB
|
T:MET52
|
4.2
|
24.2
|
1.0
|
|
C2A
|
T:HEM201
|
4.2
|
24.1
|
1.0
|
|
CB
|
S:MET52
|
4.2
|
25.9
|
1.0
|
|
C3B
|
T:HEM201
|
4.3
|
25.6
|
1.0
|
|
C3D
|
T:HEM201
|
4.3
|
25.8
|
1.0
|
|
C3A
|
T:HEM201
|
4.3
|
22.3
|
1.0
|
|
C2C
|
T:HEM201
|
4.3
|
24.1
|
1.0
|
|
C3C
|
T:HEM201
|
4.3
|
27.5
|
1.0
|
|
C2D
|
T:HEM201
|
4.3
|
24.5
|
1.0
|
|
C2B
|
T:HEM201
|
4.3
|
24.2
|
1.0
|
|
Reference:
H.Yao,
H.Rui,
R.Kumar,
K.Eshelman,
S.Lovell,
K.P.Battaile,
W.Im,
M.Rivera.
Concerted Motions Networking Pores and Distant Ferroxidase Centers Enable Bacterioferritin Function and Iron Traffic. Biochemistry 2015.
ISSN: ISSN 0006-2960
PubMed: 25640193
DOI: 10.1021/BI501255R
Page generated: Mon Aug 5 10:28:19 2024
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